ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6133 suspect: LH R KOG0017 General function prediction only FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6133 2134385 2138143 1253
(1253 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR256w [R] KOG0017 FOG: Transposon-encoded proteins with TYA re... 994 0.0
>YLR256w [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
transcriptase integrase domains in various combinations
Length = 1502
Score = 994 bits (2570), Expect = 0.0
Identities = 610/1455 (41%), Positives = 793/1455 (53%), Gaps = 235/1455 (16%)
Query: 1 MSSITSPGTGTPQQ-------------KRKRNRVPLSCTICRKRKVKCDKGRPQCQQCVK 47
M + T+PG T KRKRNR+PLSCTICRKRKVKCDK RP CQQC K
Sbjct: 27 MHTATTPGANTSSNSPPLHMSSDSSKIKRKRNRIPLSCTICRKRKVKCDKLRPHCQQCTK 86
Query: 48 TGVGHLCHYMEQTWAEEAEKELSKDSELKQLRERVKSLEETLSKVHATTTNPMTSANQSP 107
TGV HLCHYMEQTWAEEAEKEL KD+ELK+LRERVKSLE+TLSKVH++ ++ + +P
Sbjct: 87 TGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLSKVHSSPSSNSLKSYNTP 146
Query: 108 ASDGLNVGCPH----AGGSTQRLLSGSNGNSPILSTEQTPSNE----------------- 146
S L +G +T S S+ + +Q +
Sbjct: 147 ESSNLFMGSDEHTTLVNANTGSASSASHMHQQQQQQQQQEQQQDFSRSANANANSSSLSI 206
Query: 147 -NKYDNDELDLTRQFDMLHLKNNGTVHLGATHWLAIMKGDPYLKLLWGHIFTLREKLTEW 205
NKYDNDELDLT+ FD+LH+K+NGT+HLGATHWL+IMKGDPYLKLLWGHIF +REKL EW
Sbjct: 207 SNKYDNDELDLTKDFDLLHIKSNGTIHLGATHWLSIMKGDPYLKLLWGHIFAMREKLNEW 266
Query: 206 YSQKRKSSTVSAGAGTCPVIHGSIQQS-------KCPVAHATRNVAERPKSSES----RC 254
Y QK S + + CP+ H S KCPV H+ + E+ +C
Sbjct: 267 YYQKNSYSKLK--SSKCPINHAQAPPSAAAAATRKCPVDHSAFSSGMVAPKEETPLPRKC 324
Query: 255 PVAHA--------PRPEKNSTQKCPVDHSAFIG----------SASSGQCPVAHTVVKEE 296
PV H PR + +S ++CPVDH+ + S S + + H K
Sbjct: 325 PVDHTMFSSGMIPPREDTSSQKRCPVDHTMYSAGMMPPKDETPSPFSTKAMIDHN--KHT 382
Query: 297 VDATTSGCPIDHTKF-----SSMEGSPDPAAKGKLPALPSFQNLTAKCPMLREGT---PT 348
++ S CP+DH + S M S A + P S TA P T
Sbjct: 383 MNPPQSKCPVDHRNYMKDYPSDMANSSSNPA-SRCPIDHSSMKNTAALPASTHNTIPHHQ 441
Query: 349 PTLNSQESGHNSKRTSVVPEMSSEQATDAISKALPPKKIVFLFMDKFFNHIYPIVPILDE 408
P S H ++ M+ + + + LPPK+++ LF++KFF H+YP +PILDE
Sbjct: 442 PQSGSHARSHPAQSRKHDSYMTESEVLATLCEMLPPKRVIALFIEKFFKHLYPAIPILDE 501
Query: 409 QTFK---------------------XXXXXXXXXXXXXXXXKLTKPLDACVLGILLIILR 447
Q FK L K D+C LGIL+IILR
Sbjct: 502 QNFKNHVNQMLSLSSMNPTVNNFGMSMPSSSTLENQPITQINLPKLSDSCNLGILIIILR 561
Query: 448 ITWLSLTPNACNIKLGPECESLKL-----EPTYSATITQAKEEAMLLKYETPIETVEIVR 502
+TWLS+ N+C + LG E S + + SA + AKEE++LLK+ETP+E +E+ +
Sbjct: 562 LTWLSIPSNSCEVDLGEESGSFLVPNESSNMSASALTSMAKEESLLLKHETPVEALELCQ 621
Query: 503 KFLIKFDEISSFANSNVNITTVQFAIFYKLYLMS-SPDKTDYTQPNT--FTSTGQDNETH 559
K+LIKFDE+SS +N+NVN+TTVQFAIFY Y+ S S D T T N + G D+E+H
Sbjct: 622 KYLIKFDELSSISNNNVNLTTVQFAIFYNFYMKSASNDLTTLTNTNNTGMANPGHDSESH 681
Query: 560 QVLMSSIVQMAFSCGLHRDPDNFPQLNTAV---------NGSKLT--------------- 595
Q+L+S+I QMAFSCGLHRDPDNFPQLN + NGSK
Sbjct: 682 QILLSNITQMAFSCGLHRDPDNFPQLNATIPATSQDVSNNGSKKANPSTNPTLNNNMSAA 741
Query: 596 ----------------------KEALSNTERLKHTWRKTWFFIVSLDVQQSLSLGTPRLL 633
KE + ER KHTWRK W++IVS+DV QSLSLG+PRLL
Sbjct: 742 TTNSSSRSGSADSRSGSNPVNKKENQVSIERFKHTWRKIWYYIVSMDVNQSLSLGSPRLL 801
Query: 634 RNLNDFSDTKLPCASKIDYVNNIKELILVKNFKLFFQIDLCIISVLNHILNVSLARTVRK 693
RNL DFSDTKLP AS+IDYV +IKELI+VKNF LFFQIDLCII+VLNHILNVSLAR+VRK
Sbjct: 802 RNLRDFSDTKLPSASRIDYVRDIKELIIVKNFTLFFQIDLCIIAVLNHILNVSLARSVRK 861
Query: 694 FELDQLIQSLGKLRDGVTPTNDVVNDLVNKGLLFTTEGTVLLDQN---------PEHXXX 744
FELD LI L L G NDVV+ L+NKGLL T+EG + N P+
Sbjct: 862 FELDSLINLLKNLTYGTENVNDVVSSLINKGLLPTSEGGSVDSNNDEIYGLPKLPDILNH 921
Query: 745 XXXXXXXXXXXDXXXXXXXXXXXXXAHESTTRALFFSKHVTISMLQYLLNYILFTHYEPL 804
HESTTRALFFSKH+TI ML YLLNYILFTHYEP+
Sbjct: 922 GQHNQNLYADGRNTSSSDIDKKLDLPHESTTRALFFSKHMTIRMLLYLLNYILFTHYEPM 981
Query: 805 GNEDPGTRILAKDYAQEALNYAVEGFKNCILFYNS-TGMNNMFSYMDVLLSPTCLDVGHR 863
G+EDPGT ILAK+YAQEALN+A++G++NC++F+N+ N++F YM+V+LS CLD+GHR
Sbjct: 982 GSEDPGTNILAKEYAQEALNFAMDGYRNCMIFFNNIRNTNSLFDYMNVILSYPCLDIGHR 1041
Query: 864 ALQFIVCLILRAKCGPLTGMGESPAIGNQNNT-VTSSSEDETDQMKRDSSP--SPGNVLT 920
+LQFIVCLILRAKCGPLTGM ES I N ++ SS EDE ++K++SS + +
Sbjct: 1042 SLQFIVCLILRAKCGPLTGMRESSIITNGTSSGFNSSVEDEDVKVKQESSDELKKDDFMK 1101
Query: 921 DVSLDAGENLAEVLLARMILFHKLTKQISAKYNYAVRMTKSTGFFIXXXXXXXXXXXXXX 980
DV+LD+G++LAE+L++RM+LF KLTKQ+S KYNYA+RM KSTGFF+
Sbjct: 1102 DVNLDSGDSLAEILMSRMLLFQKLTKQLSKKYNYAIRMNKSTGFFVSLLDTPSKKSDSKS 1161
Query: 981 XXXXXXRLH-QHPNIANMTSFFKNVPSLVLSAGGDQIRRCPVYQDAVGFL-PSKVTSGTF 1038
+ +HP ++NM+ F L+ DQ+++CPVYQDA+GF+ P+ G+
Sbjct: 1162 GGSSFMLGNWKHPKVSNMSGF--------LAGDKDQLQKCPVYQDALGFVSPTGANEGSA 1213
Query: 1039 NSIFHSTAPPSFNSAVTQQLPPLNIQYQPITFRDTLRRTSDVRGTPETAKRR----KVDT 1094
S + T QLPP+ Y+PIT+ + R + G E +RR +D
Sbjct: 1214 PMQGMSLQGSTARMGGT-QLPPIR-SYKPITYTSSNLRRMNETGEAEAKRRRFNDGYIDN 1271
Query: 1095 TSKNFSEQKVEVKVENPQISLP----------------PSPAQISAVTPFEPLLPTLDKV 1138
S N + + K N S+ P+ ++ +T LP+LD++
Sbjct: 1272 NSNNDIPRGISPKPSNGLSSVQPLLSSFSMNQLNGGTIPTVPSLTNITSQMGALPSLDRI 1331
Query: 1139 PAVPQGKVPYSPTPSLSGTQPPIVAPSNLQQLNFNSPVPPSD------------------ 1180
Q +P + P +N N+ +P S
Sbjct: 1332 -TTNQINLPDPSRDEAFDNSIKQMTPMTSAFMNANTTIPSSTLNGNMNMNGAGTANTDTS 1390
Query: 1181 -----LSNITD--------------SPDFEDFLSEHTSLNGLMINPSSIVEAVGFDGYSG 1221
LS +T PD EDFL ++++ NGLMINPSS+VE VG
Sbjct: 1391 ANGSALSTLTSPQGSDLASNSATQYKPDLEDFLMQNSNFNGLMINPSSLVEVVGGYNDPN 1450
Query: 1222 NGGLRLQADFLPIDN 1236
N G DFLP+DN
Sbjct: 1451 NLGRNDAVDFLPVDN 1465
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,745,761
Number of Sequences: 60738
Number of extensions: 3335735
Number of successful extensions: 12136
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12109
Number of HSP's gapped (non-prelim): 6
length of query: 1253
length of database: 30,389,216
effective HSP length: 118
effective length of query: 1135
effective length of database: 23,222,132
effective search space: 26357119820
effective search space used: 26357119820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)