ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6059 good K KOG4168 Transcription Predicted RNA polymerase III subunit C17
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6059 2115220 2114756 -155
(155 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJL011c [K] KOG4168 Predicted RNA polymerase III subunit C17 151 3e-37
Hs7656977 [K] KOG4168 Predicted RNA polymerase III subunit C17 59 3e-09
SPAPB1E7.10 [K] KOG4168 Predicted RNA polymerase III subunit C17 47 8e-06
>YJL011c [K] KOG4168 Predicted RNA polymerase III subunit C17
Length = 161
Score = 151 bits (382), Expect = 3e-37
Identities = 76/158 (48%), Positives = 104/158 (65%), Gaps = 7/158 (4%)
Query: 1 MRVLEEKNAFMSDYETLQFLISLQNQHRWTSGS-------KSDRKHNKPYYHPELQTITR 53
M+VLEE+NAF+SDYE L+FL L+ +H W S +S K N+PY HPELQ ITR
Sbjct: 1 MKVLEERNAFLSDYEVLKFLTDLEKKHLWDQKSLAALKKSRSKGKQNRPYNHPELQGITR 60
Query: 54 DTVRYITQRSTTAEDPEEPETSDKTVPNNANKSTLLNLTTDQFSTLMQELNAFPLYKAEK 113
+ V Y++ +E E + + +A KS + ++ + F+ LM +LN+F L+KAEK
Sbjct: 61 NVVNYLSINKNFINQEDEGEERESSGAKDAEKSGISKMSDESFAELMTKLNSFKLFKAEK 120
Query: 114 LQIVNQLPTNLVHLYSIVEECESRLDEGQVTSLLECIS 151
LQIVNQLP N+VHLYSIVEEC++R DE + +LE IS
Sbjct: 121 LQIVNQLPANMVHLYSIVEECDARFDEKTIEEMLEIIS 158
>Hs7656977 [K] KOG4168 Predicted RNA polymerase III subunit C17
Length = 148
Score = 58.5 bits (140), Expect = 3e-09
Identities = 44/151 (29%), Positives = 68/151 (44%), Gaps = 30/151 (19%)
Query: 1 MRVLEEKNAFMSDYETLQFLISLQNQHRWTSGSKSDRKHNKPYYHPELQTITRDTVRYIT 60
M V + +A +S+YE Q L L+ Q + KH+ + L TIT +T++YI+
Sbjct: 1 MEVKDANSALLSNYEVFQLLTDLKEQRK----ESGKNKHSSGQQN--LNTITYETLKYIS 54
Query: 61 QRSTTAEDPEEPETSDKTVPNNANKSTLLNLTTDQFSTLMQELNAFPLYKAEKLQIVNQL 120
+ + PE +F T L + L KAEKLQ++N
Sbjct: 55 KTPCRHQSPE---------------------IVREFLTA---LKSHKLTKAEKLQLLNHR 90
Query: 121 PTNLVHLYSIVEECESRLDEGQVTSLLECIS 151
P V + +VEE E RL E Q+ +LL ++
Sbjct: 91 PVTAVEIQLMVEESEERLTEEQIEALLHTVT 121
>SPAPB1E7.10 [K] KOG4168 Predicted RNA polymerase III subunit C17
Length = 129
Score = 47.4 bits (111), Expect = 8e-06
Identities = 36/153 (23%), Positives = 68/153 (43%), Gaps = 26/153 (16%)
Query: 1 MRVLEEKNAFMSDYETLQFLISLQNQHRWTSGSKSDRKHNKPYYHPELQTITRDTVRYIT 60
M+VLE ++A++++ E L ++N+ + +R + L+TI + ++Y++
Sbjct: 1 MKVLEARDAYLTNAEVFFHLKEMENEQ---NARTQERGAAQALVCENLRTIQFEILKYLS 57
Query: 61 QRSTTAEDPEEPETSDKTVPNNANKSTLLNLTTDQFSTLMQELNAFPLYKAEKLQIVNQL 120
+ LT ++F + N F L KAE L I+N
Sbjct: 58 SQGNCE-----------------------GLTKERFLDCIAIFNEFELTKAEILVILNNK 94
Query: 121 PTNLVHLYSIVEECESRLDEGQVTSLLECISRT 153
P+++ LY+ +E E R E + L+E I+ T
Sbjct: 95 PSSVPELYACIEGIEERFKEEDIFKLVEKINTT 127
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.128 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,143,395
Number of Sequences: 60738
Number of extensions: 359194
Number of successful extensions: 1130
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1127
Number of HSP's gapped (non-prelim): 3
length of query: 155
length of database: 30,389,216
effective HSP length: 97
effective length of query: 58
effective length of database: 24,497,630
effective search space: 1420862540
effective search space used: 1420862540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)