ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI6103   suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI6103 2123577  2127068 1164 
         (1164 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR256w [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...    52   5e-06

>YLR256w [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 1502

 Score = 52.0 bits (123), Expect = 5e-06
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 20/187 (10%)

Query: 8   SCLVCRRRKVRCDRAKPVCLVCVKHGSNMECNY-------EVQKREVKFVSMKTPDVSNP 60
           SC +CR+RKV+CD+ +P C  C K G    C+Y       E +K  +K   +K       
Sbjct: 63  SCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVK 122

Query: 61  RMKKQKSFKYSIPFSGSTTVVKELDVLKQRIHSLE-SLLSKRNVSSTSDNMNYSPYVKIE 119
            ++K  S  +S P S S       +     + S E + L   N  S S   +     + +
Sbjct: 123 SLEKTLSKVHSSPSSNSLKSYNTPESSNLFMGSDEHTTLVNANTGSASSASHMHQQQQQQ 182

Query: 120 R------------NAHFGSNNVVPLDLSNYEDFNFYHNLETVDVKGGRLSFTGALNYISI 167
           +            NA+  S+++   +  + ++ +   + + + +K       GA +++SI
Sbjct: 183 QQQEQQQDFSRSANANANSSSLSISNKYDNDELDLTKDFDLLHIKSNGTIHLGATHWLSI 242

Query: 168 SKVDPYL 174
            K DPYL
Sbjct: 243 MKGDPYL 249


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,402,492
Number of Sequences: 60738
Number of extensions: 2876689
Number of successful extensions: 8520
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8517
Number of HSP's gapped (non-prelim): 3
length of query: 1164
length of database: 30,389,216
effective HSP length: 117
effective length of query: 1047
effective length of database: 23,282,870
effective search space: 24377164890
effective search space used: 24377164890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)