ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6301 good O KOG1943 Posttranslational modification, protein turnover, chaperones Beta-tubulin folding cofactor D
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6301 2193239 2196277 1013
(1013 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR349w [O] KOG1943 Beta-tubulin folding cofactor D 293 9e-79
SPBC11C11.04c [O] KOG1943 Beta-tubulin folding cofactor D 84 9e-16
Hs8400736 [O] KOG1943 Beta-tubulin folding cofactor D 66 3e-10
At3g60740 [O] KOG1943 Beta-tubulin folding cofactor D 63 3e-09
7296003 [O] KOG1943 Beta-tubulin folding cofactor D 52 5e-06
CE09437 [O] KOG1943 Beta-tubulin folding cofactor D 52 6e-06
>YOR349w [O] KOG1943 Beta-tubulin folding cofactor D
Length = 1014
Score = 293 bits (750), Expect = 9e-79
Identities = 288/1048 (27%), Positives = 482/1048 (45%), Gaps = 123/1048 (11%)
Query: 12 LIRKLQHGMSDFT--NFEETIGVLQLFEVDPLILEKALPSLINELLSTYFTTNTDNRLKI 69
L+ +Q G+ + ++TI + F+ DP +L+ LP + L ++F + ++ +
Sbjct: 7 LLDSIQSGVQTVSPEKHQQTIAAINKFQDDPALLDTILPRCVPLLTKSFFCMSQRDQKLV 66
Query: 70 ARLFYEYSKIFKNKRIRVQIPIKIYDLSKVLALLK------SSQDWHSQYLLITWLAMLV 123
A LFY KI +K ++ + I+ L+++L L+ S D YL ++WL++++
Sbjct: 67 AELFYNLDKISHSKVLK-SLDTSIFRLNEILNYLQDRASPSSFSDVLCVYLNLSWLSVIL 125
Query: 124 ISPFKF-DNDTEILLIVSKFNHMALMRPLISNIKAELWSKNY--ALIELPEKISQVDPID 180
+SP+ F D + L + S+F + + P I+ IKA L+ KN+ A +LPE+ Q +
Sbjct: 126 LSPYAFKDKFNKTLQVSSRFENYPICIPPINKIKAVLYFKNFTDAFDQLPER-EQANVPF 184
Query: 181 LSYMLKTL---KHKTTYPFSIEQLIEFTQYITSLTSFDKEIDALYTLQLLPHFVTVLANR 237
L+ LK K Y FS E L Q S ++LLP + N
Sbjct: 185 LNQFLKLFIQSSEKANYYFSNENLRHLQQVALSNDG----------IKLLPKLFQISFNH 234
Query: 238 DETYSCIYDILFWMTSTINLSFTDLRFKLAKSVSKIVLFVSNIDEESSEMIITDCVNDTE 297
++ + I+ + ++ + TD RF+LA S +KI F+ D S +I + +T
Sbjct: 235 G-SHDILDAIVEFFHDHLSSNSTDTRFQLAHSFAKIAKFLHQADPASFIELIDYTIENTV 293
Query: 298 ALLKTNSNESMDSDRLHTFLLIQAEFCRSRLLTISHIRKFTQSILPVISKFQQKRMMSTQ 357
+LL+ +S+DS+ LHT LLI AE +++L I + + I+P FQ+ +
Sbjct: 294 SLLQAPC-DSIDSNELHTSLLIIAEVALAKILPIDLVDRVLTLIIPKTCHFQKSHFQIIK 352
Query: 358 GHQIRDAANFFCWSAFRSYTNIEL--QSLKNMFLNLLFTANFDHSPLIRKSAMAALQECL 415
GH IRD+ NF WS RS + L Q L+++ +LL A FD +IR S+ AALQE L
Sbjct: 353 GHHIRDSTNFIIWSVIRSNRSNSLSPQVLQSLLSHLLINAFFDPELIIRYSSFAALQELL 412
Query: 416 GRQGNVL-LDNVTVLRLAEMHFGQL-----SNALTLFELFNGR---------YESYIDEM 460
GR L L+ + + + ++ L N+ + LFN ++ + D
Sbjct: 413 GRSNKSLALNQNDIALILQANWKDLPRSFEENSGLIRRLFNPENTSKSAVCVWKVFRDWS 472
Query: 461 VQW-----LVLYSVGQNYDYQFVEKATSLLSEMTSQINEKSLSNMVSKYINEISVKGLKY 515
W L L ++ N DY V S LS + + ++ L+ S + L
Sbjct: 473 FNWNLLENLHLTTMKLNIDYNLVPLIKSKLS--SPALLQEVLNKAGSSVTQNCQILYL-- 528
Query: 516 QDPDICARSVYLQCKIDTESLLKSSDVLAILHQQKIPKVWNDQISFQALAELGGICSLVL 575
YL+ + + K S++ ++Q+KI Q++ QA +
Sbjct: 529 ----------YLKLFENDVNCPKISEICIDIYQKKI----KFQLTTQAKRQFND------ 568
Query: 576 DGSLLSKQQVERIFLIARHAQMNHSN---------YDDI---SKLLNQLVSFISADSEPF 623
+ ++ +IF+I ++ Q+ N + DI K LN FI +
Sbjct: 569 -----NSPELFQIFVILKYWQLTGQNDFNQELFWKFVDIVSPQKKLNLYNEFIPIIQQII 623
Query: 624 DDSSTECSFWAIFYQLFRLQQPLIC---CAAPFLSQNQFISLFYDSVSKMSCEYKGKMID 680
S + QL + L C C P Q + SLF+ +S + + +I
Sbjct: 624 --SQCVSLNYTRIVQLIKSDNELTCRSICHMP--DQEKMCSLFFSQFPLLSPQSRSLLIG 679
Query: 681 SLSQAIS-RYS--PDEHLQIFLQDVVLFLDDYTTTDKGDVGRLTRLSTVNLILKHSMLFR 737
L R S P + F ++ LDDYT T +GDVGRL R+ + L+ H F
Sbjct: 680 ELDHHWDVRISLLPSNSYRKFRNIIINCLDDYTITQQGDVGRLVRIQALKLMQSHPD-FL 738
Query: 738 KLTCLPFIENSLLRLTGEPSTEIRLKCFEALCTLRH---VSLENPPCNFNAIRLYNLHYR 794
C I L RL EP EIR ++ L + V ++ NF H +
Sbjct: 739 SGDC-DSINPKLTRLLAEPVPEIRKLSYQLLASATSQITVLSDSSILNFR-------HKQ 790
Query: 795 G-NNEFWKGYFFSAGAIHSTDRLISSAIDDLLTYYQGLELADRLLQLNEFARIVPSAKEF 853
G + EFWKGY SAGAIH TD ++S+ID + YY+ L + +L ++ RI+PSAK+
Sbjct: 791 GLSEEFWKGYAVSAGAIHFTDSQLTSSIDSFIVYYRSLSPSQQLELCHDLIRIIPSAKQI 850
Query: 854 EELK-ASKMRNNILGTIPREIIKSTITFLNCWCRMLESG-ITLEEDFNYSGFFARVYNLQ 911
E + + ++ + G + + IK TI + W R++ESG + L +FN+ G FA+ YNL
Sbjct: 851 AESRIRDRNKDPLTGGMRFDTIKFTIHCVKFWTRIMESGLVVLHPNFNFQGVFAKFYNLH 910
Query: 912 LA-ARSVSVTSYAFRLLTLLVCHQILNVRKNSAQFANTFIKILL----KQLAAAKQRTEF 966
L ++ V+ F + C+ + + +N +K LL ++ AA K ++F
Sbjct: 911 LLDCTTLRVSVIKFFPFLAISCYHTMRENADQKNLSNIILKRLLVLVKREYAATK--SKF 968
Query: 967 SSIQNVALESLTHIYICADRNKKIELIQ 994
+ QNVAL+ + I++ ++++ +Q
Sbjct: 969 MTDQNVALQGMFQIFLELGVTRQLQALQ 996
>SPBC11C11.04c [O] KOG1943 Beta-tubulin folding cofactor D
Length = 1107
Score = 84.3 bits (207), Expect = 9e-16
Identities = 178/863 (20%), Positives = 353/863 (40%), Gaps = 125/863 (14%)
Query: 4 TARLSK---DVLI-RKLQHGMSDFTNFEETIGVLQLFEVDPLILEKALPSLINELLSTYF 59
T+RLS+ DVL R H + + + LQ + P +L+K L + L S
Sbjct: 19 TSRLSQILDDVLDDRSSSHSVEKLKDV--AVKYLQFCQFQPTLLDKLLSKYVPNLASYLL 76
Query: 60 TTNTDNRLK-IARLFYEYSKIFKNKRIRVQIPIKIYDLSKVLALLKSSQD--WHSQYLLI 116
+ I + Y++ KI K +RV P+ + + ++ LL S + WH Y+++
Sbjct: 77 KVKNIGKCNSITVILYQFCKIRGYKAVRVLFPVGVQYIKELYTLLNESSNNTWHFHYIVL 136
Query: 117 TWLAMLVISPFKFDNDTEILLIVSKFNHMALMRPLISNIKAELWSKNYALIELPEKISQV 176
WL+ + +PF ++ + L + +A+ S I K + + L S+
Sbjct: 137 LWLSQALNTPFPLNSLDDSLDVKKTIYTIAIKYLENSGI-----DKEASCLVLSRLFSRD 191
Query: 177 DPIDL----------SYMLKTLKHKTTYPFSIEQLIEFTQYITSLTSFD----------- 215
D +DL S+ +++ +K FS+ ++ L + D
Sbjct: 192 DGLDLLLGFLHHCESSWFKRSIFYKIGCLFSLSSFLKICPRNDCLQTVDVAFQFLNVARE 251
Query: 216 ----KEIDAL-------YT--------LQLLPHFVTVLANRDETYSCIYD---------- 246
+E AL YT + P++ ++N D + D
Sbjct: 252 DLVGQENSALRKLLCKCYTRLGIVLLPVNSSPNWKYSISNPDSFFQLPDDSNEEVHIYLE 311
Query: 247 -ILFWMTSTINLSFTDLRFKLAKSVSKIVLFVS-NIDEESSEMIITDCVNDTEAL--LKT 302
I+ ++ S+++ + +R+ AK ++KI+ + N+ E+ + II + + + L ++
Sbjct: 312 VIVDFLLSSVSDIDSFVRWSAAKGLAKIISRLPWNLAEQVIDAII-ELMTENMFLNPIEN 370
Query: 303 NSNESMDSDRL-HTFLLIQAEFCRSRLLTISHIRKFTQSILPVIS---KFQQKRMMSTQG 358
N S+ S + H +L A+ + L+ S ILP+I ++ + G
Sbjct: 371 TVNISITSPLVWHGAILFFAKLAGAGLIKYSKCLH----ILPLIEVGLSYEVRYGTRVTG 426
Query: 359 HQIRDAANFFCWSAFRSYTNIELQSLK-NMFLNLLFTANFDHSPLIRKSAMAALQECLGR 417
IRDA+ +F WS + Y+ ++ L+ N+ L LL T FD+ +R++A AAL E +GR
Sbjct: 427 QSIRDASCYFVWSFYHCYSKSAIEGLQTNLILCLLQTVLFDNEINVRRAATAALFEVIGR 486
Query: 418 QGNV-----LLDNVTVLRLAEMH--FGQLSNALTLFELFNGRYESYIDEMVQWLVLYSVG 470
++ L+ ++ + + ++ +G L + F F + L++
Sbjct: 487 HASIPDGLSLISHINYVSVTDISNCYGDLCMKVAHFPQFRS---------CVFQRLFTNL 537
Query: 471 QNYDYQFVEKATSLLSEMTSQINEKSLSNMVSKYINEISVK------GLKYQDPDICARS 524
Q++D + + + L +++ + K LS + ++ +SV G I
Sbjct: 538 QHWDVKVQQLSAFSLRQLSIKY-PKELSIYLPPILDYLSVGNADFIFGYTIGLASIIGGF 596
Query: 525 VYLQCKIDTESLLKSSDVLAILHQQKIPKVWNDQISFQALAELGGICSLVLDGSLLSKQQ 584
+ + D + D+L+ + + K Q + L L GI + + + +
Sbjct: 597 LSISFPFDINRI---HDLLSHKNLLSLKKFSRQQQTKIILGILKGIQQIFANDIRVDRAF 653
Query: 585 VERIF--LIARHAQMNHSNYDDISKLLNQLVSFISADS--EPFDDSSTECSFWAIFYQLF 640
F +IA + DIS + LV F + E D +CS ++
Sbjct: 654 FSEAFSVIIAAIDLQEETIIKDISDAYSVLVKFDDMEETLEVLLDYIRKCSTSKEARIVY 713
Query: 641 RLQQPLICCAAPFLSQNQFISLFYDSVSKM-SCEYKGKMIDSLSQAIS-RYSPDEHLQIF 698
+ Q L + F Q + L D ++ S +Y+ + ++L I Y E ++ F
Sbjct: 714 IILQNLPNIS--FRYQKKICKLLLDIYPQLHSIDYQAPVANALQNIIPFTYEKTESIEEF 771
Query: 699 LQDVVLFLDDYTTTDKGDVG---RLTRLSTVNLILKHSMLFRKLT------CLPFIENSL 749
+++++ +Y T +GDVG R + ++ +L +KL+ C+ +I
Sbjct: 772 VKELLQVCSNYLTDTRGDVGSWIRKPAMKAISSLLVKDSSGKKLSEDIVWCCISYI---- 827
Query: 750 LRLTGEPSTEIRLKCFEALCTLR 772
+R T + +R ++AL +R
Sbjct: 828 IRQTFDKIDSLRGLAYQALEQIR 850
>Hs8400736 [O] KOG1943 Beta-tubulin folding cofactor D
Length = 1192
Score = 65.9 bits (159), Expect = 3e-10
Identities = 106/479 (22%), Positives = 183/479 (38%), Gaps = 61/479 (12%)
Query: 314 HTFLLIQAEFCRSRLLTISHIRKFTQSILPVISKFQQKRMMSTQGHQIRDAANFFCWSAF 373
H L AE R LL S + IL ++ + +KR + G +RDAA + C +
Sbjct: 417 HGGCLALAELGRRGLLLPSRLVDVVAVILKALT-YDEKRGACSVGTNVRDAACYVCCAFA 475
Query: 374 RSYTNIELQSLKNMFLN-LLFTANFDHSPLIRKSAMAALQECLGRQGNVLLDNVTVLRLA 432
R+Y EL+ + L+ A FD R++A AA QE +GRQG + +L A
Sbjct: 476 RAYEPQELKPFVTAISSALVIAAVFDRDINCRRAASAAFQENVGRQG-TFPHGIDILTTA 534
Query: 433 E-MHFGQLSNALTLFELFNGRYESYIDEMVQWLVLYSVGQNYDYQFVEKATSLLSEMTSQ 491
+ G SN + +F + Y M+ LV + ++D E A L + Q
Sbjct: 535 DYFAVGNRSNCFLVISVFIAGFPEYTQPMIDHLVTMKI-SHWDGVIRELAARALHNLAQQ 593
Query: 492 INEKSLSNMVSKYINEISVKGLKYQDPDI--CARSVYLQCKIDTESLLKSSDVLAILHQQ 549
E S + + + ++ L + I CA Y K+ + +D L Q
Sbjct: 594 APEFSATQVFPRLLSMTLSPDLHMRHGSILACAEVAYALYKLAAQENRPVTDHLDEQAVQ 653
Query: 550 KIPKVWNDQISFQALAELGG------ICSL---------------VLDG-SLLSKQQVER 587
+ ++ Q LGG +C L V+DG L +
Sbjct: 654 GLKQIHQQLYDRQLYRGLGGQLMRQAVCVLIEKLSLSKMPFRGDTVIDGWQWLINDTLRH 713
Query: 588 IFLIARHA--QMNHSNYDDISKLLNQLVSFISADSEPF---------------DDSSTEC 630
+ LI+ H+ QM + ++ L ++ +++P + T C
Sbjct: 714 LHLISSHSRQQMKDAAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNPEEMTRC 773
Query: 631 SFWAI------FYQLFRLQQPLICCAAPFLSQNQFISLF---YDSVSKMS--CEYKGKMI 679
F F RLQQ L A + + +S D + ++ C+ G
Sbjct: 774 GFSLALGALPGFLLKGRLQQVLTGLRAVTHTSPEDVSFAESRRDGLKAIARICQTVGVKA 833
Query: 680 DSLSQAISRYSPDEHLQIFLQDVVLFLDDYTTTDKGDVGRLTRLSTVNLILKHSMLFRK 738
+ +A+ E++ ++ +DDYTT +GDVG R + + ++ ++L +
Sbjct: 834 GAPDEAVC----GENVSQIYCALLGCMDDYTTDSRGDVGTWVRKAAMTSLMDLTLLLAR 888
>At3g60740 [O] KOG1943 Beta-tubulin folding cofactor D
Length = 1249
Score = 62.8 bits (151), Expect = 3e-09
Identities = 123/588 (20%), Positives = 242/588 (40%), Gaps = 79/588 (13%)
Query: 206 QYITSLTSFDKEIDALYTLQLLP-HFVTVLANRD----------ETYSCIYDILFWMTST 254
+Y+ S + + + +L P H VT + + + + +I+ + S
Sbjct: 346 RYVAQTASLSENMSTSSSQRLAPDHTVTAILQPESLDDQEDEDMDVPEILEEIIEMLLSG 405
Query: 255 INLSFTDLRFKLAKSVSKIVLFVSNIDEESSEMIITDCVNDTEALLKTNSNESMDSDRLH 314
+ + T +R+ AK + ++ S + S+ +++ ++L+ S D H
Sbjct: 406 LRDTDTVVRWSAAKGIGRVT---SRLTSVLSDEVLS-------SVLELFSPGEGDGS-WH 454
Query: 315 TFLLIQAEFCRSRLLTISHIRKFTQSILPVISK---FQQKRMMSTQGHQIRDAANFFCWS 371
L AE R LL + + ++PVI K + +R + G +RDAA + CW+
Sbjct: 455 GGCLALAELARRGLL----LPRSFPLVVPVIVKALHYDVRRGPHSVGSHVRDAAAYVCWA 510
Query: 372 AFRSYTNIELQS-LKNMFLNLLFTANFDHSPLIRKSAMAALQECLGRQGNVLLDNVTVLR 430
R+Y++ ++++ L + +LL +FD R++A AA QE +GRQGN + ++
Sbjct: 511 FGRAYSHKDMKNVLDQLAPDLLIVGSFDREVNCRRAAAAAFQENVGRQGN-YPHGIDIVS 569
Query: 431 LAE-MHFGQLSNALTLFELFNGRYESYIDEMVQWLVLYSVGQNYDYQFVEKATSLLSEMT 489
+A+ N+ + +YE Y+ V L LY+ ++D E A L+ +
Sbjct: 570 IADYFSLSSRVNSYLQVAVSIAQYEGYLYPFVDEL-LYNKICHWDKSLRELAAEALAPLV 628
Query: 490 SQINEKSLSNMVSKYIN-EISVKGLKYQDPDICARSVYL---QC--KIDTESLLKSSDVL 543
+ + ++ K I +S + A V L QC + +S + + ++
Sbjct: 629 KYEPKHFANYVLEKLIPCTLSTDLCMRHGATLAAGEVVLALHQCGYVLSADSQKRMAGIV 688
Query: 544 AILHQQKIPKVWNDQISFQALAELGGICSLVLDGSLLSKQQVERIFLIARHAQMNHSNYD 603
+ + ++ + +I A++ SL + ++ ERI L + H N
Sbjct: 689 PSIEKARLYRGKGGEIMRLAVSRFIECISL---SHVTLAERTERILLDTLTENLRHPN-- 743
Query: 604 DISKLLNQLVSFISADSEPFDDSSTECSFWAIFYQLFRLQQPLI------CCAAPFLSQN 657
S++ N VS + + + + + S I L L P + A L
Sbjct: 744 --SQIQNAAVSAVKQLVQSYLVGNDKKSVDLILKHLKHLTDPNVAVRRGSALALGVLPYE 801
Query: 658 QFISLFYDSVSKM--SCE----------------YKG--KMIDSLSQAISRYSPDEHLQI 697
+ + D V K+ +C+ KG + ++L+Q + ++ L +
Sbjct: 802 LLTAKWKDIVLKLCSACKIEVNPEDRDAEARVNAVKGLTSVCETLTQKRASDPGNDDLSL 861
Query: 698 FL------QDVVL-FLDDYTTTDKGDVGRLTRLSTVNLILKHSMLFRK 738
FL D +L LDDY+ ++GDVG R + V+ + K + + K
Sbjct: 862 FLLIKTEVMDTLLKALDDYSVDNRGDVGSWVREAAVHGLEKCTYILCK 909
>7296003 [O] KOG1943 Beta-tubulin folding cofactor D
Length = 1189
Score = 52.0 bits (123), Expect = 5e-06
Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 13/227 (5%)
Query: 244 IYDILFWMTSTINLSFTDLRFKLAKSVSKIVLFVSNIDEESSEMIITDCVNDTEALLKTN 303
I +++ + + D+R+ AK + ++ + + +E ++ +I ++ L
Sbjct: 352 IEEVIEELLQALRSGGNDIRWSAAKGLGRVT---NRLPKELADEVIGSVIDILNPL---- 404
Query: 304 SNESMDSDRLHTFLLIQAEFCRSRLLTISHIRKFTQSILPVISKFQQKRMMSTQGHQIRD 363
+ H L AE + LL + + ++ + + K MS G IRD
Sbjct: 405 ----EPHEAWHGACLALAELAKRGLLLPHRLEELVPLLMQALFYDEMKGYMSV-GQHIRD 459
Query: 364 AANFFCWSAFRSYTNIELQSLKNMFLN-LLFTANFDHSPLIRKSAMAALQECLGRQGNVL 422
+A + CW+ R+Y +++ + + LL A FD R++A AA QE +GR GN
Sbjct: 460 SACYMCWAFARAYNPDDVKPFVHKISSGLLTVAVFDREVNCRRAASAAFQESVGRLGNFP 519
Query: 423 LDNVTVLRLAEMHFGQLSNALTLFELFNGRYESYIDEMVQWLVLYSV 469
G N+ + ++E Y + ++ LV + V
Sbjct: 520 FGIEISTTTDFYSVGIRQNSYLNISDYIAQFEVYREPLINHLVQHKV 566
>CE09437 [O] KOG1943 Beta-tubulin folding cofactor D
Length = 1232
Score = 51.6 bits (122), Expect = 6e-06
Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 24/267 (8%)
Query: 248 LFWMTSTINLSFTDLRFKLAKSVSKIVLFVSNIDEESSEMIITDCVNDTEALLKTNSNES 307
L + ++ S T +R+ AK V +I + + N D + T V +++ ++ E
Sbjct: 443 LMHVLEALSHSDTAVRWSAAKGVGRITVRLPNFD------LATQVVG---SIISSHFGEV 493
Query: 308 MDSDRLHTF--LLIQAEFCRSRLLTISHIRKFTQSILPVISKFQQKRMMSTQGHQIRDAA 365
+ H+ L AE +L S + + L + F+ G+Q+RDAA
Sbjct: 494 AEYSSWHSHGACLALAELAHRGVLLPSLLEDIVPA-LELSLVFEDVMGRHQNGNQVRDAA 552
Query: 366 NFFCWSAFRSYT-NIELQSLKNMFLNLLFTANFDHSPLIRKSAMAALQECLGRQGNVLLD 424
+ W+ R+Y ++ L+ + LL A FD +R++A AALQE +GRQ NV
Sbjct: 553 CYAVWALSRTYEPSMMAPYLQRLASALLCGALFDRQVNLRRAASAALQEMVGRQKNV--- 609
Query: 425 NVTVLRLAEMHFGQLSNALTLFE---LFNGRYESYIDEMVQWLVLYSVGQNYDYQFVEKA 481
+ + + + + ++N +E + Y +Y +++ L+ V ++D + E+A
Sbjct: 610 SHGIPLIQSVDYFAVTNRQKCYEHLCVPVAEYSTYSAIILRHLITKKV-VHWDEKIREQA 668
Query: 482 TSLLSEMTSQINEKSLSNMVSKYINEI 508
L +I+E L N+ Y EI
Sbjct: 669 AISL----EKISEIRLENVSDDYYMEI 691
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,670,827
Number of Sequences: 60738
Number of extensions: 2210050
Number of successful extensions: 6116
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6093
Number of HSP's gapped (non-prelim): 18
length of query: 1013
length of database: 30,389,216
effective HSP length: 116
effective length of query: 897
effective length of database: 23,343,608
effective search space: 20939216376
effective search space used: 20939216376
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)