ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6225 good K KOG0262 Transcription RNA polymerase I, large subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6225 2165407 2170365 1653
(1653 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR341w [K] KOG0262 RNA polymerase I large subunit 2590 0.0
SPBC4C3.05c [K] KOG0262 RNA polymerase I large subunit 1582 0.0
At3g57660 [K] KOG0262 RNA polymerase I large subunit 931 0.0
CE22157 [K] KOG0262 RNA polymerase I large subunit 834 0.0
Hs7661686 [K] KOG0262 RNA polymerase I large subunit 759 0.0
ECU04g1400 [K] KOG0262 RNA polymerase I large subunit 758 0.0
7303170 [K] KOG0262 RNA polymerase I large subunit 602 e-171
Hs5902062 [K] KOG0261 RNA polymerase III large subunit 414 e-115
YOR116c [K] KOG0261 RNA polymerase III large subunit 399 e-110
SPBC651.08c [K] KOG0261 RNA polymerase III large subunit 391 e-108
CE04196 [K] KOG0261 RNA polymerase III large subunit 390 e-107
7292659 [K] KOG0260 RNA polymerase II large subunit 364 e-100
SPBC28F2.12 [K] KOG0260 RNA polymerase II large subunit 360 1e-98
ECU07g0090 [K] KOG0261 RNA polymerase III large subunit 360 1e-98
At5g60040 [K] KOG0261 RNA polymerase III large subunit 358 3e-98
At4g35800 [K] KOG0260 RNA polymerase II large subunit 348 4e-95
YDL140c [K] KOG0260 RNA polymerase II large subunit 347 1e-94
Hs4505939 [K] KOG0260 RNA polymerase II large subunit 346 2e-94
ECU03g0290 [K] KOG0260 RNA polymerase II large subunit 339 2e-92
CE28300 [K] KOG0260 RNA polymerase II large subunit 332 3e-90
7293125 [K] KOG0261 RNA polymerase III large subunit 212 4e-54
At1g63020_1 [K] KOG0260 RNA polymerase II large subunit 105 8e-22
>YOR341w [K] KOG0262 RNA polymerase I large subunit
Length = 1664
Score = 2590 bits (6713), Expect = 0.0
Identities = 1288/1666 (77%), Positives = 1436/1666 (85%), Gaps = 19/1666 (1%)
Query: 1 MDISKPVGAEITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAFLKN 60
MDISKPVG+EITS+DF +LT+ EIR LSAKQ+TNPTVLDNLGHP+ GGLYDLALGAFL+N
Sbjct: 1 MDISKPVGSEITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRN 60
Query: 61 LCATCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVHLYAC 120
LC+TCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLR+SCLFCHHFRLKS EVH YAC
Sbjct: 61 LCSTCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYAC 120
Query: 121 KLRLLQYALIDERYQIDNIRI---NQMVXXXXXXXXXXXXXINGKTTNSSG--TQHALRE 175
KLRLLQY LIDE Y++D I + N + ++G+ + S + L E
Sbjct: 121 KLRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNE 180
Query: 176 LRRKRNEFVDMAIAKALSEGRTTEHGTFTATVNDERKALIHDFHKRLLSRPKCDNCGMFS 235
L+ KR+E+VDMAIAKALS+GRTTE G+FTATVNDERK L+H+FHK+LLSR KCDNCGMFS
Sbjct: 181 LKSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFS 240
Query: 236 PKFRKDGFTKIFETALTDKQITNNRVKGLIRQDMIKKKNQMKKLQVNDTSSESASRDEDG 295
PKFRKDGFTKIFETAL +KQITNNRVKG IRQDMIKK+ Q KKL D S+E+++ DE+
Sbjct: 241 PKFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQKQAKKL---DGSNEASANDEES 297
Query: 296 EFGTARSPVNLKPKTGSTYILSTEVRNILRAVFRSEQEVLQYVFFSRPNHNKKIVTADMF 355
F R+P +PKTGSTYILSTEV+NIL VFR EQ VLQYVF SRPN ++K+V AD F
Sbjct: 298 -FDVGRNPTT-RPKTGSTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKLVKADSF 355
Query: 356 FMEVLIVPPTRFRLPSKLGDEVHENTQNQXXXXXXXXXXXXRDLNDEMSRLQKDKVSADD 415
FM+VL+VPPTRFRLPSKLG+EVHEN+QNQ RDLND++S+LQKDKVS +D
Sbjct: 356 FMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQKDKVSLED 415
Query: 416 RKVIFNRLMNAFVTIQNDVNAFIDSTKAQSSSGNKVPIPGLKQALEKKEGLFRKHMMGKR 475
R+VIF+RLMNAFVTIQNDVNAFIDSTKAQ + KVPIPG+KQALEKKEGLFRKHMMGKR
Sbjct: 416 RRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKR 475
Query: 476 VNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQ 535
VNYAARSVISPDPNIETNEIGVPPVFA KLTYPEPVTAYN+AELRQAVINGPDKWPGATQ
Sbjct: 476 VNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQ 535
Query: 536 IQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKNRDVVIMNRQPTL 595
IQNEDGS VSL+GM++EQRKALANQLLTPS++ H++NKKVYRHIKNRDVV+MNRQPTL
Sbjct: 536 IQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTL 595
Query: 596 HKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXXXXXXXTDS 655
HKASMMGHKVRVLP EKTLRLHYANTGAYNADFDGDEMNMHFPQ TDS
Sbjct: 596 HKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDS 655
Query: 656 QYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHATRNKLVTI 715
QYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGH TR+K+VT+
Sbjct: 656 QYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHTTRSKIVTL 715
Query: 716 PPAVMKPEPLWTGKQIITTVLLNTCPANMPGINLNSKNKIKNEYWGKSSEENNVVFKDGQ 775
PP + KP PLWTGKQIITTVLLN P +MPGINL SKNKIKNEYWGK S EN V+FKDG
Sbjct: 716 PPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKIKNEYWGKGSLENEVLFKDGA 775
Query: 776 LLCGILDKSQYGASKFGIVHSLHEVYGPDVAAKVLSVLGRLFTNYITATAFTCGMDDLRL 835
LLCGILDKSQYGASK+GIVHSLHEVYGP+VAAKVLSVLGRLFTNYITATAFTCGMDDLRL
Sbjct: 776 LLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRL 835
Query: 836 TAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGELLKRLEEILRDDNKLGILDAI 895
TAEGNKWR DIL+TSVD GR AAAEVTNLDKD +DD ELLKRL+EILRD+NK GILDA+
Sbjct: 836 TAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNKSGILDAV 895
Query: 896 TSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGR 955
TSSKVN+ITSQVVSKCVPDGTMKKFP NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGR
Sbjct: 896 TSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGR 955
Query: 956 RVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGLIDTAVKTSR 1015
RVPVMVSGKTLPSFKP+ETDA AGGY+KGRFYSGI+PQEYYFHCMAGREGLIDTAVKTSR
Sbjct: 956 RVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSR 1015
Query: 1016 SGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAVDITKESHMTEFKFCVDNYDA 1075
SGYLQRCLTKQLEGVH+SYDNS+RD DGTL+QF+YGGDA+DITKESHMT+F+FC+DNY A
Sbjct: 1016 SGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITKESHMTQFEFCLDNYYA 1075
Query: 1076 LLKKYNPSALVDHLDVESAXXXXXXXXXXXXXXXXXPHYAQTSKYDPVLSKFNPSKYLGA 1135
LLKKYNPSAL++HLDVESA PHY Q+ KYDPVL+K+NP+KYLG+
Sbjct: 1076 LLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGS 1135
Query: 1136 VSENFQDKLEKFISTNDDFFKKDENVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE 1195
VSENFQDKLE F+ N FK + VNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE
Sbjct: 1136 VSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE 1195
Query: 1196 PSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQLTMPIRDDVSDELADTFC 1255
PSTQMTLNTFHFAGHGAANVTLGIPR+REI+MTASAAIKTPQ+T+PI +DVSDE ADTFC
Sbjct: 1196 PSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQADTFC 1255
Query: 1256 KNITKVMLSEVIDKVQVTETIGAQDSS--TSSRSYIINVRFFDSEEYLEEYDVTKEELES 1313
K+I+KV+LSEVIDKV VTET G +++ ++RSY+I++RFFD+ EY EEYDV+KEEL++
Sbjct: 1256 KSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEELQN 1315
Query: 1314 VIAGKFIKTLEAAIVKEIKKQKKTSLPDVGIALPKSQT-AMGADERITNVEEDNDEEQMR 1372
VI+ +FI LEAAIVKEIKKQK+T+ PD+G+A+P+ QT + +EEDNDEEQ
Sbjct: 1316 VISNQFIHLLEAAIVKEIKKQKRTTGPDIGVAVPRLQTDVANSSSNSKRLEEDNDEEQSH 1375
Query: 1373 KKSKESVSYDDPDEDEVETMRQAEQTXXXXXXXXXXXXXXXXXXXXXXXXXR------EN 1426
KK+K++VSYD+PDEDE+ETMR+AE++ + E
Sbjct: 1376 KKTKQAVSYDEPDEDEIETMREAEKSSDEEGIDSDKESDSDSEDEDVDMNEQINKSIVEA 1435
Query: 1427 GKHMTKEQRDRQSALISSTRFVTKYNFDDDEGKWCEFKLELAGDTEKLLMVNIVEDICRK 1486
+M K QRDRQSA+IS RF+TKYNFDD+ GKWCEFKLELA DTEKLLMVNIVE+ICRK
Sbjct: 1436 NNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCEFKLELAADTEKLLMVNIVEEICRK 1495
Query: 1487 SIIRQVPHIDRCVHPEPENGKRVLVTEGVNFQAMWDQDDFIDINGIRSNDVAAVLKTYGV 1546
SIIRQ+PHIDRCVHPEPENGKRVLVTEGVNFQAMWDQ+ FID++GI SNDVAAVLKTYGV
Sbjct: 1496 SIIRQIPHIDRCVHPEPENGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGV 1555
Query: 1547 EAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGMESSTSSLMKMSY 1606
EAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQG YLAFNRQGME+STSS MKMSY
Sbjct: 1556 EAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGMETSTSSFMKMSY 1615
Query: 1607 ETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLLSKAP 1652
ETTCQFLTKAVLDNE E+L SPSA+IV+GKLN VGTGSFD+L+K P
Sbjct: 1616 ETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVLAKVP 1661
>SPBC4C3.05c [K] KOG0262 RNA polymerase I large subunit
Length = 1689
Score = 1582 bits (4097), Expect = 0.0
Identities = 827/1707 (48%), Positives = 1120/1707 (65%), Gaps = 84/1707 (4%)
Query: 1 MDISKPVGAEITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAFLKN 60
M+I++PV +EI S+ F + D++ K+S KQ+ NP +LDNL HP GGLYDLALG +LKN
Sbjct: 1 MNIAQPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKN 60
Query: 61 -LCATCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVHLYA 119
+CATC LDE++CPGH GHI LP+P Y+PLFF+Q+Y LRS+CL+CHHF+L +VHL+
Sbjct: 61 SVCATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFF 120
Query: 120 CKLRLLQYALIDERYQIDNIRINQMVXXXXXXXXXXXXXINGKTTNSSGTQHA-----LR 174
C+L+LL Y L++E ++N+ + + + +G + SG H
Sbjct: 121 CRLKLLDYGLLNESEMVENVSLTEAIIKNSNGTPLE----DGSDSEDSGLGHDDIAKDAA 176
Query: 175 ELRRKRNEFVDMAIAKALSEGRTTEH--GTFTATVNDERKALIHDFHKRLLSRPKCDNCG 232
L R R+EFV AK++++ R H T + ERK ++ F+ + SR +CDNC
Sbjct: 177 TLMRIRDEFV----AKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQ 232
Query: 233 MFSPKFRKDGFTKIFETALTDKQITNNRVKGLIRQDMIK---KKNQMKKLQVNDTSSESA 289
FSP FRK+GF KIFE L+ K + G IR D+++ KK+ + D+ S +
Sbjct: 233 SFSPNFRKEGFAKIFEIPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNE 292
Query: 290 SRDEDGE-FGTARSPVNLKPKT----GSTYILSTEVRNILRAVFRSEQEVLQYVFFSRPN 344
S E + F +P+ K K+ G+ Y+ STEVRN LR +F E VL ++ +
Sbjct: 293 SEVEGIDLFEEDPNPLKNKSKSPIAHGAKYMTSTEVRNHLRRLFVKENVVLSRLYAHKRG 352
Query: 345 HNKKIVTADMFFMEVLIVPPTRFRLPSKLGDEVHENTQNQXXXXXXXXXXXXRDLN-DEM 403
K +ADMFF++ + VPPTRFR SK+GDEVHEN QN+ L+ D
Sbjct: 353 ---KPASADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIASLSKDST 409
Query: 404 SRLQKD-KVSADDRKVIFNRLMNAFVTIQNDVNAFIDSTKAQSSSGNKVPIP-GLKQALE 461
+ D K + R F L+NAFV +Q+DVN+ IDS + SS G +P G+KQ LE
Sbjct: 410 VEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPGIKQILE 469
Query: 462 KKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQ 521
KKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVT YN E+R
Sbjct: 470 KKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRN 529
Query: 522 AVINGPDKWPGATQIQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAH--------SI 573
AVINGP KWPGA+ IQNEDG+ +SL+ +T+EQR ALANQLLTP ++ ++ +
Sbjct: 530 AVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINT 589
Query: 574 NKKVYRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEM 633
NKKVYRH++N D++I+NRQPTLHK SMM HK R+LPGEKT+R+HYAN +YNADFDGDEM
Sbjct: 590 NKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEM 649
Query: 634 NMHFPQXXXXXXXXXXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQ 693
NMHFPQ TDSQYL PTSG P+RGLIQDH+ GVWLT KD+F+TR++YQ
Sbjct: 650 NMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQ 709
Query: 694 QYIYGCIRPEDGHATRNKLVTIPPAVMKPEPLWTGKQIITTVLLNTCPANMPGINLNSKN 753
Q ++ ++P++ ++ T+PPA+ +P WTGKQII++VLLN P++ PG+NL SK
Sbjct: 710 QLLFQALKPDET-GMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKA 768
Query: 754 KIKNEYWGKSSEENNVVFKDGQLLCGILDKSQYGASKFGIVHSLHEVYGPDVAAKVLSVL 813
K+ +YW SEE +V+F DG+LLCGILDKS +GAS FG+VHS+HE+YGPD+A ++LSVL
Sbjct: 769 KVPGKYWSPDSEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVL 828
Query: 814 GRLFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDG 873
RLFT Y FTC MDDLRL +G+ WR +L+ G AA+E L D S
Sbjct: 829 SRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTD--SPIA 886
Query: 874 ELLKRLEEILRDDNKLGILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGA 933
L LEE+ RDD KL LDA K+N +TS +++KC+PDG + KFPYN MQ M +SGA
Sbjct: 887 LLNANLEEVYRDDEKLQGLDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGA 946
Query: 934 KGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQ 993
KGSNVNVSQI CLLGQQ LEGRRVP+MVSGK+LPSF P+ET A++GG+I RF +GI PQ
Sbjct: 947 KGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQ 1006
Query: 994 EYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGD 1053
EYYFHCMAGREGLIDTAVKTSRSGYLQRCL K LEG+ + YD++VRD DG+++QF YG D
Sbjct: 1007 EYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGED 1066
Query: 1054 AVDITKESHMTEFKFCVDNYDALLKKYNPSALVDHLDVESAXXXXXXXXXXXXXXXXXPH 1113
++D+TK+ H+T+F+F NY +L++KY +++ +D E+A
Sbjct: 1067 SLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKA------------ 1114
Query: 1114 YAQTSKYDPVLSKFNPSKYLGAVSENFQDKLEKFISTNDDFF---KK-----DENVNEKK 1165
+ KYDPVL K+ PS+YLG+VSE FQ ++++ N D KK D +NE K
Sbjct: 1115 LKKPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNESK 1174
Query: 1166 FRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREI 1225
F+ALMQL+Y +SL++PGE+VG++ASQS+GEPSTQMTLNTFHFAG GA NVTLGIPR+REI
Sbjct: 1175 FKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREI 1234
Query: 1226 IMTASAAIKTPQLTMPIRDDVSDELADTFCKNITKVMLSEVIDKVQVTETIGAQDSSTSS 1285
IMTASA I+TP +T+ + D VSD+ A FCK + K++LSEV+ +V+VTE I Q S S
Sbjct: 1235 IMTASANIQTPTMTLRLNDGVSDKRASAFCKEVNKLVLSEVVRQVRVTEKISGQGSDEQS 1294
Query: 1286 RSYIINVRFFDSEEYLEEYDVTKEELESVIAGKFIKTLEAAIVKEIKKQKK-------TS 1338
++Y I + + +EY +EY V +EE+ES + +F+K L I + K K+ +
Sbjct: 1295 KTYAIRLDLYSRDEYQDEYGVLQEEIESTFSNRFLKILNRIIKSYLAKSKQRKSGGKDDT 1354
Query: 1339 LPDVGIAL------PKSQTAMGADERITNVEEDNDEEQMRKKSKESVSYDDPDEDEVETM 1392
+P+VG AL ++ A E + + + D E+M +SK+ SY+ PDE + +
Sbjct: 1355 VPEVGQALKPLEDIDEAPIEGRAQEALEDEDNDATNEKMVSRSKQHASYEGPDEADKVAL 1414
Query: 1393 RQAEQTXXXXXXXXXXXXXXXXXXXXXXXXXREN---GKHMTKEQRDRQSALISSTRFVT 1449
RQ + + +E K T +R+ + + + +
Sbjct: 1415 RQLKGSNKVEDVNMDEEEDEGFKSDESVSDFKERKLLEKQNTVSISERRELQLKTAKEIL 1474
Query: 1450 K----YNFDDDEGKWCEFKLELAGDTEKLLMVNIVEDICRKSIIRQVPHIDRCVHPEPEN 1505
+FD G+W +L +TEKLLMV++VE C +++I ++P I RC P++
Sbjct: 1475 SNCKHLDFDYVNGEWATVELVFPINTEKLLMVSLVEKACSETVIHEIPGITRCFSKPPDS 1534
Query: 1506 GKRV---LVTEGVNFQAMWDQDDFIDINGIRSNDVAAVLKTYGVEAARNTIVNEINNVFS 1562
++TEGVN +A+W+ + I +N I +ND+AA+L+ YGVEAARN IV+E+++VF
Sbjct: 1535 ALDTVPKVITEGVNLKAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFG 1594
Query: 1563 RYAISVSFRHLDLIADMMTRQGNYLAFNRQGMESSTSSLMKMSYETTCQFLTKAVLDNEH 1622
Y I+V RHL LIAD MT +G Y AFNR G+E +TS KMS+ETTC FLT+A L +
Sbjct: 1595 VYGIAVDPRHLSLIADYMTFEGGYKAFNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDV 1654
Query: 1623 EELKSPSAKIVMGKLNGVGTGSFDLLS 1649
++L +PS+++V+G++ GTGSFD+ +
Sbjct: 1655 DDLSNPSSRLVVGRVGNFGTGSFDIFT 1681
>At3g57660 [K] KOG0262 RNA polymerase I large subunit
Length = 1670
Score = 931 bits (2407), Expect = 0.0
Identities = 603/1754 (34%), Positives = 901/1754 (50%), Gaps = 209/1754 (11%)
Query: 6 PVGAE--ITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAFL-KNLC 62
P+GA + S+ FS +T ++RK S +VT+P + DN+G+P GGLYDL LG K C
Sbjct: 20 PMGASQVVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQAC 79
Query: 63 ATCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVHLYACKL 122
+CG + CPGH GHIEL P Y+PL FN L+ +L+ +C FCHHF K +V +L
Sbjct: 80 NSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQL 139
Query: 123 RLLQYALIDERYQIDNIRINQMVXXXXXXXXXXXXXINGKTTNSSGTQHALRELRRKRNE 182
+L+ I Q+++ N T + S + E
Sbjct: 140 KLIIKGDIVSAKQLES---------------------NTPTKSKSSDESC---------E 169
Query: 183 FVDMAIAKALSEGRTTEHGTFTATVNDERKALIHDFHKRLLSRPKCDNCGMFSPKFRKDG 242
V + E E +T+ E A++ +F + LS C C +PK K
Sbjct: 170 SVVTTDSSEECEDSDVEDQRWTSLQFAEVTAVLKNFMR--LSSKSCSRCKGINPKLEKPM 227
Query: 243 FTKIFETALTDKQITNNRVKGLIRQDMIKKKNQMKKLQ----VNDTSSESASRDEDGEFG 298
F + A+ D + N ++GL K K ++ +D+ ++ S EDG+
Sbjct: 228 FGWVRMRAMKDSDVGANVIRGL------KLKKSTSSVENPDGFDDSGIDALSEVEDGDKE 281
Query: 299 TARSPVNLKPK----TGSTYILSTEVRNILRAVFRSEQEVLQYVFFSRPNHNKKIVTADM 354
T + + +L +EVRNIL+ ++++E E ++ + ++KI M
Sbjct: 282 TREKSTEVAAEFEEHNSKRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKI-DYSM 340
Query: 355 FFMEVLIVPPTRFRLPSKLGDEVHENTQNQXXXXXXXXXXXXRDLNDEMSRLQKDKVSAD 414
FF+E ++VPPT+FR P+ GD V E+ Q + N+ + +K+ D
Sbjct: 341 FFLESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVI-------ESNNILGNACTNKL--D 391
Query: 415 DRKVIFNRLMNAFVTIQNDVNAFIDSTKAQSSSGNKVPIPGLKQALEKKEGLFRKHMMGK 474
KVIF + +Q VN DS A S G+ Q LEKKEGLFR+ MMGK
Sbjct: 392 QSKVIFR-----WRNLQESVNVLFDSKTATVQSQRDSS--GICQLLEKKEGLFRQKMMGK 444
Query: 475 RVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGAT 534
RVN+A RSVISPDP I N+IG+PP FA KLTYPE VT +NV +LR+A+INGPD PGAT
Sbjct: 445 RVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGAT 504
Query: 535 QIQNEDGSFVSLVGMTLEQRKALANQLLTP--STHDVAHSIN-----KKVYRHIKNRDVV 587
D S + T + R+A+A +LL+ +T ++ + + K V+RH+++ D+V
Sbjct: 505 HYS--DKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIV 562
Query: 588 IMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXX 647
++NRQPTLHK S+M HKVRVL GEKTLRLHYAN YNADFDGDEMN+HFPQ
Sbjct: 563 LVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEA 622
Query: 648 XXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGC------IR 701
++QY P++G P+R LIQDHI + V LT +D+F ++ + Q ++ +
Sbjct: 623 YNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLS 682
Query: 702 PEDGHATRN--------KLVTIPPAVMKPEPLWTGKQIITTVLLNTCPANMP-------- 745
G + + +L+T+ PA++KP PLWTGKQ+IT VL + P
Sbjct: 683 TFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATK 742
Query: 746 -----------GINLNS----KNKIKNEYWGKSSEENNVVFKDGQLLCGILDKSQYGASK 790
+ NS K K +E W ++ E+ + + + +CG++DK+Q+ +
Sbjct: 743 LPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQF--AD 800
Query: 791 FGIVHSLHEVYGPDVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTS 850
+G+VH++HE+YG + A +LSV RLFT ++ FTCG+DDL + + ++ R LQ
Sbjct: 801 YGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQEC 860
Query: 851 VDIGRVAAAEVTNLDKDVKSDDGELLKRLEEILRDDNK--LGILDAITSSKVNSITSQ-V 907
++G + +D DV+ D ++ R+E IL +D + L LD + +N +S+ V
Sbjct: 861 ENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDRSIVNYLNQCSSKGV 920
Query: 908 VSKCVPDGTMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLP 967
++ + DG +K N + M +SGAKGS VN QI LGQQ LEG+RVP MVSGKTLP
Sbjct: 921 MNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLP 980
Query: 968 SFKPFETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQL 1027
F P++ RAGG+I RF SG+RPQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K L
Sbjct: 981 CFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNL 1040
Query: 1028 EGVHISYDNSVRDGDGTLIQFLYGGDAVDITKESHMTEFKFCVDNYDALLKKYNPSALVD 1087
E + ++YD +VRD DG++IQF YG D VD+ + S + +FK N D +L+K + L
Sbjct: 1041 ESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDML-- 1098
Query: 1088 HLDVESAXXXXXXXXXXXXXXXXXPHYAQTSKYDPVLSKFNPSKYLGAVSENFQDKLEKF 1147
S Y+ + + + EKF
Sbjct: 1099 ---------------------------------------SGASSYISDLPISLKKGAEKF 1119
Query: 1148 IST---NDDFFKKDENVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNT 1204
+ N+ K V +++ L++ K+ SL PGE VG++A+QSVGEPSTQMTLNT
Sbjct: 1120 VEAMPMNERIASK--FVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNT 1177
Query: 1205 FHFAGHGAANVTLGIPRMREIIMTASAAIKTPQLTMPIRDDVSDELADTFCKNITKVMLS 1264
FH AG G NVTLGIPR++EI+MTA+A IKTP +T P+ + E A+ + K+ ++
Sbjct: 1178 FHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVA 1237
Query: 1265 EVIDKVQVTETIGAQDSSTSSRSYIINVRFFDSEEYLEEYDVTKEELESVIAGKFIKTLE 1324
++I ++++ + + + + + E Y + D+T+E+ E + F++ LE
Sbjct: 1238 DIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLE 1297
Query: 1325 AAIVKEIKK-------QKKTSLPDVGIALPKSQTAMGA--------DERITNVEE-DNDE 1368
AI +K + P G + G D T V++ +D
Sbjct: 1298 DAIETHMKMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQNEDDGDDDGEGTEVDDLGSDA 1357
Query: 1369 EQMRKKSKESVSYDDPDEDE------VETMRQAEQTXXXXXXXXXXXXXXXXXXXXXXXX 1422
++ +K+ + + Y++ EDE + + E
Sbjct: 1358 QKQKKQETDEMDYEENSEDETNEPSSISGVEDPEMDSENEDTEVSKEDTPEPQEESMEPQ 1417
Query: 1423 XRENGKHMTKEQRDRQSALISSTRFVTKYNFDDDEGKWCEFKLELAGDTEKLLMVNIVED 1482
G KEQ ++ + ++ F EG+ E + A D +L+ I +
Sbjct: 1418 KEVKGVKNVKEQSKKKRRKFVRAK-SDRHIFVKGEGEKFEVHFKFATDDPHILLAQIAQQ 1476
Query: 1483 ICRKSIIRQVPHIDRC----------------------VHPEPENGKRVLVTEGVNFQAM 1520
+K I+ I+RC + + + L GV+F A+
Sbjct: 1477 TAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPKERREISNDEKKASPALHASGVDFPAL 1536
Query: 1521 WDQDDFIDINGIRSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMM 1580
W+ D +D+ + SN + +L +GVEAAR TI+ EIN+VF Y ISVS RHL+LIAD M
Sbjct: 1537 WEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYM 1596
Query: 1581 TRQGNYLAFNRQ-GMESSTSSLMKMSYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNG 1639
T G Y +R G+ STS +M++ET +F+ +A E + L++PSA+I +G
Sbjct: 1597 TFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPAL 1656
Query: 1640 VGTGSFDLLSKAPM 1653
GTG FDL+ + +
Sbjct: 1657 SGTGCFDLMQRVEL 1670
>CE22157 [K] KOG0262 RNA polymerase I large subunit
Length = 1737
Score = 834 bits (2154), Expect = 0.0
Identities = 582/1752 (33%), Positives = 854/1752 (48%), Gaps = 183/1752 (10%)
Query: 23 EIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAFLK-NLCATCGLDEKFCPGHQGHIEL 81
EI KLS ++T D +GHPI GGLYD LG ++C TC E+ CPGH GHI+L
Sbjct: 27 EIDKLSVLKITQTKTFDEVGHPIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHIQL 86
Query: 82 PVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVH--LYACKLRLLQYALIDERYQIDNI 139
VP +NPL F Y L+ SC+ CH K V+ + +LR + + + +++I
Sbjct: 87 AVPVFNPLLFQFTYNLLKGSCVHCHRLTCKGDGVNARMLLAQLRCFELGVEHVAFDLESI 146
Query: 140 RINQMVXXXXXXXXXXXXXINGKTTNSSGTQHALRELRRKRNEFVDMAIA----KALSEG 195
+++ + KT N VD IA K LSE
Sbjct: 147 LRDKIANADLFGDD------DSKTFND-----------------VDACIAQLANKPLSEL 183
Query: 196 RTTEHGTFTATVNDERKALIHDFHKRLLSR-PKCDNCGMFSPKFRKDGFTKIFETALTDK 254
+ +V ++ + L R KC C + R DG I +
Sbjct: 184 TAFKSMPTKNSVQLKKDIITEFLRSHLFKRLQKCPLCKNRNGVLRNDGARSILIDFTSGA 243
Query: 255 QITNNRVKGLI-------RQDMIKKKNQMKKLQVNDTSSESASRDEDGEFGTARSPVNLK 307
+ K +I ++ +++ KK +E D + G+ +
Sbjct: 244 RGGGKSKKAIIIIGDNGYNEESSTDEDEEKK---GGGGAEVTGDVVDLDEGSLEMQMK-N 299
Query: 308 PKTGSTYILS---TEVRNILRAVFRSEQEVLQYVF---FSRPNHNKKIVTADMFFMEVLI 361
+TG L+ EVR R +F+++ ++L +F N I D F+E ++
Sbjct: 300 VRTGECDKLAWRGAEVREHFRMLFKNDGKLLLKLFPMLVDELNGEDMICPLDGLFLERIL 359
Query: 362 VPPTRFRLPSKLGDEVHENTQNQXXXXXXXXXXXXRDLNDEMSRLQKDKVSADDRKVIFN 421
VPP +FR +E+ Q +S + K SA +++I N
Sbjct: 360 VPPKKFRPIRMFKGAQYEDPQTLNLRKVLEATETI----SAISLIMKGDTSAQLKELIAN 415
Query: 422 RLM---------NAFVTIQNDVNAFIDSTKAQSSSGNKVPIPGLKQALEKKEGLFRKHMM 472
R+ +A++ +Q NA D + G++ I G+KQ LEKK+GLFR HMM
Sbjct: 416 RVRGKTINAQMHDAYLQLQLRANAIFDQ---DLNKGDRDSIAGIKQILEKKQGLFRMHMM 472
Query: 473 GKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPG 532
GKRVN+A RSVI+PDP ++ +EIG+P +FA KLT+ EPV A+NV E++ + GP + PG
Sbjct: 473 GKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPG 532
Query: 533 ATQIQNEDGSFVSLVGMTLEQRKA---LANQLLTPSTHDVAHSINKKVYRHIKNRDVVIM 589
A G +++G E++K +A L +T ++ + KV RH+KN D+++M
Sbjct: 533 ANFFVEPSGK-KTMLGDKPEEKKRRMQMAKTLNAATTENLRQT--PKVLRHMKNGDMIMM 589
Query: 590 NRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXXXX 649
NRQP+LHK S++GH+ RVL G++ LR++YA AYNADFDGDEMN H Q
Sbjct: 590 NRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVRE 649
Query: 650 XXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHATR 709
S +L P +P+ GLIQDH+ +GV L+ +D F +E + + A
Sbjct: 650 IANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASF------AQY 703
Query: 710 NKLVTIPP-AVMKPEPLWTGKQIITTVLLNTCPANMPGINLNSKNKIKNEYW-------- 760
+K + IPP ++ P+ LWTGKQ+ITT++ N P P INL+ K K W
Sbjct: 704 SKRIEIPPPTILYPKRLWTGKQVITTIVKNCIPDGKPLINLDGKAKTPLSCWIVPGFDAP 763
Query: 761 GKSSEENNVVFKDGQLLCGILDKSQYGASKFGIVHSLHEVYGPDVAAKVLSVLGRLFTNY 820
E++VVF+ G+LL G+LDK+ +GA++FG+ H E+YG ++LS RLFT Y
Sbjct: 764 QFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTY 823
Query: 821 ITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGELLKRLE 880
+ FT G+ D+ + + + R + + S IG L + E+ + L
Sbjct: 824 LQFHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLPDT--ATPAEIKRTLA 881
Query: 881 EILRDDNKLG----ILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGS 936
+ G +LD + + CVP G ++ FP N++Q M SGAKGS
Sbjct: 882 ATYCNPRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQNALQLMIQSGAKGS 941
Query: 937 NVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYY 996
VN QI LGQ LEG+R+ V ++G+TLPSF+ F+ RAGGYI RF +G+ PQE +
Sbjct: 942 AVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELF 1001
Query: 997 FHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAVD 1056
FH MAGREGLIDTAVKTSRSGYLQRC+ K LEG+ + YD++VRD DG++IQF YG D +D
Sbjct: 1002 FHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGMD 1061
Query: 1057 ITKESHMTE--FKFCVDNYDALLKKYNPSALVD-------------------HLDVESAX 1095
TK + + + F DN +A+ P + D +S
Sbjct: 1062 TTKATFLNKKTMPFLEDNLEAVTLASKPEGVTDADFGIKETEKRYKKIVKWKKKAEKSGK 1121
Query: 1096 XXXXXXXXXXXXXXXXPHYAQTSKYDPVL------------SKFNPSKYLGAVSENFQDK 1143
H K + ++ P K AV E F
Sbjct: 1122 SGTKKSYFSAFTNFSAEHIGMEKKRILAMWFELSLEEREQYARGIPKKCPEAVDERFNPT 1181
Query: 1144 L------EKFISTNDDFFKK------DENVNEKKFRALMQLKYMRSLINPGEAVGIIASQ 1191
EK + + F + DE ++ + + K MRSL +PGE VG++A+Q
Sbjct: 1182 CKLGALPEKMLDEIEGFCTRRVKKVDDEEPPKEVLKRTLYWKGMRSLADPGENVGLLAAQ 1241
Query: 1192 SVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQLTMPIRDDVSDELA 1251
S+GEPSTQMTLNTFHFAG G NVTLGIPR+REI+MTAS +I TP ++ + S +
Sbjct: 1242 SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVIAGTSRDRI 1301
Query: 1252 DTFCKNITKVMLSEVIDKVQVTETIGAQDSSTSSRSYIINVRFFDSEE-YLEEYDVTKEE 1310
D+ + + +V L +++ + E I + S R Y + + +E+ L + + +
Sbjct: 1302 DSIKRELDRVYLKQLLKNFSLEEKI-TLTQNQSCRRYHLRIDILAAEKRELGARHLKRSQ 1360
Query: 1311 LESVIAGKFIKTLEAAIVK---EIKKQKKTS---------LPDVGIALPKSQTAMGADER 1358
+ I +FI + AI K EI ++ S + K++ G D
Sbjct: 1361 IMEEIEKRFILRVAQAIKKKYHEITDYQQMSHRTMRQGNMAAGIETGGTKNRGLQGPDNG 1420
Query: 1359 ITNVEE-------DNDEEQMRKKSK-ESVSYDDPDEDEVETMRQAEQTXXXXXXXXXXXX 1410
++ EE D E ++ ++ + E Y+ DE+ VE + E
Sbjct: 1421 DSSDEEADGGREADAAEARLHRRHRDEGADYEGEDEERVEVREEEEPMDSDSEDVKKEGL 1480
Query: 1411 XXXXXXXXXXXXXRENGKHMTKEQRDRQSALISS----TRFVTKYNFDDDEGKWCE--FK 1464
+G+ T E S+ I S + ++ Y +D KWCE F+
Sbjct: 1481 ---------------DGEDQTTEPLLVNSSRIQSVQRLSENISSYTYDVKSNKWCEVVFE 1525
Query: 1465 LELAGDTEKLLMVNIVEDICRKSIIRQVPHIDRCVH-PEPENGKR--VLVTEGVNFQAMW 1521
L L T K+ + +IVE I+ Q P I+RCV E +NGK +L T+GVN A +
Sbjct: 1526 LPLRNKT-KMDVSSIVEKEVELFIVHQTPGIERCVETTEQKNGKEMTILQTQGVNLAAFF 1584
Query: 1522 DQDDFIDINGIRSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMT 1581
D +D+N + SND+ +L+ YGVEA I E+NNVF+ Y I VS RHL L AD MT
Sbjct: 1585 KHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMT 1644
Query: 1582 RQGNYLAFNRQGMESSTSSLMKMSYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVG 1641
G FNR M SS+S L KM++ETT FL +A+L E + + SPSA++VMG L G
Sbjct: 1645 FTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGG 1704
Query: 1642 TGSFDLLSKAPM 1653
TGSFDLL M
Sbjct: 1705 TGSFDLLLDTKM 1716
>Hs7661686 [K] KOG0262 RNA polymerase I large subunit
Length = 1717
Score = 759 bits (1959), Expect = 0.0
Identities = 434/1126 (38%), Positives = 629/1126 (55%), Gaps = 114/1126 (10%)
Query: 11 ITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALG-AFLKNLCATCGLDE 69
+ I F + +++E++KLS K +TNP LD+LG+P GLYDLALG A K +C+TC D
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDF 71
Query: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVHLYACKLRLLQYAL 129
C GH GHIELP+ YNPL F++LY+ LR SCL CH + +HL C+LR+L+
Sbjct: 72 SNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGA 131
Query: 130 IDERYQIDNIRINQMVXXXXXXXXXXXXXINGKTTNSSGTQHALRELRRKRNEFVDMAIA 189
+ Y+++ I + + E+R + ++ +
Sbjct: 132 LQAVYELERILSRFL---------------------EENADPSASEIREELEQYTTEIVQ 170
Query: 190 KALSEGRTTEHGTFTATVNDERKALIHDFHKRLLSRPKCDNCGMFSPKFRKDGFTKIFET 249
L + G V + + LI F K ++ +C +C K G
Sbjct: 171 NNLLGSQ----GAHVKNVCESKSKLIALFWKAHMNAKRCPHC--------KTG------- 211
Query: 250 ALTDKQITNNRVKGLIRQDMIKKKNQMKKLQVNDTSSESASRD---EDGEFGTARSPVNL 306
+ ++R++ K V+ T+ + S E+ + G
Sbjct: 212 ------------RSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIG-------- 251
Query: 307 KPKTGSTYILSTEVRNILRAVFRSEQEVLQYVFFSRPNHNKKI-VTADMFFMEVLIVPPT 365
K G Y+ T R L A++++E L Y+F + + +FF++ L+VPP+
Sbjct: 252 --KRG--YLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPS 307
Query: 366 RFRLPSKLGDEVHENTQNQXXXXXXXXXXXXRDLNDEMSRLQK--------------DKV 411
R R S+LGD++ N Q R L M++ QK D +
Sbjct: 308 RSRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSL 367
Query: 412 SADDRKVI--------FNRLMNAFVTIQNDVNAFIDSTKAQSSSGNKVPIPGLKQALEKK 463
A DR + ++L N ++ +Q+ VN DS + + PG++Q LEKK
Sbjct: 368 IAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDS---EMDKLMRDKYPGIRQILEKK 424
Query: 464 EGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAV 523
EGLFRKHMMGKRV+ ARSVI PD I TNEIG+P VFATKLTYP+PVT +NV ELRQAV
Sbjct: 425 EGLFRKHMMGKRVDSTARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAV 484
Query: 524 INGPDKWPGATQIQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKN 583
INGP+ PGA+ + NEDGS +L + + QR+A+A QLLTP+T K V RH+KN
Sbjct: 485 INGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKN 544
Query: 584 RDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXX 643
D++++NRQPTLH+ S+ H+ R+LP EK LRLHYAN AYNADFDGDEMN HFPQ
Sbjct: 545 GDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELG 604
Query: 644 XXXXXXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPE 703
TD QYL P G P+ GLIQDH+ +G +T++ FFTRE Y + +Y + +
Sbjct: 605 RAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDK 664
Query: 704 DGHATRNKLVTIPPAVMKPEPLWTGKQIITTVLLNTCPANMPGINLNSKNKIKNEYWGKS 763
G R KL++ P+++KP PLWTGKQ+++T+L+N P + +NL+ K KI + W K
Sbjct: 665 VG---RVKLLS--PSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKE 719
Query: 764 SE------------ENNVVFKDGQLLCGILDKSQYGASKFGIVHSLHEVYGPDVAAKVLS 811
+ E+ V+ ++G+LLCG+LDK+ YG+S +G+VH +E+YG + + KVL+
Sbjct: 720 TPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLT 779
Query: 812 VLGRLFTNYITA-TAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKS 870
L RLFT Y+ FT G++D+ + + + R I++ S G A NL +
Sbjct: 780 CLARLFTAYLQLYRGFTLGVEDILVKPKRDVKRQRIIEESTHCGPQAVRAALNLPEAASY 839
Query: 871 DDGELLKRLEEILRDDNKLGILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMAL 930
D+ + + +D ++D +VN ++++ C+P G ++FP N++Q M
Sbjct: 840 DEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENTLQLMVQ 899
Query: 931 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGI 990
SGAKGS VN QI CLLGQ LEGR P+M SGK+LP F+P+E RAGG++ GRF +GI
Sbjct: 900 SGAKGSTVNTMQISCLLGQIELEGRSTPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI 959
Query: 991 RPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLY 1050
+P E++FHCMAGREGL+DTAVKTSRSGYLQRC+ K LEG+ + YD +VRD DG+++QFLY
Sbjct: 960 KPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY 1019
Query: 1051 GGDAVDITKESHM--TEFKFCVDNYDALLKKYNPSALVDHLDVESA 1094
G D +DI K + +F F NY+ ++K + ++ D + A
Sbjct: 1020 GEDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKA 1065
Score = 281 bits (718), Expect = 8e-75
Identities = 183/570 (32%), Positives = 287/570 (50%), Gaps = 45/570 (7%)
Query: 1121 DPVLSKFNPSKYLGAVSENFQDKLEKF----ISTNDDFFKKDENVNEKKFRALMQLKYMR 1176
DP LS + P Y +VSE F+ K++ + + + ++K E ++ + R L+QLK+ R
Sbjct: 1145 DPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKSE-LSLDRLRTLLQLKWQR 1203
Query: 1177 SLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTP 1236
SL PGEAVG++A+QS+GEPSTQMTLNTFHFAG G NVTLGIPR+REI+M ASA IKTP
Sbjct: 1204 SLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTP 1263
Query: 1237 QLTMPIRDDVSD-ELADTFCKNITKVMLSEVIDKVQVTETIGAQDSSTSSRSYIINVRFF 1295
+++P+ + + + K +T+V L EV+ K+ V E+ ++ + Y + +F
Sbjct: 1264 MMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFL 1323
Query: 1296 DSEEYLEEYDVTKEELESVIAGKFIKTLEAAIVKEIKKQKKTSLPDVGIALPKSQTAMGA 1355
Y +E + E++ + +F K L +I K+ K + A + G
Sbjct: 1324 PHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAFRNVNTRRATQRDLDNAGE 1383
Query: 1356 DERITNVEEDNDEEQ-------------------MRKKSKESVSYDDPDEDEVETMRQ-- 1394
R +E ++EE+ ++K +E V Y+ +E+E E
Sbjct: 1384 LGRSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEEREGEENDD 1443
Query: 1395 -------------AEQTXXXXXXXXXXXXXXXXXXXXXXXXXRENGKHMTKEQRDRQSAL 1441
A +T + G + R A+
Sbjct: 1444 EDMQEERNPHREGARKTQEQDEEVGLGGPVPSHPPDAAPETHPQPGAPGAEAMERRVQAV 1503
Query: 1442 ISSTRFVTKYNFDDDEGKWCEFKLELAGDTEKLLMVNIVEDICRKSIIRQVPHIDRCVHP 1501
F+ Y +D +E WC+ ++L M ++V + ++I I RC+
Sbjct: 1504 REIHPFIDDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHGAVIYATKGITRCLLN 1563
Query: 1502 EPENGKR----VLVTEGVNFQAMWDQDDFIDINGIRSNDVAAVLKTYGVEAARNTIVNEI 1557
E N K VL TEG+N ++ + +D+ + SND+ A+ TYG+EA R I EI
Sbjct: 1564 ETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEALR-VIEKEI 1622
Query: 1558 NNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGMESSTSSLMKMSYETTCQFLTKAV 1617
+VF+ Y I+V RHL L+AD M +G Y NR G+ S++S L +M++ET+ QFL +A
Sbjct: 1623 KDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQAT 1682
Query: 1618 LDNEHEELKSPSAKIVMGKLNGVGTGSFDL 1647
+ H+EL+SPSA +V+GK+ GTG F+L
Sbjct: 1683 MLGSHDELRSPSACLVVGKVVRGGTGLFEL 1712
>ECU04g1400 [K] KOG0262 RNA polymerase I large subunit
Length = 1395
Score = 758 bits (1958), Expect = 0.0
Identities = 533/1647 (32%), Positives = 803/1647 (48%), Gaps = 280/1647 (17%)
Query: 13 SIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAF-LKNLCATCGLDEKF 71
+I F + +EI + S +V P D GHPI+GGLYDL +G L + C TC L
Sbjct: 9 NISFGSYSDEEIERNSCMEVVVPGCFDKFGHPIRGGLYDLRMGPLDLSSNCKTCNLSFLN 68
Query: 72 CPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVHLYACKLRLLQYALID 131
CPGH GHI+L NP+FF+ L+ +R C C HFR+ + + + CK LL
Sbjct: 69 CPGHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRITNYDRLILFCKFSLL------ 122
Query: 132 ERYQIDNIRINQMVXXXXXXXXXXXXXINGKTTNSSGTQHALRELRRKRNEFVDMAIAKA 191
+NG+ + + E + + K
Sbjct: 123 ---------------------------LNGEEAEDLDRLYMVSE---------EEELYKI 146
Query: 192 LSEGRTTEHGTFTATVNDERKALIHDFHKRLLSRPKCDNCGMFSPKFRKDGFTKIFETAL 251
+SE + + + + ++H F + SR KC CG +PK K K+ +
Sbjct: 147 VSERIENAKKNRSEPLMESHQEVVHRFLQNAGSRRKCVRCGHSNPKIVKGAKMKVLKD-- 204
Query: 252 TDKQITNNRVKGLIRQDMIKKKNQMKKLQVNDTSSESASRDEDGEFGTARSPVNLKPKTG 311
++K N+ +DEDG+ SP
Sbjct: 205 ------------------LRKGNE---------------KDEDGKDLEFLSP-------- 223
Query: 312 STYILSTEVRNILRAVFRSEQEVLQYVFFSRPNHNKKIVTADMFFMEVLIVPPTRFRLPS 371
VR ++ +F +E ++++ +FF R MFF+ L V P RFR
Sbjct: 224 ------DAVRELMDDLFSNEADLIESIFFRRD--------PGMFFISNLPVIPNRFRPMI 269
Query: 372 KLGDEVHENTQNQXXXXXXXXXXXXRDLNDEMSRLQKDKVSADDRKVIFNRLMNAFVTIQ 431
L + EN Q LND + +VS V+ + ++ + +Q
Sbjct: 270 VLDGKKAENFQTLY-------------LNDIL------RVS-----VLVTKDLSYWPELQ 305
Query: 432 NDVNAFIDSTKAQSSSGNKVPIPGLKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIE 491
+ + D+ S ++ PG KQ LE+K+GLFR+++MGKRVN+AAR+VISPDPN+E
Sbjct: 306 AAILSSFDNKNISKWSRTRMVPPGHKQILERKDGLFRRNIMGKRVNFAARTVISPDPNLE 365
Query: 492 TNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQIQNEDGSFVSLVGMTL 551
T EIG+P VFA LT+PE ++NV L++AV+NGP +PG+ +Q+ D +SL M
Sbjct: 366 TREIGIPLVFAEALTFPERAASFNVDRLKKAVVNGPT-YPGSLYLQDGD-VMLSLAHMPD 423
Query: 552 EQRKALANQLLTPSTHDVAHSINKKVYRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGE 611
E+R ALANQLL K V+RH+ + DVV+MNRQPTLH+ S+M HK RVL E
Sbjct: 424 EKRYALANQLLDGK---------KVVWRHLVDGDVVLMNRQPTLHRPSIMAHKCRVLRKE 474
Query: 612 KTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXXXXXXXTDSQYLTPTSGSPVRGLIQ 671
+TLR+HYAN +YNADFDGDEMN+HFPQ DS YL PT+G P+RGL+Q
Sbjct: 475 RTLRMHYANCKSYNADFDGDEMNVHFPQNYASEAESRHIVMNDSNYLVPTNGKPIRGLVQ 534
Query: 672 DHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHATRNKLVTIPPAVMKPEPLWTGKQI 731
DHI LT KDSFF+ E Y + + + ++V P ++KP L++G+Q+
Sbjct: 535 DHIVIVTVLTMKDSFFSEEDYFTLV-------NAGLSDRRIVLDRPCIVKPARLYSGRQV 587
Query: 732 ITTVLLNTCPANMPGINLNSKNKIKNEYWGKSSEENNVVFKDGQLLCGILDKSQYGASKF 791
I+T+L N +N+ + + W + SEE + ++G ++ GILDK+ G +
Sbjct: 588 ISTILKNLGLV----VNIEIETNVPKNAWREHSEERILRIREGNIVTGILDKNSLGPTFK 643
Query: 792 GIVHSLHEVYGPDVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSV 851
++H+ E+ G + +L+ +G + Y+ FT G+DDL L E +K R ++++
Sbjct: 644 SLIHACGEIKGFATSNDLLTYIGWVGNRYLLMYGFTIGIDDLLLDKEADKKRREVVRVK- 702
Query: 852 DIGRVAAAEVTNLDKDVKSDDGELLKRLEEILRDDNKLGILDAITSSKVNSITSQVVSKC 911
D++ K ++ + +K LD++ +++NS+TS++V
Sbjct: 703 -------------DQEAKELQRRYVEANPDFYLYADKKAYLDSVMRTEMNSVTSEIVKVS 749
Query: 912 VPDGTMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKP 971
VP G K FP N+M+ + +G+KGS VN+SQI LGQQ LEG+RVP+M SGKTLP F
Sbjct: 750 VPSGLQKSFPENNMELIIATGSKGSIVNLSQISGALGQQELEGQRVPIMASGKTLPCFAA 809
Query: 972 FETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVH 1031
+ +GGYI RF +GI +Y+FHCMAGREGLIDTA+KT+ SGYLQRCL K +E
Sbjct: 810 LDPSPSSGGYIYHRFLTGIDLPQYFFHCMAGREGLIDTAIKTANSGYLQRCLIKHMEEAK 869
Query: 1032 ISYDNSVRDGDGTLIQFLYGGDAVDITKESHMTEFKFCVDNYDALLKKYNPSALVDHLDV 1091
+ YD SVR G +IQF+YG D +D TK S++ + +F N +L +++V L+
Sbjct: 870 VEYDMSVRIGK-RVIQFMYGEDGLDCTKSSYLDDAEFFKRN---VLLFGKSASIVSKLE- 924
Query: 1092 ESAXXXXXXXXXXXXXXXXXPHYAQTSKYDPVLSKFNPSKYLGAVSENFQDKLEKFISTN 1151
+Y LS K K I
Sbjct: 925 --------------------------DRYKDFLSL----------------KFRKQIDLL 942
Query: 1152 DDFFKKDENVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHG 1211
DD + R + +Y+ SL +PGE+VG+IA+QSVGEPSTQMTLNTFH AG G
Sbjct: 943 DD-----------ELRRFLADRYICSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGVG 991
Query: 1212 AANVTLGIPRMREIIMTASAAIKTPQLTMPIRDDVSDELADTFCKNITKVMLSEVIDKVQ 1271
A NVTLG+PR+REI++TAS +I+TP +T+PI+ VS ++ + + +V L + + +
Sbjct: 992 AKNVTLGVPRLREILITASKSIRTPLITVPIKRRVSFDITEC----LRRVTLKDCVKRFG 1047
Query: 1272 VTETIGAQDSSTSSRSYIINVRFFDSEEYLEEYDVTKEELESVIAGKFIKTLEAAIVKEI 1331
VTE I +++ F + + E D + V+ KF+K L +K +
Sbjct: 1048 VTEEI-----------VMVSGVFQKKVKIMFELDNFVDLAGEVLDRKFLKLL-GNKMKGL 1095
Query: 1332 KKQKKTSLPDVGIALPKSQTAMGADERITNVEEDNDEEQMRKKSKESVSYDDPDEDEVET 1391
K K T +G++ DE N ED + KES DP+ D V
Sbjct: 1096 AKAKYT----LGMSEAPKDDCKEVDENKENEGEDESD-----SDKES----DPEGDNV-- 1140
Query: 1392 MRQAEQTXXXXXXXXXXXXXXXXXXXXXXXXXRENGKHMTKEQRDRQSALISSTRFVTKY 1451
+ + + T+E+ D + S +T
Sbjct: 1141 ---CLEATTGENGDKDSEDHSTSYLEATDETDQTDDSGNTEEEEDFMNFAKKSKNVLT-- 1195
Query: 1452 NFDDDEGKWCEFKLELAGDTEKLLMVNIVEDICRKSIIRQVPHIDRCVHPEPENGKRVLV 1511
F++ +++ ++VE I ++R+V +++ +G ++ V
Sbjct: 1196 -----------FEILYPSGFNEMIS-SVVESILPTIVVREVKGMEKA----SVSGSQLFV 1239
Query: 1512 TEG----------VNFQAMWDQDDFIDINGIRSNDVAAVLKTYGVEAARNTIVNEINNVF 1561
V+ D D +DI SND+ V T GVEAAR+ I+NE+ VF
Sbjct: 1240 KSSSIYSLTRMIEVSPGVYEDLLDILDIYNAESNDIYDVYLTLGVEAARHAIINEVVKVF 1299
Query: 1562 SRYAISVSFRHLDLIADMMTRQGNYLAFNRQGMESSTSSLMKMSYETTCQFLTKAVLDNE 1621
Y IS+ RHL LIAD MTR+G+Y F+R G+ + S + ++S+E+ A +
Sbjct: 1300 DVYGISIDIRHLLLIADYMTRKGSYSPFSRHGLGADDSPIQRISFESCYSNFKTAATFHL 1359
Query: 1622 HEELKSPSAKIVMGKLNGVGTGSFDLL 1648
++L +PSA + +G GTG FDL+
Sbjct: 1360 EDKLSNPSASLTVGNPVRCGTGCFDLI 1386
>7303170 [K] KOG0262 RNA polymerase I large subunit
Length = 1642
Score = 602 bits (1552), Expect = e-171
Identities = 324/785 (41%), Positives = 468/785 (59%), Gaps = 45/785 (5%)
Query: 315 ILSTEVRNILRAVFRSEQEVLQYVFFSRPNHNKKIVTAD-----MFFMEVLIVPPTRFRL 369
I + E R LR ++ + E+L+ + N + D +FFM+ L V P R R
Sbjct: 250 IFADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFMDTLPVTPPRARP 309
Query: 370 PSKLGDEVHENTQN-------QXXXXXXXXXXXXRDLNDEMSRLQKDKVSADDRKVIFNR 422
+ +GD + N Q + + ++++ K + +
Sbjct: 310 LNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETAHEK 369
Query: 423 LMNAFVTIQNDVNAFIDSTKAQSSSGNKVPIPGLKQALEKKEGLFRKHMMGKRVNYAARS 482
L A++ +Q V+ +D ++ + GLKQ +EKK GL R HMMGKRVNYAAR+
Sbjct: 370 LYTAWLALQMSVDVLLDVNMSREMKSGE----GLKQIIEKKSGLIRSHMMGKRVNYAART 425
Query: 483 VISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQIQNEDGS 542
VI+PDPNI +EIG+P +FA KL+YP PVT +NV ELR+ V+NGPD PGA IQ+++G
Sbjct: 426 VITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGF 485
Query: 543 FVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKNRDVVIMNRQPTLHKASMMG 602
+ +R++LA LL+ + K V+RH+ N DV+++NRQP+LHK S+MG
Sbjct: 486 TTYIPADNASKRESLAKLLLSNPKDGI-----KIVHRHVLNGDVLLLNRQPSLHKPSIMG 540
Query: 603 HKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXXXXXXXTDSQYLTPTS 662
HK R+L GEKT RLHY+N AYNADFDGDEMN H+PQ S YL P
Sbjct: 541 HKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKD 600
Query: 663 GSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHATRNKLVTIPPAVMKP 722
G+P+ GLIQDH+ +GV L+ + FF RE YQQ ++ + + + +PP ++KP
Sbjct: 601 GTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQ-----LKKDIKLLPPTILKP 655
Query: 723 EPLWTGKQIITTVLLNTCPANMPGINLNSKNKIKNEYW---------------GKSSEEN 767
LW+GKQI++T+++N P INL+S KI + W G E+
Sbjct: 656 AVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGTNPEGNDLSES 715
Query: 768 NVVFKDGQLLCGILDKSQYGASKFGIVHSLHEVYGPDVAAKVLSVLGRLFTNYITATAFT 827
V ++G+LL G+LDK QYGA+ +G++H ++E+YG DV+ +L+ ++FT ++ FT
Sbjct: 716 QVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFT 775
Query: 828 CGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGELLKRLEEILRDDN 887
G+ D+ +T ++ R I++ ++G A A L+ + D EL++++E D+
Sbjct: 776 LGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHD--ELVEKMEAAYVKDS 833
Query: 888 KLGIL-DAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGSNVNVSQIMCL 946
K +L D S ++ T+ + S C+P G + KFP N++Q M LSGAKGS VN QI CL
Sbjct: 834 KFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCL 893
Query: 947 LGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGL 1006
LGQ LEG+R P+M+SGK+LPSF FET ++GG+I GRF +GI+PQ+++FHCMAGREGL
Sbjct: 894 LGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGL 953
Query: 1007 IDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAVDITKESHMTEF 1066
IDTAVKTSRSGYLQRCL K LEG+ + YD +VRD D +++QFLYG D +DI K +
Sbjct: 954 IDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFND- 1012
Query: 1067 KFCVD 1071
KFC D
Sbjct: 1013 KFCAD 1017
Score = 285 bits (730), Expect = 3e-76
Identities = 183/542 (33%), Positives = 289/542 (52%), Gaps = 35/542 (6%)
Query: 1121 DPVLSKFNPSKYLGAVSENFQDKLEKFISTNDDFFKKDENVNEKKFRALMQLKYMRSLIN 1180
DP ++ + Y G+VSE + K I+ D+ K+ + E +M++K ++SL
Sbjct: 1122 DPTVAVYKQDLYYGSVSE----RTRKLIT---DYAKRKPALKET-IADIMRVKTIKSLAA 1173
Query: 1181 PGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQLTM 1240
PGE VG+IA+QS+GEPSTQMTLNTFHFAG G NVTLGIPR+REI+M AS+ IKTP + +
Sbjct: 1174 PGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDI 1233
Query: 1241 PIRDDVSDELADTFCKNITKVMLSEVIDKVQVTETIGAQDSSTSSRSYIINVRFFDSEEY 1300
PI+ + A+ N+ V L+ +++ V V+ G S Y + +F E Y
Sbjct: 1234 PIKPGQQHQ-AEKLRINLNSVTLANLLEYVHVST--GLTLDPERSYEYDMRFQFLPREVY 1290
Query: 1301 LEEYDVTKEELESVIAGKFIKTLEAAIVKEIKKQKKTSLPDVGIALPKSQTAMGADERIT 1360
E+Y V + + + F K L AI+K + T + + D++
Sbjct: 1291 KEDYGVRPKHIIKYMHQTFFKQLIRAILKVSNASRTTKIVVID------------DKKDA 1338
Query: 1361 NVEEDND----EEQMRKKSK--ESVSYDDPDEDE-----VETMRQAEQTXXXXXXXXXXX 1409
+ E+DND +E R K+K + S DD D+D+ ++ + E+
Sbjct: 1339 DKEDDNDLDNGDEVGRSKAKANDDDSSDDNDDDDATGVKLKQRKTDEKDYDDPDDVEELH 1398
Query: 1410 XXXXXXXXXXXXXXRENGKHMTKEQRDRQSA-LISSTRFVTKYNFDDDEGKWCEFKLELA 1468
E G+ D ++ + S V Y +D + WC+ KL L+
Sbjct: 1399 DANDDDDEAEDEDDEEKGQDGNDNDGDDKAVERLLSNDMVKAYTYDKENHLWCQVKLNLS 1458
Query: 1469 GDTEKLLMVNIVEDICRKSIIRQVPHIDRCVHPEPENGKRVLVTEGVNFQAMWDQDDFID 1528
+K + +I+ ++ KS++ QV HI R + + + ++L T+G+N M+ + +D
Sbjct: 1459 VRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGTDDDQLLKTDGINIGEMFQHNKILD 1518
Query: 1529 INGIRSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLA 1588
+N + SND+ A+ +TYG+EAA IV E++NVF Y I+V RHL LIAD MT G +
Sbjct: 1519 LNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQP 1578
Query: 1589 FNRQGMESSTSSLMKMSYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLL 1648
+R+GME S+S L +MS+E++ QFL A +EL SPS+++++G GTG+F+LL
Sbjct: 1579 LSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELL 1638
Query: 1649 SK 1650
+K
Sbjct: 1639 TK 1640
Score = 97.1 bits (240), Expect = 2e-19
Identities = 53/128 (41%), Positives = 73/128 (56%), Gaps = 8/128 (6%)
Query: 12 TSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAFLKNL--CATCGLDE 69
+ ++F+V T EIRKLS +V D LGH I GGLYD+ +G++ + + C TC L
Sbjct: 14 SDLEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC-LKL 72
Query: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVHLYACKLRLLQYAL 129
+ CPGH GHIEL P YNP F + L CL C+ ++K E C++ +LQ L
Sbjct: 73 QDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHE-----CEIIMLQLRL 127
Query: 130 IDERYQID 137
ID Y I+
Sbjct: 128 IDAGYIIE 135
>Hs5902062 [K] KOG0261 RNA polymerase III large subunit
Length = 1391
Score = 414 bits (1063), Expect = e-115
Identities = 329/1063 (30%), Positives = 503/1063 (46%), Gaps = 119/1063 (11%)
Query: 228 CDNCGMFSPKFRKDGFTKIFETALTDKQITNNRVKGLIRQDMIKKKNQMKKLQVNDTSSE 287
C +CG F+ +K G KI +K TN +V I + LQ +T+ E
Sbjct: 156 CHHCGAFNGTVKKCGLLKIIH----EKYKTNKKVVDPIVSNF---------LQSFETAIE 202
Query: 288 SASRDEDGEFGTARSPVNLKPKTGSTYILSTEVRNILRAVFRSEQEVLQYVFFSRPNHNK 347
+++ E R+ NL P V N+ + + + +L P K
Sbjct: 203 ---HNKEVEPLLGRAQENLNPLV---------VLNLFKRIPAEDVPLL----LMNPEAGK 246
Query: 348 KIVTADMFFMEVLIVPPTRFRLPSKLGDEVHENTQNQXXXXXXXXXXXXRDLNDEMSRLQ 407
+D+ L+VPP FR PS + D + T D+ ++
Sbjct: 247 P---SDLILTR-LLVPPLCFR-PSVVSD-LKSGTNEDDLTMKLTEIIFLNDV------IK 294
Query: 408 KDKVSADDRKVIFNRLMNAFVTIQNDVNAFIDSTKA--QSSSGNKVPIPGLKQALEKKEG 465
K ++S ++I M + +Q +I+S + + K G Q L+ K+G
Sbjct: 295 KHRISGAKTQMI----MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQG 350
Query: 466 LFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVIN 525
FR ++ GKRV+++ R+VISPDPN+ +E+ VP A LT+PE V N+ LR+ V N
Sbjct: 351 RFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQN 410
Query: 526 GPDKWPGATQIQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKNRD 585
GP+ PGA IQ + R+ +A +L V RH+ + D
Sbjct: 411 GPEVHPGANFIQQRHTQMKRF--LKYGNREKMAQEL----------KYGDIVERHLIDGD 458
Query: 586 VVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXX 645
VV+ NRQP+LHK S+M H RV P +T R + YNADFDGDEMN+H PQ
Sbjct: 459 VVLFNRQPSLHKLSIMAHLARVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKA 517
Query: 646 XXXXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDG 705
T + +TP +G P+ IQD ++ LT KD+FF R + Q I + +D
Sbjct: 518 EALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKD- 576
Query: 706 HATRNKLVTIPPAVMKPEPLWTGKQIITTVLLNTCPANMPGINLNSKNKIKNEYWGKSSE 765
+ K+ PP ++KP LWTGKQI +V+L N NL +K K +Y GK +
Sbjct: 577 --EKIKVRLPPPTILKPVTLWTGKQIF-SVILRPSDDNPVRANLRTKGK---QYCGKGED 630
Query: 766 ----ENNVVFKDGQLLCGILDKSQYGA-SKFGIVHSLHEVYGPDVAAKVLSVLGRLFTNY 820
++ V ++ +L+ G +DK G+ SK I + L +G + AA +S L RL Y
Sbjct: 631 LCANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVY 690
Query: 821 ITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGELLKRLE 880
++ F+ G+ D+ K + ++L A D+ +++ + L++
Sbjct: 691 LSNRGFSIGIGDVTPGQGLLKAKYELLN----------AGYKKCDEYIEALNTGKLQQQP 740
Query: 881 EILRDDNKLGILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGSNVNV 940
++ L+A+ +++ I S C+ + NS MAL G+KGS +N+
Sbjct: 741 GCTAEET----LEALILKELSVIRDHAGSACLRELDKS----NSPLTMALCGSKGSFINI 792
Query: 941 SQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYYFHCM 1000
SQ++ +GQQA+ G RVP ++LP F+ A G++ FYSG+ P E++FH M
Sbjct: 793 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTM 852
Query: 1001 AGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAVD---I 1057
AGREGL+DTAVKT+ +GY+QR L K LE + YD +VR G +IQF+YGGD +D +
Sbjct: 853 AGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAM 912
Query: 1058 TKESHMTEFKFCVDNYDALLKKYNPSALVDHLDVESAXXXXXXXXXXXXXXXXXPHYAQT 1117
+ EFK +DN A+ P L + Q
Sbjct: 913 EGKDEPLEFKRVLDNIKAVF----PCPSEPALSKNELILTTESIMKKSEFLCCQDSFLQE 968
Query: 1118 SKYDPVLSKFNPSKYLGAVSENFQDKLEKFISTNDD-------FFKKDE--NVNEKKFRA 1168
K K++ VSE + +K+ ND+ ++ D +KF
Sbjct: 969 IK-----------KFIKGVSEKIKKTRDKY-GINDNGTTEPRVLYQLDRITPTQVEKFLE 1016
Query: 1169 LMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMT 1228
+ KYMR+ + PG AVG + +QS+GEP TQMTL TFHF G + N+TLG+PR++EII
Sbjct: 1017 TCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFGGVASMNITLGVPRIKEII-N 1075
Query: 1229 ASAAIKTPQLTMPIRDDVSDELADTFCKNITKVMLSEVIDKVQ 1271
AS AI TP +T + D + A I K +L E+ + ++
Sbjct: 1076 ASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIE 1118
Score = 84.0 bits (206), Expect = 2e-15
Identities = 60/173 (34%), Positives = 92/173 (52%), Gaps = 10/173 (5%)
Query: 1486 KSIIRQVPHIDRCV-HPEPENGKRV--LVTEGVNFQAMWDQDDFIDINGIR--SNDVAAV 1540
K +++ +P + R V H + ++GK L+ EG N +A+ + G R SN+ V
Sbjct: 1198 KVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHG---VKGTRTTSNNTYEV 1254
Query: 1541 LKTYGVEAARNTIVNEIN-NVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGM-ESST 1598
KT G+EAAR TI+NEI + + +S+ RH+ L++D+MT +G L R G+ +
Sbjct: 1255 EKTLGIEAARTTIINEIQYTMVVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKE 1314
Query: 1599 SSLMKMSYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLLSKA 1651
S LM S+E T L A + + + S I+MG +GTG F LL KA
Sbjct: 1315 SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKA 1367
Score = 54.3 bits (129), Expect = 2e-06
Identities = 33/111 (29%), Positives = 56/111 (49%), Gaps = 3/111 (2%)
Query: 7 VGAEITSIDFSVLTSDEIRKLSAKQVTNPTVL--DNLGHPIQGGLYDLALGAFLKNL-CA 63
V + + I F + + +E+R+ + QV + + DN P+ G+ D +G K+ C
Sbjct: 11 VAKKTSHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRPCE 70
Query: 64 TCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSE 114
TCG + C GH G+I+L +PC++ +F + L+ C C H L E
Sbjct: 71 TCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEE 121
>YOR116c [K] KOG0261 RNA polymerase III large subunit
Length = 1460
Score = 399 bits (1025), Expect = e-110
Identities = 295/917 (32%), Positives = 448/917 (48%), Gaps = 106/917 (11%)
Query: 415 DRKVIFNRLMNAFVTIQNDVNAFIDSTKAQ-------SSSGNKV-PIPGLKQALEKKEGL 466
D+ + N +M + +Q V +I+S S+ G KV PI G Q L+ K+G
Sbjct: 304 DKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGR 363
Query: 467 FRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVING 526
FR ++ GKRV+++ R+VISPDPN+ +E+ VP A LTYPE VT YN +L++ ++NG
Sbjct: 364 FRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNG 423
Query: 527 PDKWPGATQI--QNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKNR 584
P+ PGA + +NED G R LA L I V RH+++
Sbjct: 424 PNVHPGANYLLKRNEDARRNLRYG----DRMKLAKNL----------QIGDVVERHLEDG 469
Query: 585 DVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXX 644
DVV+ NRQP+LH+ S++ H ++ P +T RL+ YNADFDGDEMN+H PQ
Sbjct: 470 DVVLFNRQPSLHRLSILSHYAKIRPW-RTFRLNECVCTPYNADFDGDEMNLHVPQTEEAR 528
Query: 645 XXXXXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPED 704
+ LTP SG P+ QD I+ ++ KDSF+ R Q + D
Sbjct: 529 AEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLS---MMSD 585
Query: 705 GHATRNKLVTIPPAVMKPEPLWTGKQIITTVLLNTCPANMPG-INLNSKNKI----KNEY 759
G PPA+MKP LWTGKQ+ + LL N P INL++KNK+ K++
Sbjct: 586 GI---EHFDIPPPAIMKPYYLWTGKQVFS--LLIKPNHNSPVVINLDAKNKVFVPPKSKS 640
Query: 760 WGKSSEENN--VVFKDGQLLCGILDKSQYG-ASKFGIVHSLHEVYGPDVAAKVLSVLGRL 816
+N+ V+ + Q+L G++DKS G K + +++ YGP AA ++ + +L
Sbjct: 641 LPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKL 700
Query: 817 FTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGELL 876
++ F+ G++D+ A+ K + + L V+I E+ L + GEL
Sbjct: 701 CARFLGNRGFSIGINDVT-PADDLKQKKEEL---VEIAYHKCDELITL-----FNKGEL- 750
Query: 877 KRLEEILRDDNKLGILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGS 936
E N+ L+A ++ + +V C+ + +N+ MA G+KGS
Sbjct: 751 ----ETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELDN----WNAPLIMATCGSKGS 802
Query: 937 NVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYY 996
+NVSQ++ ++GQQ + G RVP ++LP F ++ G+++ F+SG+ P E+
Sbjct: 803 TLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFL 862
Query: 997 FHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGG---D 1053
FH ++GREGL+DTAVKT+ +GY+ R L K LE + YDN+VR ++QF YGG D
Sbjct: 863 FHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLD 922
Query: 1054 AVDITKESHMTEFKFCVD--------NYDALLKKY---------------------NPSA 1084
+++ + F D N D L Y N
Sbjct: 923 PLEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGC 982
Query: 1085 LVDHLDVESAXXXXXXXXXXXXXXXXXPHY-------AQTSKYDPVLSKFNP-SKYLGAV 1136
LV D+ A + A K +L P +K L +
Sbjct: 983 LVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGMLGLLEPPAKELQGI 1042
Query: 1137 S--ENFQDKLEKFISTNDDFFKKDENVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVG 1194
E D ++ +S ++ E + +KF + KY ++ + PG A+G I +QS+G
Sbjct: 1043 DPDETVPDNVKTSVS---QLYRISEK-SVRKFLEIALFKYRKARLEPGTAIGAIGAQSIG 1098
Query: 1195 EPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQLTMPIRDDVSDELADTF 1254
EP TQMTL TFHFAG + NVTLG+PR++EII AS I TP + + +D + A
Sbjct: 1099 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIINAVLVNDNDERAARVV 1157
Query: 1255 CKNITKVMLSEVIDKVQ 1271
+ K +LS+V VQ
Sbjct: 1158 KGRVEKTLLSDVAFYVQ 1174
Score = 87.0 bits (214), Expect = 2e-16
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 1488 IIRQVPHIDRCVHPEPENGKRVLVTEGVNFQAMWDQDDFIDINGIRSNDVAAVLKTYGVE 1547
+++ +P I R V ++GKR L+ EG + + D I + +N V V G+E
Sbjct: 1271 VVKGLPDISRAVINIRDDGKRELLVEGYGLRDVMCTDGVIG-SRTTTNHVLEVFSVLGIE 1329
Query: 1548 AARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGMESSTSSLMKM-SY 1606
AAR +I+ EIN S + +SV RH+ L+ D+MT +G L R G+ S++++ S+
Sbjct: 1330 AARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASF 1389
Query: 1607 ETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLL 1648
E T L A + + ++ S I++G+ +GTGSF ++
Sbjct: 1390 EKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVV 1431
>SPBC651.08c [K] KOG0261 RNA polymerase III large subunit
Length = 1405
Score = 391 bits (1005), Expect = e-108
Identities = 282/893 (31%), Positives = 443/893 (49%), Gaps = 101/893 (11%)
Query: 421 NRLMNAFVTIQNDVNAFIDSTKA--QSSSGNKVPIPGLKQALEKKEGLFRKHMMGKRVNY 478
+ LM + +Q + +I+S + S PI G Q L+ K+G FR ++ GKRV++
Sbjct: 298 SNLMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDF 357
Query: 479 AARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQIQN 538
+ R+VISPDPN+ +++ VP A LT+PE VT N L+ + NGPD PGA + +
Sbjct: 358 SGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVID 417
Query: 539 EDGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKNRDVVIMNRQPTLHKA 598
+ F + R +A+ L I V RH+ + DVV+ NRQP+LHK
Sbjct: 418 RESGFKRF--LRFGNRNRIADDL----------KIGDIVERHLHDNDVVLFNRQPSLHKL 465
Query: 599 SMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXXXXXXXTDSQYL 658
S+M H V+V P +TLR + G YNADFDGDEMN+H PQ + +
Sbjct: 466 SIMAHLVKVRPW-RTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLV 524
Query: 659 TPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHATRNKLVTIPPA 718
+P +G P+ QD I+A L+ KD+F R+ C D + PPA
Sbjct: 525 SPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNI---CCYMMDAST---HIDLPPPA 578
Query: 719 VMKPEPLWTGKQIITTVLLNTCPANMPGINLNSKNKIKNEYWGKSSE----ENNVVFKDG 774
++KP LWTGKQ+ T VL+ + +NL++K + + K+ E + ++ ++
Sbjct: 579 IIKPRCLWTGKQVFT-VLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNS 637
Query: 775 QLLCGILDKSQYG-ASKFGIVHSLHEVYGPDVAAKVLSVLGRLFTNYITATAFTCGMDDL 833
+++ G++DKS G K + + + YG AA+ ++ L ++ ++ F+ G++D+
Sbjct: 638 EIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDV 697
Query: 834 RLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGELLKRLEEILRDD---NKLG 890
+ + + +IL ++K + D +++ + IL ++
Sbjct: 698 Q-PGKSLSSQKEIL----------------VNKAYATSDDFIMQYAKGILECQPGMDQEA 740
Query: 891 ILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQ 950
L+A SS ++ + V C+ + P NS MA G+KGS +NVSQ++ +GQQ
Sbjct: 741 TLEAKISSTLSKVRDDVGEICMDE----LGPANSPLIMATCGSKGSKINVSQMVACVGQQ 796
Query: 951 ALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGLIDTA 1010
+ G+RVP ++LP F A G++ FYSG+ P E+ FH ++GREGL+DTA
Sbjct: 797 IISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTA 856
Query: 1011 VKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAVDIT---KESHMTEFK 1067
VKT+ +GY+ R L K LE + +YD +VR + ++QF+YG D +D T + EFK
Sbjct: 857 VKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFK 916
Query: 1068 ----FCVD-NYDALLKKYNPSALVDHLDVESAXXXXXXXXXXXXXXXXXPHYAQTSKYD- 1121
V+ NYD P ++D+++ P + D
Sbjct: 917 RTWIHSVNLNYDRHDSAMLPYEIIDYVN----------------RALDDPKFLTNCNRDF 960
Query: 1122 -PVLSKF---NPSKYLGAVSE--NFQDKLEKFISTNDDFFKKDE--------------NV 1161
+ F N +KYL +V E + LE+ + D + DE V
Sbjct: 961 IETIRTFVIENIAKYLASVRERRDLAPMLEEPDMDDLDDMEGDEFAPVAKRKSVENIIRV 1020
Query: 1162 NEKKFRALMQL---KYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLG 1218
EK+ R+ + KYMR+ + PG AVG I +QS+GEP TQMTL TFHFAG AA TLG
Sbjct: 1021 TEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAG-VAAQTTLG 1079
Query: 1219 IPRMREIIMTASAAIKTPQLTMPIRDDVSDELADTFCKNITKVMLSEVIDKVQ 1271
+PR++EII A+ I TP +T + +D + A I K L +V ++
Sbjct: 1080 VPRIKEII-NAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLKDVTSYIE 1131
Score = 78.6 bits (192), Expect = 8e-14
Identities = 51/184 (27%), Positives = 93/184 (49%), Gaps = 3/184 (1%)
Query: 1468 AGDTEKLLMVNIVEDICRKSIIRQVPHIDRCVHPEPENGKRVLVTEGVNFQAMWDQDDFI 1527
+ +TE + + + ++ +P I+R V + E+GK L EG QA+ + + +
Sbjct: 1198 SSETEVYYRLQTYKRVLPDVVVAGIPTINRSVINQ-ESGKIELFMEGTGLQAVMNTEGIV 1256
Query: 1528 DINGIRSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYL 1587
+N V + G+EAAR +I++EI +++ ++V RH+ L+ D+MT +G L
Sbjct: 1257 GTK-TSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVL 1315
Query: 1588 AFNRQGMESSTSSLMKM-SYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFD 1646
R G+ S++ + S+E T L A + ++ S IV+GKL +GT F
Sbjct: 1316 GITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQ 1375
Query: 1647 LLSK 1650
L+ +
Sbjct: 1376 LIRR 1379
>CE04196 [K] KOG0261 RNA polymerase III large subunit
Length = 1388
Score = 390 bits (1001), Expect = e-107
Identities = 268/829 (32%), Positives = 413/829 (49%), Gaps = 63/829 (7%)
Query: 458 QALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVA 517
Q L+ K+G FR ++ GKRV+++ R+VISPDPN+ +++GVP A LT+PE V A N+
Sbjct: 339 QRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIE 398
Query: 518 ELRQAVINGPDKWPGATQIQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKV 577
++RQ VING D PGA + + L + +R LA L T +
Sbjct: 399 KMRQLVINGSDVHPGANYLVEKKTGNKKL--LKYGKRDELAKNLRMGDT----------I 446
Query: 578 YRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHF 637
RH+ + DVV+ NRQP+LHK S+M H+ +V+PG +T R + YNADFDGDEMN+H
Sbjct: 447 ERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPG-RTFRFNECACTPYNADFDGDEMNLHL 505
Query: 638 PQXXXXXXXXXXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIY 697
PQ + +TP SG P+ IQD I+ G LT KD+F R + ++
Sbjct: 506 PQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAA 565
Query: 698 GCIRPEDGHATRNKLVTIPP-AVMKPEPLWTGKQIITTVLLNTCPANMPGINLNSKNKIK 756
I D A + + IPP A+ +P LWTGKQ+I ++ +++ +NL +KNK
Sbjct: 566 ALI---DASAKKQTKIRIPPPAIRRPVELWTGKQLIELIIRPDKGSDV-SLNLTAKNKSY 621
Query: 757 NEYWGKSSEENNVVFKDGQLLCGILDKSQYGAS-KFGIVHSLHEVYGPDVAAKVLSVLGR 815
S+++ V+ ++ LL G LDKS G+S K I + L YG D A + L R
Sbjct: 622 TGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLAR 681
Query: 816 LFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGEL 875
+ +++ F+ G+ D+R + + + + + VD G ++ +K +
Sbjct: 682 MAPVFLSNRGFSIGIGDVRPSEQLLREKGQL----VDNGYSKCSQY------IKELEEGK 731
Query: 876 LKRLEEILRDDNKLGILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKG 935
LK ++ L++I ++++I C+ + + YN+ MA+ G+KG
Sbjct: 732 LKAQPGCTEEET----LESIILRELSTIRDHAGQVCLRNLSK----YNAPLTMAVCGSKG 783
Query: 936 SNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEY 995
S +N+SQ++ +GQQA+ G R P ++LP F+ + A G++ FYSG+ P E+
Sbjct: 784 SFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEF 843
Query: 996 YFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAV 1055
+FH M GREGL+DTAVKT+ +GY+QR L K LE + SYD +VR G +I+F++G D +
Sbjct: 844 FFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGL 903
Query: 1056 D----ITKESHMTEFKFCVDNYDALLKKYNPSALVDHLD-VESAXXXXXXXXXXXXXXXX 1110
D K+ + +F +++ + VD LD V A
Sbjct: 904 DPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHFADK 963
Query: 1111 XPHYAQTSKYDPVLSKFNPSKYLG-AVSENFQDKLEKFISTNDDFFKKDENVNE------ 1163
Y ++ N + G + + + K I N + +K N
Sbjct: 964 LSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLTKTQ 1023
Query: 1164 -KKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRM 1222
F L K R++ P GEPSTQMTL TFHFAG + N+T G+PR+
Sbjct: 1024 LCSFIELCYYKVARAITEP------------GEPSTQMTLKTFHFAGVASMNITQGVPRI 1071
Query: 1223 REIIMTASAAIKTPQLTMPIRDDVSDELADTFCKNITKVMLSEVIDKVQ 1271
+EII A I TP +T + D + LA I K L E+ D ++
Sbjct: 1072 KEII-NAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIE 1119
Score = 84.7 bits (208), Expect = 1e-15
Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 4/181 (2%)
Query: 1473 KLLMVNIVEDICRKSIIRQVPHIDRCV-HPEPENGKRV-LVTEGVNFQAMWDQDDFIDIN 1530
K + + I++ +++ +P ++RCV H + + G L+ EG +F+++ +D
Sbjct: 1188 KTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVG-VDPR 1246
Query: 1531 GIRSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFN 1590
N+ V G+EAAR+ I+NEI + I + RH+ L+AD+MT +G L
Sbjct: 1247 KTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGIT 1306
Query: 1591 RQGM-ESSTSSLMKMSYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLLS 1649
R G+ + S L+ S+E T L +A ++ + + S I+MG VGTG+F L+
Sbjct: 1307 RNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQ 1366
Query: 1650 K 1650
K
Sbjct: 1367 K 1367
>7292659 [K] KOG0260 RNA polymerase II large subunit
Length = 1887
Score = 364 bits (934), Expect = e-100
Identities = 231/725 (31%), Positives = 361/725 (48%), Gaps = 86/725 (11%)
Query: 398 DLNDEMSRLQKDKVSADDRKVIFNRL----MNAFVTIQNDVNAFIDSTKAQSSSGNKVPI 453
D+ + L+K++ S VI + + + ND+ +A SG P+
Sbjct: 274 DIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGM---PRAMQKSGK--PL 328
Query: 454 PGLKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTA 513
+K L+ KEG R ++MGKRV+++AR+VI+PDPN+ +++GVP A LT+PE VT
Sbjct: 329 KAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTP 388
Query: 514 YNVAELRQAVINGPDKWPGATQIQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSI 573
+N+ +++ V G ++PGA I ++G + L P + D+
Sbjct: 389 FNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL--------------RFHPKSSDLHLQC 434
Query: 574 NKKVYRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEM 633
KV RH+++ D+VI NRQPTLHK SMMGH+V+VLP T R++ + T YNADFDGDEM
Sbjct: 435 GYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS-TFRMNLSCTSPYNADFDGDEM 493
Query: 634 NMHFPQXXXXXXXXXXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQ 693
N+H PQ T Q +TP + PV G++QD ++A +T +D F TREQ
Sbjct: 494 NLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVM 553
Query: 694 QYIYGCIRPEDGHATRNKLVTIP--------PAVMKPEPLWTGKQIITTVLLNTCPANMP 745
N L+ +P P ++KP PLWTGKQI + ++ P N+
Sbjct: 554 ----------------NLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLII----PGNVN 593
Query: 746 GINLNSKNKIKNE---YWGKSSEENNVVFKDGQLLCGILDKSQYGASKFGIVHSLHEVYG 802
I +S + + + Y S + V+ + G+L+ GIL K G S ++H G
Sbjct: 594 MIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELG 653
Query: 803 PDVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVT 862
D+A + + + N++ + G+ D T + N+I Q
Sbjct: 654 HDIAGRFYGNIQTVINNWLLFEGHSIGIGD---TIADPQTYNEIQQAI------------ 698
Query: 863 NLDKDVKSDDGELLKRLEEILRDDNKLGILDAITSSKVNSITSQVVSKCVPDGTMKKFPY 922
K K D ++++ + + L +KVN I + K Y
Sbjct: 699 ---KKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEY 755
Query: 923 NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYI 982
N+++AM +SG+KGSN+N+SQ++ +GQQ +EG+R+P +TLP F + + G++
Sbjct: 756 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFV 815
Query: 983 KGRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGD 1042
+ + +G+ P E+YFH M GREGLIDTAVKT+ +GY+QR L K +E V ++YD +VR+
Sbjct: 816 ENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875
Query: 1043 GTLIQFLYGGD-------------AVDITKESHMTEFKFCVDNYDALLKKYNPSALVDHL 1089
G LIQ YG D V ++ +S FKF N + K + + +
Sbjct: 876 GQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMT 935
Query: 1090 DVESA 1094
D A
Sbjct: 936 DSSEA 940
Score = 95.9 bits (237), Expect = 5e-19
Identities = 57/166 (34%), Positives = 93/166 (55%), Gaps = 15/166 (9%)
Query: 1501 PEPENGKRVLVTEGVNFQAM--W----DQDDFI------DINGIR--SNDVAAVLKTYGV 1546
P+ ++ KR+++TE F+A+ W D + D++ IR SND+ + + G+
Sbjct: 1304 PQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGI 1363
Query: 1547 EAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGM-ESSTSSLMKMS 1605
EA R ++ E+N V Y + V++RHL L+ D+MT +G+ +A R G+ T +LM+ S
Sbjct: 1364 EAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1423
Query: 1606 YETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLLSKA 1651
+E T L A E + ++ S I+MG+L +GTG FDLL A
Sbjct: 1424 FEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDA 1469
Score = 82.0 bits (201), Expect = 7e-15
Identities = 39/71 (54%), Positives = 54/71 (75%), Gaps = 1/71 (1%)
Query: 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTA 1229
++ ++ ++ NPGE VG +A+QS+GEP+TQMTLNTFHFAG + NVTLG+PR++EII
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEII-NI 1122
Query: 1230 SAAIKTPQLTM 1240
S K P LT+
Sbjct: 1123 SKKPKAPSLTV 1133
Score = 55.5 bits (132), Expect = 7e-07
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 4 SKPVGAEITSIDFSVLTSDEIRKLSAKQ--VTNPTVLDNLGHPIQGGLYDLALGAFLK-N 60
SK ++ + F +L+ DEIR++S + V ++ G P GGL D G + +
Sbjct: 7 SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEG-GRPKLGGLMDPRQGVIDRTS 65
Query: 61 LCATCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFC 105
C TC + CPGH GHI+L P ++ F + LR C +C
Sbjct: 66 RCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYC 110
>SPBC28F2.12 [K] KOG0260 RNA polymerase II large subunit
Length = 1752
Score = 360 bits (923), Expect = 1e-98
Identities = 215/639 (33%), Positives = 337/639 (52%), Gaps = 54/639 (8%)
Query: 420 FNRLMNAFVTIQNDVNAFIDSTKAQSSSGNKVPIPGLKQALEKKEGLFRKHMMGKRVNYA 479
+ +L+ V D N +A SG P+ ++ L+ KEG R ++MGKRV+++
Sbjct: 298 YEQLLQFHVATYMD-NEIAGQPQALQKSGR--PLKSIRARLKGKEGRLRGNLMGKRVDFS 354
Query: 480 ARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQIQNE 539
AR+VI+ DPN+ +E+GVP A LTYPE VT YN+ +L++ V NGPD+ PGA I +
Sbjct: 355 ARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRD 414
Query: 540 DGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKNRDVVIMNRQPTLHKAS 599
G + L +R D+ +V RHI++ DVVI NRQP+LHK S
Sbjct: 415 TGERIDL---RYHKRAG-----------DIPLRYGWRVERHIRDGDVVIFNRQPSLHKMS 460
Query: 600 MMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXXXXXXXTDSQYLT 659
MMGH++RV+P T RL+ + T YNADFDGDEMNMH PQ Q ++
Sbjct: 461 MMGHRIRVMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVS 519
Query: 660 PTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHATRNKLVTIPPAV 719
P S PV G++QD ++ + +D+F TR + + DG + PP +
Sbjct: 520 PQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLW-VPDWDG-------ILPPPVI 571
Query: 720 MKPEPLWTGKQIITTVLLNTCPANMPGINLNSKNKIKNEYWGKSSEENNVVFKDGQLLCG 779
+KP+ LWTGKQI++ ++ P + I + K + N ++ ++ ++G+++ G
Sbjct: 572 LKPKVLWTGKQILSLII----PKGINLIRDDDKQSLSNP------TDSGMLIENGEIIYG 621
Query: 780 ILDKSQYGASKFGIVHSLHEVYGPDVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEG 839
++DK GAS+ G+VH++ + GP++ + + R+ ++ F+ G+ D A+
Sbjct: 622 VVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADT 681
Query: 840 NKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGELLKRLEEILRDDNKLGILDAITSSK 899
K EVT K+ + E ++ + L +K
Sbjct: 682 MK------------------EVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAK 723
Query: 900 VNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPV 959
V+ I +Q N+++ M +G+KGS +N+SQ+ +GQQ +EG+R+P
Sbjct: 724 VSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPF 783
Query: 960 MVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYL 1019
+TLP F + + G+I+ + G+ PQE++FH MAGREGLIDTAVKT+ +GY+
Sbjct: 784 GFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 843
Query: 1020 QRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAVDIT 1058
QR L K +E V + YD +VR+ G +IQF YG D +D T
Sbjct: 844 QRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDAT 882
Score = 90.1 bits (222), Expect = 3e-17
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Query: 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTA 1229
++ ++ +++++PGE VG +A+QS+GEP+TQMTLNTFH+AG + NVTLG+PR++EI+ A
Sbjct: 1052 VEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVA 1111
Query: 1230 SAAIKTPQLTMPIRDDVSD--ELADTFCKNITKVMLSEVIDKVQVTETIGAQDSSTSSRS 1287
IKTP LT+ + ++ +LA I LS V ++ QD+
Sbjct: 1112 K-NIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDK 1170
Query: 1288 YIINVRFFDSEEYLEE 1303
+ F +E +EE
Sbjct: 1171 DFVEAFFAIPDEEVEE 1186
Score = 88.2 bits (217), Expect = 1e-16
Identities = 47/140 (33%), Positives = 79/140 (55%), Gaps = 2/140 (1%)
Query: 1509 VLVTEGVNFQAMWDQDDFIDINGIRSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISV 1568
VL T+G+N + +D SN +L+ G+EA R+ ++ E+ NV V
Sbjct: 1311 VLETDGINLTEAMTVEG-VDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYV 1369
Query: 1569 SFRHLDLIADMMTRQGNYLAFNRQGM-ESSTSSLMKMSYETTCQFLTKAVLDNEHEELKS 1627
++RHL L+ D+MT +G+ +A R G+ + T +LM+ S+E T + L A E ++ K
Sbjct: 1370 NYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKG 1429
Query: 1628 PSAKIVMGKLNGVGTGSFDL 1647
S I++G+L +GTG+FD+
Sbjct: 1430 ISENIMLGQLAPMGTGAFDI 1449
Score = 65.5 bits (158), Expect = 7e-10
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 11 ITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGH-PIQGGLYDLALGAFLKNL-CATCGLD 68
+ + F +L+ +EIR +S ++ P +D G P GGL D LG + C TCG
Sbjct: 16 VEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDRQFKCQTCGET 75
Query: 69 EKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSS 113
CPGH GHIEL P ++ F +++ L C C ++ SS
Sbjct: 76 MADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSS 120
>ECU07g0090 [K] KOG0261 RNA polymerase III large subunit
Length = 1349
Score = 360 bits (923), Expect = 1e-98
Identities = 270/903 (29%), Positives = 431/903 (46%), Gaps = 88/903 (9%)
Query: 452 PIPGLKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPV 511
P+ G+ Q L+ K G FR ++ GKRV+++ R+VISPDPN+ E+G+P A LT E V
Sbjct: 346 PVRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVISPDPNLSIEEVGIPERMAKILTISERV 405
Query: 512 TAYNVAELRQAVINGPDKWPGATQIQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAH 571
T N +L+ V+NGP+ +PGA + E + L D+
Sbjct: 406 TRLNRRKLQALVLNGPENYPGANYVVGEK-----------------FKRFLMYGKRDIEL 448
Query: 572 SINKKVYRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGD 631
+ V RH+ + D+V+ NRQP+LH+ S+M HKVRV KTLR + YNADFDGD
Sbjct: 449 KYGEVVERHLMDGDMVLFNRQPSLHRMSIMSHKVRV-HRNKTLRFNECVCTPYNADFDGD 507
Query: 632 EMNMHFPQXXXXXXXXXXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQ 691
EMN+H PQ + +TP G P+ QD I+ +T KD+FF RE+
Sbjct: 508 EMNVHVPQTEKARAEASVLMSVSNNIVTPRHGEPIVAATQDFITGLYLITGKDTFFDRER 567
Query: 692 YQQYIYGCIRPEDGHATRNKLVTIPPAVMKPEPLWTGKQIITTVLLNTCPANMP------ 745
+ Q + V + PA+ KP L+TGKQ+I ++ ++ A++
Sbjct: 568 FGQLV---------SYFSEARVGVKPAIRKPVELFTGKQLIEVLIKDSFTASIERNAVTG 618
Query: 746 --GINLNSKNKIKNEYWGKSSEENNVVFKDGQLLCGILDKSQYGA--SKFGIVHSLHEVY 801
++L KN+ + + +V D G LDKS G + +++++ +V
Sbjct: 619 NMAVSLVGKNRSFKTH--DDPNDGSVAILDNSYYFGRLDKSIVGGENKRDSLIYAIMKV- 675
Query: 802 GPDVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSVD-IGRVAAAE 860
A + ++ + +L + Y+ T F+ G+DD++ IL+ + + R AE
Sbjct: 676 SSMAAVRAMNSITKLCSRYLGETGFSIGLDDVQ--------PGPILRQKKEMVVRRGYAE 727
Query: 861 VTNLDKDVKSDDGELLKRLEEILRDDNKLGILDAITSSKVNSITSQVVSKCVPDGTMKKF 920
+ K LE + + +L+ SS +N I + S C+ + ++
Sbjct: 728 CES-------------KILEYSKKPEANEEMLEMEISSILNRIREECGSICIKELGIRNS 774
Query: 921 PYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGG 980
P N MQA G+KGS +NVSQ++ +GQQ + G R+P + + LP FK + G
Sbjct: 775 P-NIMQA---CGSKGSKINVSQMVACVGQQIVSGTRIPNGMDERCLPHFKRGSRTPESKG 830
Query: 981 YIKGRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRD 1040
++ F+ G+ E++FH ++GREGL+DTAVKT+ +GY+QR L K LE + I YD SVR+
Sbjct: 831 FVLNSFFDGLTSPEFFFHAVSGREGLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVRN 890
Query: 1041 GDGTLIQFLYGGDAVDITKESHMTEFKFCVDNYDALLKKYNPSALVDHLDVESAXXXXXX 1100
+ ++QF YG D +D M+E + N + + + S L H S
Sbjct: 891 SNMEVVQFAYGEDQID----PAMSEGDESI-NLEQVFLRAKSSFL--HSLGPSPDLYSSW 943
Query: 1101 XXXXXXXXXXXPHYAQTSKYDPVLSKFNPSKYLGAVSENFQDKLEKFISTNDDFFKKDEN 1160
+ ++ + ++ L + +DK F T +F +
Sbjct: 944 LDEHGTIDILRRLTPKGYPFEHIANRRFVGSLLRFMESKHEDKF-CFGGTFYRYFLSKDF 1002
Query: 1161 VNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIP 1220
+ + F +++ K M ++ PG VG IA QS+GEP TQMTL TFHFAG + N+TLG+P
Sbjct: 1003 I--ETFFSMVSQKMMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVP 1060
Query: 1221 RMREIIMTASAAIKTPQLTMPI-------RDDVSDELADTFCKNITKVMLSEVIDKVQVT 1273
R++EII A I TP + + R +V D L+EVI K ++
Sbjct: 1061 RLKEII-NAVCNISTPIINAELDDPHDLFRTEVIKGRLDRISLKDVCSSLTEVISKDEIF 1119
Query: 1274 ETIGAQDSSTSSRSYIINVRFFDSEEYLEEYDVTKEELESVIAGKFIKTLEAAI--VKEI 1331
I S S +N+ E+ L +D + E+ + K + + ++ I
Sbjct: 1120 LDIRVDLESLSRLK--LNLDIHKIEKLLNNHDQVRVVNENTLRVSIKKITDQSYFNLQRI 1177
Query: 1332 KKQ 1334
KK+
Sbjct: 1178 KKK 1180
Score = 77.4 bits (189), Expect = 2e-13
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 6/127 (4%)
Query: 1527 IDINGIR-----SNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMT 1581
I+I+G++ SN + V + G+EAAR I++EI S + I + RH+ L+AD MT
Sbjct: 1217 INIDGVKAINTTSNSITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMT 1276
Query: 1582 RQGNYLAFNRQGM-ESSTSSLMKMSYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGV 1640
+G R G+ + S S+LM S+E T +L +A + ++ +E+ S I++G +
Sbjct: 1277 YRGEVFGITRFGISKMSRSTLMLASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICI 1336
Query: 1641 GTGSFDL 1647
GTGS DL
Sbjct: 1337 GTGSMDL 1343
Score = 52.4 bits (124), Expect = 6e-06
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 7 VGAEITSIDFSVLTSDEIRKLSAKQVTNPTVLD-NLGHPIQGGLYDLALGAF-LKNLCAT 64
+ I I FS+L+ EI LS ++++ + D + P+ G DL LG K+ CAT
Sbjct: 43 IDIRIRRISFSLLSPQEISDLSVHEISSKDLYDISTRAPLPNGPLDLRLGVGNKKDKCAT 102
Query: 65 CGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVHLYACKLR 123
CG C GH G + L +P +N L C C L + + KLR
Sbjct: 103 CGEGLATCIGHFGEVRLVLPVFNVGLIKNTISTLNCLCKSCGSILLNEKKKIYFKKKLR 161
>At5g60040 [K] KOG0261 RNA polymerase III large subunit
Length = 1328
Score = 358 bits (920), Expect = 3e-98
Identities = 273/878 (31%), Positives = 422/878 (47%), Gaps = 139/878 (15%)
Query: 424 MNAFVTIQNDVNAFIDS-TKAQSSSGNKVPIPGLKQALEKKEGLFRKHMMGKRVNYAARS 482
M + T+Q +V +I+S + + + P+ G+ Q L+ K G FR ++ GKRV + R+
Sbjct: 309 MQVWDTVQIEVARYINSEVRGCQNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRT 368
Query: 483 VISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQIQNEDGS 542
VISPDPN++ E+G+P + A LT+PE V+ +N+ +LRQ V NGP+K+PGA ++ DGS
Sbjct: 369 VISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGS 428
Query: 543 FVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKNRDVVIMNRQPTLHKASMMG 602
+LVG + RK +A++L +I V RH++ DVV+ NRQP+LH+ S+M
Sbjct: 429 SRTLVG---DYRKRIADEL----------AIGCIVDRHLQEGDVVLFNRQPSLHRMSIMC 475
Query: 603 HKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXXXXXXXTDSQYLTPTS 662
H+ R++P +TLR + + YNADFDGDEMNMH PQ T
Sbjct: 476 HRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR----------------TE 518
Query: 663 GSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHATRNKLVTIP-PAVMK 721
+ G D+F+ R + C DG + + +P P ++K
Sbjct: 519 AITLMG---------------DTFYDRAAFSLI---CSYMGDGMDS----IDLPTPTILK 556
Query: 722 PEPLWTGKQIITTVLL-NTCPANMPGINLNSKNKIKNEYWGKSS---EENNVVFKDGQLL 777
P LWTGKQI + +L N +N+ KN K E+ + + V F++ +L+
Sbjct: 557 PIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELI 616
Query: 778 CGILDKSQY--------GASKFGIVHSLHEVYGPDVAAKVLSVLGRLFTNYITATAFTCG 829
G L K+ +K G+ L Y AA ++ L +L +I F+ G
Sbjct: 617 SGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIG 676
Query: 830 MDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSD-DGELLKRLEEILRDDNK 888
+DD++ E +K R D +Q D E + +K+ DG K LE +
Sbjct: 677 IDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDG--AKSLEAEI----- 729
Query: 889 LGILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLG 948
GIL+ I + + S + + NS M+ G+KGS +N+SQ++ +G
Sbjct: 730 TGILNTIREATGKACMSGLHWR------------NSPLIMSQCGSKGSPINISQMVACVG 777
Query: 949 QQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGLID 1008
QQ + G R P ++LP F A G++ FYSG+ E++FH M GREGL+D
Sbjct: 778 QQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVD 837
Query: 1009 TAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAVDITKESHMTEFKF 1068
TAVKT+ +GY+ R L K LE + + YDN+VR+ G ++QF YG D +D + M
Sbjct: 838 TAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD---PALMEGKDG 894
Query: 1069 CVDNYDALLKKYN----PSALVDHLDVESAXXXXXXXXXXXXXXXXXPHYAQTSKYDPVL 1124
N++ L K P + +L E + K++ L
Sbjct: 895 APLNFNRLFLKVQATCPPRSHHTYLSSEEL----------------------SQKFEEEL 932
Query: 1125 SKFNPSKYLGAVSENFQDKLEKFIS-------TNDDFFKKDENVNEKKFRALMQLKYMRS 1177
+ + S+ ++ F L +F+S + K V +K+ A
Sbjct: 933 VRHDKSR---VCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEA--------- 980
Query: 1178 LINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQ 1237
G A+G I +QS+GEP TQMTL TFHFAG + N+T G+PR+ EII AS I TP
Sbjct: 981 ----GTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEII-NASKNISTPV 1035
Query: 1238 LTMPIRDDVSDELADTFCKNITKVMLSEVIDKVQVTET 1275
++ + + + A I K L +V + ++V T
Sbjct: 1036 ISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMT 1073
Score = 80.1 bits (196), Expect = 3e-14
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 1510 LVTEGVNFQAMWDQDDFIDING--IRSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAIS 1567
L EG N A+ ING SN+V V KT G+EAAR TI++EI V + +S
Sbjct: 1172 LFVEGTNLLAVMGTPG---INGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMS 1228
Query: 1568 VSFRHLDLIADMMTRQGNYLAFNRQGMESSTSS-LMKMSYETTCQFLTKAVLDNEHEELK 1626
+ RH+ L+AD+MT +G L R G++ S LM+ S+E T L A + + ++
Sbjct: 1229 IDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIE 1288
Query: 1627 SPSAKIVMGKLNGVGTGSFDLLSK 1650
+ ++MG +GTG +L +
Sbjct: 1289 GVTECVIMGIPMKLGTGILKVLQR 1312
Score = 67.0 bits (162), Expect = 2e-10
Identities = 41/111 (36%), Positives = 62/111 (54%), Gaps = 3/111 (2%)
Query: 10 EITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGA-FLKNLCATCGLD 68
+I SI+FSVL+ E+ K + QV N + D+ P + GL D +G K++C TC +
Sbjct: 22 KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81
Query: 69 EKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRL--KSSEVHL 117
+ CPGH G+++L +P YN +FN + L+ C C + L K E HL
Sbjct: 82 FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLYEDHL 132
>At4g35800 [K] KOG0260 RNA polymerase II large subunit
Length = 1840
Score = 348 bits (893), Expect = 4e-95
Identities = 249/819 (30%), Positives = 387/819 (46%), Gaps = 95/819 (11%)
Query: 291 RDEDGEFGTARSPVNLKPKTGSTYILSTEVRNILRAVFRSEQEVLQYVFFSRPNHNKKIV 350
R ++ E P K G+ +LS +L+ + ++ ++L + N K
Sbjct: 195 RKKNDEPDQLPEPAERKQTLGADRVLS-----VLKRISDADCQLLGF--------NPKFA 241
Query: 351 TADMFFMEVLIVPPTRFRLPSKLGDEVHENTQNQXXXXXXXXXXXXRDLNDEMSRLQKDK 410
D +EVL +PP R PS + D + + N+ + R +K+
Sbjct: 242 RPDWMILEVLPIPPPPVR-PSVMMDATSRSEDDLTHQLAMIIRH-----NENLKRQEKNG 295
Query: 411 VSADDRKVIFNRLMNAFVTIQNDVNAFIDSTKAQSSSGNKVPIPGLKQALEKKEGLFRKH 470
A F +L+ + D N +A SG PI + L+ KEG R +
Sbjct: 296 APAHIISE-FTQLLQFHIATYFD-NELPGQPRATQKSGR--PIKSICSRLKAKEGRIRGN 351
Query: 471 MMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKW 530
+MGKRV+++AR+VI+PDP I +E+GVP A LTYPE VT YN+ L++ V GP
Sbjct: 352 LMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPP 411
Query: 531 PGAT---QIQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKNRDVV 587
PG T I +DG + L K ++Q L + KV RH+++ D V
Sbjct: 412 PGKTGAKYIIRDDGQ-----RLDLRYLKKSSDQHL---------ELGYKVERHLQDGDFV 457
Query: 588 IMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXX 647
+ NRQP+LHK S+MGH++R++P T RL+ + T YNADFDGDEMNMH PQ
Sbjct: 458 LFNRQPSLHKMSIMGHRIRIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 516
Query: 648 XXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHA 707
++P + PV G++QD + +T +D+F ++ + + DG
Sbjct: 517 LELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWW-EDFDGKV 575
Query: 708 TRNKLVTIPPAVMKPEPLWTGKQIITTVLLNTCPANMPGINLNSKNKIKNEYWGKSSE-- 765
PA++KP PLWTGKQ+ ++ P + N ++ W +E
Sbjct: 576 PA-------PAILKPRPLWTGKQVFNLII----PKQI--------NLLRYSAWHADTETG 616
Query: 766 -----ENNVVFKDGQLLCGILDKSQYGASKFGIVHSLHEVYGPDVAAKVLSVLGRLFTNY 820
+ V + G+LL G L K G S +VH + E GPD A K L L +
Sbjct: 617 FITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYW 676
Query: 821 ITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGELLKRLE 880
+ FT G+ D T + I +T ++N VK +L+++ +
Sbjct: 677 LLQNGFTIGIGD---TIADSSTMEKINET-----------ISNAKTAVK----DLIRQFQ 718
Query: 881 EILRDDNKLGILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGSNVNV 940
D + ++VN + ++ N+++AM +G+KGS +N+
Sbjct: 719 GKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINI 778
Query: 941 SQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYYFHCM 1000
SQ+ +GQQ +EG+R+P G+TLP F + + G+++ + G+ PQE++FH M
Sbjct: 779 SQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 838
Query: 1001 AGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAVDIT-- 1058
GREGLIDTAVKTS +GY+QR L K +E + + YD +VR+ G +IQFLYG D +D
Sbjct: 839 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 898
Query: 1059 KESHMTEFKFCVDNYDALLK------KYNPSALVD-HLD 1090
+ + K +D K +NP+ L D HL+
Sbjct: 899 ESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLE 937
Score = 91.7 bits (226), Expect = 9e-18
Identities = 68/229 (29%), Positives = 115/229 (49%), Gaps = 27/229 (11%)
Query: 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTA 1229
++ ++++SL+ PGE +G +A+QS+GEP+TQMTLNTFH+AG A NVTLG+PR+REII A
Sbjct: 1070 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1129
Query: 1230 SAAIKTPQLTMPIRDDV--SDELADTFCKNITKVMLSEVIDKVQVTETIGAQDSSTSSRS 1287
IKTP L++ + + S E A T + L V +V D S
Sbjct: 1130 K-RIKTPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVW-----YDPDPMSTI 1183
Query: 1288 YIINVRFFDSEEYLEEYDVTKEELESVIAGKFIKTLEAAIVKEIKKQKKTSLPDVGIALP 1347
+ F S + + DV+ +++ + L + +E+ KK S+ D+
Sbjct: 1184 IEEDFEFVRSYYEMPDEDVSPDKISPWL-------LRIELNREMMVDKKLSMADIA---- 1232
Query: 1348 KSQTAMGADERITNVEEDNDEEQ-------MRKKSKESVSYDDPDEDEV 1389
+ + D+ +T + D++ ++ M + + D+ ED+V
Sbjct: 1233 -EKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDESAEDDV 1280
Score = 81.6 bits (200), Expect = 9e-15
Identities = 59/218 (27%), Positives = 109/218 (49%), Gaps = 16/218 (7%)
Query: 1443 SSTRFVTKYNFDDDEGKWCEFKLELAGDTEKLLMVNIVEDICRKSIIRQVPHIDRCVHPE 1502
++ + + + +DEG E + E A D + + I ++ + +R +P I++ +
Sbjct: 1251 NAQKLILRIRIMNDEGPKGELQDESAEDD--VFLKKIESNMLTEMALRGIPDINKVFIKQ 1308
Query: 1503 -------PENGKR-----VLVTEGVNFQAMWDQDDFIDINGIRSNDVAAVLKTYGVEAAR 1550
E G + +L TEGVN A+ +D +D SN + +++ G+EA R
Sbjct: 1309 VRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHED-VDPKRTTSNHLIEIIEVLGIEAVR 1367
Query: 1551 NTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGM-ESSTSSLMKMSYETT 1609
+++E+ V S V++RHL ++ D MT +G+ +A R G+ + T LM+ S+E T
Sbjct: 1368 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEET 1427
Query: 1610 CQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDL 1647
L A E + L+ + I++G+L +GTG +L
Sbjct: 1428 VDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCEL 1465
Score = 58.5 bits (140), Expect = 8e-08
Identities = 32/98 (32%), Positives = 50/98 (50%), Gaps = 2/98 (2%)
Query: 9 AEITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAFLKNL-CATCGL 67
+++ + F +L+ DEIR++S V + + G P GGL D LG + + C TC
Sbjct: 13 SKVRVVQFGILSPDEIRQMSVIHVEHSETTEK-GKPKVGGLSDTRLGTIDRKVKCETCMA 71
Query: 68 DEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFC 105
+ CPGH G++EL P Y+ F + +R C C
Sbjct: 72 NMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNC 109
>YDL140c [K] KOG0260 RNA polymerase II large subunit
Length = 1733
Score = 347 bits (889), Expect = 1e-94
Identities = 209/622 (33%), Positives = 336/622 (53%), Gaps = 53/622 (8%)
Query: 435 NAFIDSTKAQSSSGNKVPIPGLKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNE 494
N +A SG P+ ++ L+ KEG R ++MGKRV+++AR+VIS DPN+E ++
Sbjct: 306 NDIAGQPQALQKSGR--PVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQ 363
Query: 495 IGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQIQNEDGSFVSLVGMTLEQR 554
+GVP A LTYPE VT YN+ L Q V NGP++ PGA + + G + L
Sbjct: 364 VGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDL-------- 415
Query: 555 KALANQLLTPSTHDVAHSINKKVYRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGEKTL 614
+ D+ KV RHI + D V+ NRQP+LHK SMM H+V+V+P T
Sbjct: 416 ------RYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIP-YSTF 468
Query: 615 RLHYANTGAYNADFDGDEMNMHFPQXXXXXXXXXXXXXTDSQYLTPTSGSPVRGLIQDHI 674
RL+ + T YNADFDGDEMN+H PQ Q ++P S P G++QD +
Sbjct: 469 RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTL 528
Query: 675 SAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHATRNKLVTIPPAVMKPEPLWTGKQIITT 734
LT +D+F +Q +Y + DG V PA++KP+PLW+GKQI++
Sbjct: 529 CGIRKLTLRDTFIELDQVLNMLYW-VPDWDG-------VIPTPAIIKPKPLWSGKQILSV 580
Query: 735 VLLNTCPANMPGINLNSKNKIKNEYWGKSSEENNVVFKDGQLLCGILDKSQYGASKFGIV 794
+ N GI+L ++ S ++N ++ DGQ++ G+++K G+S G++
Sbjct: 581 AIPN-------GIHLQRFDEGTTLL---SPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 630
Query: 795 HSLHEVYGPDVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIG 854
H + GP V AK+ + ++ ++ F+ G+ D A+G R +I +T
Sbjct: 631 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDT--IADGPTMR-EITET----- 682
Query: 855 RVAAAEVTNLDKDVKSDDGELLKRLEEILRDDNKLGILDAITSSKVNSITSQVVSKCVPD 914
+A A+ LD ++ L + LR+ + ++ + ++ + ++ + D
Sbjct: 683 -IAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKA--GRLAEVNLKD 739
Query: 915 GTMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFET 974
N+++ M ++G+KGS +N++Q+ +GQQ++EG+R+ +TLP F +
Sbjct: 740 -------LNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDY 792
Query: 975 DARAGGYIKGRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISY 1034
+ G+++ + G+ PQE++FH M GREGLIDTAVKT+ +GY+QR L K LE + + Y
Sbjct: 793 SPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHY 852
Query: 1035 DNSVRDGDGTLIQFLYGGDAVD 1056
DN+ R+ G +IQF+YG D +D
Sbjct: 853 DNTTRNSLGNVIQFIYGEDGMD 874
Score = 85.9 bits (211), Expect = 5e-16
Identities = 38/71 (53%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTA 1229
++ +++RS+++PGE VG++A+QS+GEP+TQMTLNTFHFAG + VT G+PR++EI+ A
Sbjct: 1049 IEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA 1108
Query: 1230 SAAIKTPQLTM 1240
+KTP LT+
Sbjct: 1109 K-NMKTPSLTV 1118
Score = 84.7 bits (208), Expect = 1e-15
Identities = 53/173 (30%), Positives = 90/173 (51%), Gaps = 5/173 (2%)
Query: 1477 VNIVEDICRKSIIRQVPHIDRCVHPEPENGKRVLVTEGVNFQAMWDQDDFIDINGIRSND 1536
V +E + R+VP EPE VL T+GVN + ID I +N
Sbjct: 1276 VENIERVVMMKYDRKVPSPTGEYVKEPE---WVLETDGVNLSEVMTVPG-IDPTRIYTNS 1331
Query: 1537 VAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGM-E 1595
+++ G+EA R + E+ NV + V++RH+ L+ D+MT QG + R G
Sbjct: 1332 FIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNR 1391
Query: 1596 SSTSSLMKMSYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLL 1648
S+T +LM+ S+E T + L +A E ++ + S +++G++ +GTG+FD++
Sbjct: 1392 SNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVM 1444
Score = 53.9 bits (128), Expect = 2e-06
Identities = 29/97 (29%), Positives = 48/97 (48%), Gaps = 2/97 (2%)
Query: 11 ITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQ-GGLYDLALGAFLKNL-CATCGLD 68
+ + F + + +E+R +S ++ P +D + GGL D LG+ +NL C TC
Sbjct: 14 VKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEG 73
Query: 69 EKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFC 105
CPGH GHI+L P ++ F ++ C+ C
Sbjct: 74 MNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHC 110
>Hs4505939 [K] KOG0260 RNA polymerase II large subunit
Length = 1970
Score = 346 bits (887), Expect = 2e-94
Identities = 207/617 (33%), Positives = 321/617 (51%), Gaps = 50/617 (8%)
Query: 442 KAQSSSGNKVPIPGLKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVF 501
+A SG P+ LKQ L+ KEG R ++MGKRV+++AR+VI+PDPN+ +++GVP
Sbjct: 327 RAMQKSGR--PLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSI 384
Query: 502 ATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQIQNEDGSFVSLVGMTLEQRKALANQL 561
A +T+ E VT +N+ L++ V G ++PGA I ++G + L
Sbjct: 385 AANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDL--------------R 430
Query: 562 LTPSTHDVAHSINKKVYRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANT 621
P D+ KV RH+ + D+VI NRQPTLHK SMMGH+VR+LP T RL+ + T
Sbjct: 431 FHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS-TFRLNLSVT 489
Query: 622 GAYNADFDGDEMNMHFPQXXXXXXXXXXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLT 681
YNADFDGDEMN+H PQ +TP S PV G++QD ++A T
Sbjct: 490 TPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFT 549
Query: 682 SKDSFFTREQYQQYIYGCIRPEDGHATRNKLVTIPPAVMKPEPLWTGKQIITTVLLNTCP 741
+D F R + + + DG + PA++KP PLWTGKQI + ++ P
Sbjct: 550 KRDVFLERGEVMNLLM-FLSTWDGKVPQ-------PAILKPRPLWTGKQIFSLII----P 597
Query: 742 ANMPGINLNSKNKIKNE---YWGKSSEENNVVFKDGQLLCGILDKSQYGASKFGIVHSLH 798
++ I +S + + Y S + VV ++G+L+ GIL K G S +VH +
Sbjct: 598 GHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISY 657
Query: 799 EVYGPDVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAA 858
G D+ S + + N++ T G+ D A+ ++
Sbjct: 658 LEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDS--IADSKTYQ--------------- 700
Query: 859 AEVTNLDKDVKSDDGELLKRLEEILRDDNKLGILDAITSSKVNSITSQVVSKCVPDGTMK 918
++ N K K D E++++ + L ++VN I + K
Sbjct: 701 -DIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKS 759
Query: 919 KFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARA 978
YN+ ++M +SGAKGS +N+SQ++ ++GQQ +EG+R+P +TLP F + +
Sbjct: 760 LSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPES 819
Query: 979 GGYIKGRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSV 1038
G+++ + +G+ P E++FH M GREGLIDTAVKT+ +GY+QR L K +E V + YD +V
Sbjct: 820 RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATV 879
Query: 1039 RDGDGTLIQFLYGGDAV 1055
R+ ++Q YG D +
Sbjct: 880 RNSINQVVQLRYGEDGL 896
Score = 91.3 bits (225), Expect = 1e-17
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 15/166 (9%)
Query: 1501 PEPENGKRVLVTEGVNFQAMWD---QDDFI---------DINGIR--SNDVAAVLKTYGV 1546
P+ +N K++++TE F+A+ + + D + D++ +R SND+ + G+
Sbjct: 1312 PQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGI 1371
Query: 1547 EAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGM-ESSTSSLMKMS 1605
EA R + E+ +V S V++RHL L+ D MT +G+ +A R G+ T LMK S
Sbjct: 1372 EAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCS 1431
Query: 1606 YETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLLSKA 1651
+E T L +A E + +K S I++G+L GTG FDLL A
Sbjct: 1432 FEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDA 1477
Score = 82.8 bits (203), Expect = 4e-15
Identities = 39/71 (54%), Positives = 56/71 (77%), Gaps = 1/71 (1%)
Query: 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTA 1229
++ K+ +++ +PGE VG +A+QS+GEP+TQMTLNTFH+AG A NVTLG+PR++E+I
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELI-NI 1130
Query: 1230 SAAIKTPQLTM 1240
S KTP LT+
Sbjct: 1131 SKKPKTPSLTV 1141
Score = 57.0 bits (136), Expect = 2e-07
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 11 ITSIDFSVLTSDEIRKLSAKQ--VTNPTVLDNLGHPIQGGLYDLALGAFLKN-LCATCGL 67
I + F VL+ DE++++S + + P + G P GGL D G + C TC
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEG-GRPKLGGLMDPRQGVIERTGRCQTCAG 76
Query: 68 DEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSS 113
+ CPGH GHIEL P ++ F + LR C FC + S+
Sbjct: 77 NMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSN 122
>ECU03g0290 [K] KOG0260 RNA polymerase II large subunit
Length = 1599
Score = 339 bits (870), Expect = 2e-92
Identities = 218/666 (32%), Positives = 350/666 (51%), Gaps = 68/666 (10%)
Query: 430 IQNDVNAFIDST-----KAQSSSGNKVPIPGLKQALEKKEGLFRKHMMGKRVNYAARSVI 484
+Q V FID+ +A SG P+ L L+ KEG R ++MGKRV+++AR+VI
Sbjct: 267 LQFHVATFIDNDIGGLPQALQKSGR--PLKSLSARLKGKEGRIRGNLMGKRVDFSARTVI 324
Query: 485 SPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKWPGATQIQNEDGSFV 544
+PDPNI E+GVP A T+PE VT++N+ L + V GP++ PGA + DG +
Sbjct: 325 TPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKI 384
Query: 545 SLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKNRDVVIMNRQPTLHKASMMGHK 604
L + D+ V RH+++ DVV+ NRQP+LHK SMM H
Sbjct: 385 DL----------------NFNRSDIRLEEGYVVERHMQSGDVVLFNRQPSLHKMSMMAHY 428
Query: 605 VRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXXXXXXXTDSQYLTPTSGS 664
RV+ G KT RL+ + T YNADFDGDEMN+H PQ Q ++P S
Sbjct: 429 ARVM-GNKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSRQIISPQSNK 487
Query: 665 PVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG-----CIRPEDGHATRNKL------- 712
PV G++QD ++ T +D+F + +Y C P G A + L
Sbjct: 488 PVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYAVNLEFCDIPL-GDAVQTGLRKGKDYD 546
Query: 713 ---VTIPPAVMKPEPLWTGKQIITTVLLNTCPANMPGINLNSKNKIKNEYWGKSSEENNV 769
+ PA+ KP LWTGKQ+++ VL N+ I L+S++ ++ ++ + V
Sbjct: 547 IMKILRKPAIAKPMRLWTGKQVLSFVL-----PNLNYIGLSSEHDDDDK---ENIGDTRV 598
Query: 770 VFKDGQLLCGILDKSQYGASKFGIVHSLHEVYGPDVAAKVLSVLGRLFTNYITAT-AFTC 828
+ +DG + G++DK GA++ G+VH + +GP AA+ + R+ ++T F+
Sbjct: 599 IIQDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSM 658
Query: 829 GMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGELLKRLEEILRDDNK 888
G+ D + K ++++++ R A EV+ L ++ + + L+RL + ++
Sbjct: 659 GIGDTIADPKTVK----VVESAI---RKAKEEVSALIENARQNR---LERLPGMTMKESF 708
Query: 889 LGILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLG 948
L+ + + + ++ + + + N+M+ M L+G+KGS +N+SQ+ +G
Sbjct: 709 ESHLNLVLN-RARDVSGTSAQRSLSEN-------NNMKTMVLAGSKGSFINISQVTACVG 760
Query: 949 QQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGLID 1008
QQ +EG+R+P S +TLP F + ++ G+++ + +G+ P+E++FH M GREGLID
Sbjct: 761 QQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREGLID 820
Query: 1009 TAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAVDIT-KESHMTEFK 1067
TA+KT+ +GY+QR L K LE + D SVR G+G + Q YG D D T ES + K
Sbjct: 821 TAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQIKYGEDGFDATFLESQKVDVK 880
Query: 1068 FCVDNY 1073
Y
Sbjct: 881 NFTKRY 886
Score = 75.1 bits (183), Expect = 9e-13
Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 12/157 (7%)
Query: 1504 ENGKRVLVTEGVNFQAMWDQDDFIDINGIR-----------SNDVAAVLKTYGVEAARNT 1552
+N K+V ++E + + + Q D I ++ I SND+ + +T G+EAAR +
Sbjct: 1251 KNVKKVYISEDKDRKEWYLQTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARES 1310
Query: 1553 IVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGMES-STSSLMKMSYETTCQ 1611
I+ E+ V V++RH+ L+AD+MT +G R G+ +L + S+E T +
Sbjct: 1311 ILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVE 1370
Query: 1612 FLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLL 1648
L A L +E + + I+MG+L +GTG+ +++
Sbjct: 1371 ILLDAALVSEKNICRGITENIMMGQLAPMGTGNIEIM 1407
Score = 71.2 bits (173), Expect = 1e-11
Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 5/84 (5%)
Query: 1158 DENVNEKKFRALMQL---KYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAAN 1214
+ +N + F ++++ K +++ I P E VG +A+QSVGEP+TQMTLNTFH AG A+
Sbjct: 1019 EHRLNTEAFNWVVEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAG-VAST 1077
Query: 1215 VTLGIPRMREIIMTASAAIKTPQL 1238
VT+G+PR++E I + +KTP +
Sbjct: 1078 VTMGVPRLKE-IFNVTKNLKTPSM 1100
Score = 69.3 bits (168), Expect = 5e-11
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 7 VGAEITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAFLKN-LCATC 65
V +I SI F + + DE+R S + +P V++ G P GGL DL +G + LC +C
Sbjct: 6 VKKQIKSIQFGLFSPDEVRNGSVALIVHPEVMEG-GVPKTGGLIDLRMGTTDRMYLCQSC 64
Query: 66 GLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRL 110
G D CPGH GHIEL P ++ + +++ L C +C ++
Sbjct: 65 GGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKI 109
>CE28300 [K] KOG0260 RNA polymerase II large subunit
Length = 1852
Score = 332 bits (851), Expect = 3e-90
Identities = 195/608 (32%), Positives = 318/608 (52%), Gaps = 52/608 (8%)
Query: 452 PIPGLKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPV 511
P+ +KQ L+ KEG R ++MGKRV+++AR+VI+ DPN+ + +GVP A LT+PE V
Sbjct: 329 PLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIV 388
Query: 512 TAYNVAELRQAVINGPDKWPGATQIQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAH 571
T +NV +L++ V G ++PGA E+G+ V L P D+
Sbjct: 389 TPFNVDKLQELVNRGDTQYPGA----KENGARVDL--------------RYHPRAADLHL 430
Query: 572 SINKKVYRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGD 631
+V RH+K+ D+++ NRQPTLHK SMMGH+V++LP T R++ + T YNADFDGD
Sbjct: 431 QPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWS-TFRMNLSVTSPYNADFDGD 489
Query: 632 EMNMHFPQXXXXXXXXXXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQ 691
EMN+H PQ Q +TP + PV G++QD + A +T +D F
Sbjct: 490 EMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWP- 548
Query: 692 YQQYIYGCIRPEDGHATRNKLVTIPPAVMKPEPLWTGKQIITTVLLNTCPANMPGINLNS 751
+ + + DG + PA++KP+PLWTGKQ+ + ++ P N+ + +S
Sbjct: 549 FMMDLLMYLPTWDGKVPQ-------PAILKPKPLWTGKQVFSLII----PGNVNVLRTHS 597
Query: 752 KNKIKNE---YWGKSSEENNVVFKDGQLLCGILDKSQYGASKFGIVHSLHEVYGPDVAAK 808
+ + Y S + V+ + G+LL GI+ G S ++H + G ++AA
Sbjct: 598 THPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAAN 657
Query: 809 VLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDV 868
S + + ++ T G+ D T D + ++ N +
Sbjct: 658 FYSHIQTVINAWLIREGHTIGIGD----------------TIAD--QATYLDIQNTIRKA 699
Query: 869 KSDDGELLKRLEEILRDDNKLGILDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAM 928
K D +++++ + L +KVN I + + +N+ ++M
Sbjct: 700 KQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSM 759
Query: 929 ALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYS 988
+SG+KGS +N+SQ++ +GQQ +EG+R+P +TLP F + + G+++ + +
Sbjct: 760 VVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLA 819
Query: 989 GIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQF 1048
G+ P E++FH M GREGLIDTAVKT+ +GY+QR L K +E V ++YD +VR+ ++Q
Sbjct: 820 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQL 879
Query: 1049 LYGGDAVD 1056
YG D +D
Sbjct: 880 RYGEDGLD 887
Score = 90.1 bits (222), Expect = 3e-17
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 38/230 (16%)
Query: 1453 FDDDEGKWCEFKLELAGDTE-----------------KLLMVNIVEDICRKSIIRQVPHI 1495
+ DD + F+L +AG+ + + + N++ D+ ++ +P I
Sbjct: 1237 YTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLT----LQGIPAI 1292
Query: 1496 DRCV--HPEPENGKRVLVTEGVNFQAMWD--------------QDDFIDINGIRSNDVAA 1539
+ P ++ KR+++T F+++ D + ID SND+
Sbjct: 1293 SKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICE 1352
Query: 1540 VLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQGM-ESST 1598
+ + G+EA R I E++NV S V++RHL L+ D+MT +G+ +A R G+
Sbjct: 1353 IFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEV 1412
Query: 1599 SSLMKMSYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLL 1648
+LM+ S+E T L +A + E + +K S I++G+L GTG FDL+
Sbjct: 1413 GALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV 1462
Score = 86.3 bits (212), Expect = 4e-16
Identities = 42/90 (46%), Positives = 63/90 (69%), Gaps = 4/90 (4%)
Query: 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTA 1229
++ ++ +++ PGE VG +A+QS+GEP+TQMTLNTFH+AG A NVTLG+PR++EII
Sbjct: 1062 IESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEII-NV 1120
Query: 1230 SAAIKTPQLTMPIRDDVS---DELADTFCK 1256
S +KTP LT+ + + ++ D CK
Sbjct: 1121 SKTLKTPSLTVFLTGAAAKDPEKAKDVLCK 1150
Score = 61.6 bits (148), Expect = 1e-08
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 2/104 (1%)
Query: 11 ITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAF-LKNLCATCGLDE 69
++ + F +L +EI+++S V P V +N G P GGL D G + C TC +
Sbjct: 15 VSRVQFGILGPEEIKRMSVAHVEFPEVYEN-GKPKLGGLMDPRQGVIDRRGRCMTCAGNL 73
Query: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSS 113
CPGH GH+EL P ++ F + LR C +C + S
Sbjct: 74 TDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKS 117
>7293125 [K] KOG0261 RNA polymerase III large subunit
Length = 1259
Score = 212 bits (540), Expect = 4e-54
Identities = 132/383 (34%), Positives = 203/383 (52%), Gaps = 19/383 (4%)
Query: 892 LDAITSSKVNSITSQVVSKCVPDGTMKKFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQA 951
L+++ ++++I Q C + P NS MALSG+KGSN+N+SQ++ +GQQA
Sbjct: 622 LESVMLRELSAIREQAAKTCFAE----LHPTNSALIMALSGSKGSNINISQMIACVGQQA 677
Query: 952 LEGRRVPVMVSGKTLPSFKPFETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGLIDTAV 1011
+ G+RVP + LP F+ A G+++ FYSG+ P E++FH MAGREGL+DTAV
Sbjct: 678 ISGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAV 737
Query: 1012 KTSRSGYLQRCLTKQLEGVHISYDNSVRDGDGTLIQFLYGGDAVDITKESHMTEFKFCVD 1071
KT+ +GYLQR L K LE + + YD +VR+ ++ +YGGD +D + V
Sbjct: 738 KTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDLVH 797
Query: 1072 NYDALLKKYNPSALVDHLDVESAXXXXXXXXXXXXXXXXXPHYAQTSKYDPVLSKFNPSK 1131
YD L+ +P L+ E P +A+ K +
Sbjct: 798 QYDN-LRAQHPQGKDRPLNAEE-------MSEALETLLRTPEFAEARDD----FKLDVRN 845
Query: 1132 YLGAVSENFQDKLEKFISTNDDFFKKDENVNEKKFRALMQL--KYMRSLINPGEAVGIIA 1189
++ VS+ +++ D + + E+ + + ++ +Y R++ PG AVG IA
Sbjct: 846 HINTVSKRIGQLQKRYEKCIDLCHQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIA 905
Query: 1190 SQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASAAIKTPQLTMPIRDDVSDE 1249
+QS+GEP TQMTL TFHFAG + N+T G+PR+ EII A+ I TP +T + + S E
Sbjct: 906 AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEII-NATKTISTPIITAELENCHSME 964
Query: 1250 LADTFCKNITKVMLSEVIDKVQV 1272
A I K L+E+ V+V
Sbjct: 965 FARQVKARIEKTTLAELSSYVEV 987
Score = 194 bits (493), Expect = 1e-48
Identities = 112/300 (37%), Positives = 162/300 (53%), Gaps = 19/300 (6%)
Query: 455 GLKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAY 514
G+ Q L+ K+G FR ++ GKRV+++ R+VISPDPN+ N++GVP A LTYPE V
Sbjct: 339 GIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPA 398
Query: 515 NVAELRQAVINGPDKWPGATQIQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSIN 574
N+ +R+ V NGP PGA +Q SF + R+ +A +L
Sbjct: 399 NIRHMRELVRNGPSMHPGANYVQQRGSSFKKY--LAYGNREKVAQEL----------KCG 446
Query: 575 KKVYRHIKNRDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMN 634
V RH+++ D+V+ NRQP+LHK S+M H+ +V P ++T R + YNADFDGDEMN
Sbjct: 447 DVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQP-QRTFRFNECACTPYNADFDGDEMN 505
Query: 635 MHFPQXXXXXXXXXXXXXTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQ 694
+H PQ S +TP +G + QD I+ G LT K+ F T+E+ Q
Sbjct: 506 LHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQ 565
Query: 695 YIYGCIRPEDGHATRNKLVTIPPAVMKPEPLWTGKQIITTVLLNTCPANMPGINLNSKNK 754
+ C + KL PPA++KP LWTGKQ+ + ++ P + + LN NK
Sbjct: 566 -LAACFLANEDSTMHIKLP--PPALLKPRRLWTGKQMFSLLMR---PNDDSQVRLNMVNK 619
Score = 76.3 bits (186), Expect = 4e-13
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 1533 RSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGNYLAFNRQ 1592
RSN++ + +T G+EAAR I++EI V + +SV +RH+ L+A MT +G L R
Sbjct: 1116 RSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRH 1175
Query: 1593 GMESSTSSLMKM-SYETTCQFLTKAVLDNEHEELKSPSAKIVMGKLNGVGTGSFDLLSK 1650
G+ S+ + S+E T L A + + + S +I++G +GTG F LL +
Sbjct: 1176 GLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQ 1234
Score = 57.4 bits (137), Expect = 2e-07
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Query: 10 EITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAFLKN-LCATCGLD 68
+I+ + F + +DEI++ + ++ + + P+ G+ D +G K+ +C TCG
Sbjct: 14 KISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCGQG 73
Query: 69 EKFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEVHLYACKLRLLQYA 128
C GH G+++L +P ++ F L+ C C H LK + LY KL ++
Sbjct: 74 LNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNPNFS 133
Query: 129 LIDER 133
+ ++
Sbjct: 134 YLGKK 138
>At1g63020_1 [K] KOG0260 RNA polymerase II large subunit
Length = 1316
Score = 105 bits (261), Expect = 8e-22
Identities = 139/634 (21%), Positives = 245/634 (37%), Gaps = 113/634 (17%)
Query: 471 MMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTAYNVAELRQAVINGPDKW 530
++GKR ++ R+V+ DP+++ NEIG+P A +L E + N L
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVT--------- 363
Query: 531 PGATQIQNEDGSFVSLVGMTLEQRKALANQLLTPSTHDVAHSINKKVYRHIKNRDVVIMN 590
SFV + E ++L+ +D+ K++R + + D V+MN
Sbjct: 364 -----------SFVPTLLDNKEMHVRRGDRLVAIQVNDL--QTGDKIFRSLMDGDTVLMN 410
Query: 591 RQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQXXXXXXXXXXX 650
R P++H+ S++ VR+LP + L+ + DFDGD ++ + PQ
Sbjct: 411 RPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDEL 470
Query: 651 XXTDSQYLTPTSGSPVRGLIQDHISAGVWL-TSKDSFFTREQYQQYIYGCIRPEDGHATR 709
D Q + +G + L QD ++A + K+ + R Q QQ C
Sbjct: 471 VALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYC---------- 520
Query: 710 NKLVTIPPAVMK-----PEPLWTGKQIITTVLLNTCPANMPGINLNSKNKIKNEYWGKSS 764
PPA++K EP WTG Q+ + PG + +
Sbjct: 521 -PFQLPPPAIIKASPSSTEPQWTGMQLFGMLF-------PPGFDY-------------TY 559
Query: 765 EENNVVFKDGQLLCGILDKSQYGASKFGIVHSL--HEVYGPDVAAKVLSVL---GRLFTN 819
NNVV +G+LL + + + L H+ KVL ++ + +
Sbjct: 560 PLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLLKHD------KGKVLDIIYSAQEMLSQ 613
Query: 820 YITATAFTCGMDDLRLTAEGNKWRNDILQTSVDIGRVAAAEVTNLDKDVKSDDGELLKRL 879
++ + + DL L+++ +N L + G A +V N + + + L
Sbjct: 614 WLLMRGLSVSLADLYLSSDLQSRKN--LTEEISYGLREAEQVCNKQQLMVESWRDFLAVN 671
Query: 880 EEILRDDNKLGILDAITSSKVNSITSQVVSKCVPDG--TMKKFPY------NSMQAMALS 931
E +D+ + + ++ S++ D ++ Y NS M+ +
Sbjct: 672 GEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYRDVQALAYRYGDQSNSFLIMSKA 731
Query: 932 GAKGSNVNVSQIMCLLGQQ-----------------ALEGRRVPVM-VSGK---TLPSFK 970
G+KG+ + Q +G Q A P+ GK T S+
Sbjct: 732 GSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAWNDPNSPLRGAKGKDSTTTESYV 791
Query: 971 PFETDARAGGYIKGRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGV 1030
P+ G I+ F +G+ P E + H + R+ + G L R L + +
Sbjct: 792 PY-------GVIENSFLTGLNPLESFVHSVTSRDS--SFSGNADLPGTLSRRLMFFMRDI 842
Query: 1031 HISYDNSVRDGDGT-LIQFLY--GGDAVDITKES 1061
+ +YD +VR+ G L+QF Y G DIT E+
Sbjct: 843 YAAYDGTVRNSFGNQLVQFTYETDGPVEDITGEA 876
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,733,169
Number of Sequences: 60738
Number of extensions: 3960730
Number of successful extensions: 13464
Number of sequences better than 1.0e-05: 22
Number of HSP's better than 0.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13207
Number of HSP's gapped (non-prelim): 92
length of query: 1653
length of database: 30,389,216
effective HSP length: 120
effective length of query: 1533
effective length of database: 23,100,656
effective search space: 35413305648
effective search space used: 35413305648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)