ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6338 good K KOG3149 Transcription Transcription initiation factor IIF, auxiliary subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6338 2208103 2207444 -220
(220 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL107w [K] KOG3149 Transcription initiation factor IIF auxiliar... 317 6e-87
SPAC17G8.07 [K] KOG3149 Transcription initiation factor IIF auxi... 189 2e-48
Hs5729838 [K] KOG3149 Transcription initiation factor IIF auxili... 137 2e-32
CE12388 [K] KOG3149 Transcription initiation factor IIF auxiliar... 132 3e-31
At5g45600 [K] KOG3149 Transcription initiation factor IIF auxili... 124 1e-28
7297196 [K] KOG3149 Transcription initiation factor IIF auxiliar... 120 1e-27
At2g18000 [K] KOG3149 Transcription initiation factor IIF auxili... 107 2e-23
Hs4758720 [K] KOG3149 Transcription initiation factor IIF auxili... 80 2e-15
7299996 [K] KOG3149 Transcription initiation factor IIF auxiliar... 77 2e-14
Hs13492977 [K] KOG3149 Transcription initiation factor IIF auxil... 75 7e-14
SPAC22H12.02 [K] KOG3149 Transcription initiation factor IIF aux... 72 5e-13
HsM5174571 [K] KOG3149 Transcription initiation factor IIF auxil... 72 6e-13
Hs21361272 [K] KOG3149 Transcription initiation factor IIF auxil... 72 6e-13
CE24095 [K] KOG3149 Transcription initiation factor IIF auxiliar... 68 1e-11
ECU03g1600 [K] KOG3149 Transcription initiation factor IIF auxil... 61 1e-09
7297417 [K] KOG3149 Transcription initiation factor IIF auxiliar... 61 1e-09
YPL129w [K] KOG3149 Transcription initiation factor IIF auxiliar... 52 8e-07
>YNL107w [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 226
Score = 317 bits (813), Expect = 6e-87
Identities = 152/221 (68%), Positives = 179/221 (80%), Gaps = 3/221 (1%)
Query: 3 APPVTKRIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKK 62
AP ++KRIKTLSV+RPIIYGNTAKKMG PPNAP +HTHLWTIFVR P+ EDISYFIKK
Sbjct: 2 APTISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKK 61
Query: 63 VVFKLHETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYI 122
VVFKLH+TYPNPVR IEAPPFELTETGWGEF+INIK+YF + +NEK+LNFYH LRLHPY
Sbjct: 62 VVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYA 121
Query: 123 NP---ETKEIERSNDESEVPEDEVKAVYFDEIVFNEPVEQFFQLLMSKPGNLFPSNKTPT 179
NP E++ + + EV +VYFDEIVFNEP E+FF++LMS+PGNL PSNKT
Sbjct: 122 NPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSNKTDD 181
Query: 180 CVFSRQLEQEEIDRIHIGTKKIDKEIKVYEQKLKEAMDPNA 220
CV+S+QLEQEEIDRI IG +K+DKEI +QKL+ + A
Sbjct: 182 CVYSKQLEQEEIDRIEIGIEKVDKEIDELKQKLENLVKQEA 222
>SPAC17G8.07 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 217
Score = 189 bits (481), Expect = 2e-48
Identities = 94/208 (45%), Positives = 135/208 (64%), Gaps = 11/208 (5%)
Query: 9 RIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKVVFKLH 68
R+ ++RPI+ GN AK + AP DHTH W IFV GEDIS +++KVVFKLH
Sbjct: 6 RVSKCQISRPILVGNDAKPLTKEEKEKAPTDHTHTWRIFVEGVDGEDISKWVRKVVFKLH 65
Query: 69 ETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYINPETKE 128
+TY NP R IE+PPFE+ ETGWGEF+I ++I+FA ++EK L FYHHL+LHPY P +E
Sbjct: 66 DTYNNPTRTIESPPFEVIETGWGEFDIMVRIFFAPEAHEKALTFYHHLKLHPY-GPRMEE 124
Query: 129 IERSNDESEVPEDEVKAVYFDEIVFNEPVEQFFQLLMSKP---GNLFPSNKTPTCVFSRQ 185
++ S V++V ++EIVFNEP E ++LL P G+ P FS+Q
Sbjct: 125 MKASG-------GLVESVQYEEIVFNEPFEYTYKLLSQNPIGDGHGLAVESEPDHPFSQQ 177
Query: 186 LEQEEIDRIHIGTKKIDKEIKVYEQKLK 213
LEQ+E D++ +++ K I++Y+Q+++
Sbjct: 178 LEQDEADKLDFAIQEVKKTIEMYKQQVQ 205
>Hs5729838 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 227
Score = 137 bits (344), Expect = 2e-32
Identities = 74/209 (35%), Positives = 121/209 (57%), Gaps = 17/209 (8%)
Query: 9 RIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKVVFKLH 68
R+K +++ +PI+YGN A+ G + HTH WT++V+ R ED+S ++KK+ FKLH
Sbjct: 15 RVKGVTIVKPIVYGNVARYFGKKREEDG---HTHQWTVYVKPYRNEDMSAYVKKIQFKLH 71
Query: 69 ETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYINPETKE 128
E+Y NP+RV+ PP+E+TETGWGEFEI IKI+F D NE+ + YH L+L
Sbjct: 72 ESYGNPLRVVTKPPYEITETGWGEFEIIIKIFFID-PNERPVTLYHLLKLF--------- 121
Query: 129 IERSNDESEVPEDEVKAVYFDEIVFNEPVEQFFQLLMSKPGNLFPSNKTPTCVFSRQLEQ 188
+S+ + + + V + ++DE++F +P QLL + + K T +LE
Sbjct: 122 --QSDTNAMLGKKTVVSEFYDEMIFQDPTAMMQQLLTTSRQLTLGAYKHET--EFAELEV 177
Query: 189 EEIDRIHIGTKKIDKEIKVYEQKLKEAMD 217
+ +++ KK EI +++LK + +
Sbjct: 178 KTREKLEAAKKKTSFEIAELKERLKASRE 206
>CE12388 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 211
Score = 132 bits (333), Expect = 3e-31
Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 23/213 (10%)
Query: 6 VTKRIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKVVF 65
+ +R+K ++ +PI+YGNTA G + HTH WT+F++ ED + +I+KV F
Sbjct: 4 IVERMKKKNIVKPIVYGNTATPFGYKRDSD---QHTHQWTVFLKPYLIEDPTKWIRKVQF 60
Query: 66 KLHETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYINPE 125
KLHE+Y P RV+E PP+E+TETGWGEFEI I+IYF D NEK + +H+LRL
Sbjct: 61 KLHESYAVPYRVVEKPPYEVTETGWGEFEIQIRIYFVD-PNEKPITAFHYLRLF----QP 115
Query: 126 TKEIERSNDESEVPEDEVKAVYFDEIVFNEPVEQFFQLLMSKPGNLFPSNKTPTCVFSRQ 185
T E+ N V ++DEI+F EP Q ++ L + G + F
Sbjct: 116 TIELPSGN-------QIVCMEFYDEIIFQEPTVQMYKALQASDG-----KRPDKQAFLND 163
Query: 186 LEQEEIDRIHIG---TKKIDKEIKVYEQKLKEA 215
+EQ + +G K+I EI+ + LK+A
Sbjct: 164 IEQVKTRTRELGEVAQKEIAAEIEDLRESLKDA 196
>At5g45600 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 268
Score = 124 bits (310), Expect = 1e-28
Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 18/168 (10%)
Query: 8 KRIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKVVFKL 67
K++K + ++ PI+YGN A +G A + +H W ++VR EDIS +KKVVF+L
Sbjct: 37 KKLKDIEISVPIVYGNVAFWLGKK----ASEYQSHKWAVYVRGATNEDISVVVKKVVFQL 92
Query: 68 HETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYINPETK 127
H ++ +P RVIE PPFE++E+GWGEFEI + ++F +K L+ YHHL+L+P
Sbjct: 93 HSSFNSPTRVIEEPPFEVSESGWGEFEIAMTLHFHSDVCDKPLSLYHHLKLYP------- 145
Query: 128 EIERSNDESE--VPEDEVKAVYFDEIVFNEPVEQFFQLLMSKPGNLFP 173
DES + V +DEIVF +P E F + + P FP
Sbjct: 146 -----EDESGPLTMKKPVVVESYDEIVFPDPSESFLARVQNHPALTFP 188
>7297196 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 195
Score = 120 bits (302), Expect = 1e-27
Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 13/166 (7%)
Query: 9 RIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKVVFKLH 68
R+K +++ +PI+YGN A+ G + HTH W ++++ ED+S ++KKV FKLH
Sbjct: 11 RLKGVTIVKPIVYGNIARSFGKKREEDG---HTHQWKVYLKPYFNEDMSIYVKKVHFKLH 67
Query: 69 ETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRL--HPYINPET 126
E+Y NP R++ PP+E+TETGWGEFE+ IKIYF D S E+ + YH L+L P ++ E
Sbjct: 68 ESYANPNRIVVKPPYEITETGWGEFEVIIKIYFNDQS-ERPVTCYHILKLFQSPVVDGEL 126
Query: 127 KEIERSNDESEVPEDEVKAVYFDEIVFNEPVE--QFFQLLMSKPGN 170
+ + + + ++EIVF EP + Q + LL + N
Sbjct: 127 SSSTTMDTKKGLVSES-----YEEIVFQEPTQILQHYLLLSEQSAN 167
>At2g18000 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 202
Score = 107 bits (266), Expect = 2e-23
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 18/164 (10%)
Query: 8 KRIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKVVFKL 67
+RIK + V PI+ G+ A +G A + TH WT++VR ED+ IK+V+F L
Sbjct: 33 RRIKDVEVYVPIVCGSIAFYLGKK----ATEYRTHKWTVYVRGATNEDLGVVIKRVIFHL 88
Query: 68 HETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYINPETK 127
H ++ NP RV++APPF L+E GWGEF+I+I ++F EK L H L+L+P
Sbjct: 89 HPSFNNPTRVVDAPPFALSECGWGEFKIDITVFFHTDVCEKKLELSHVLKLNP------- 141
Query: 128 EIERSNDESEVPED---EVKAVYFDEIVFNEPVEQFFQLLMSKP 168
N +P+ V A ++E+VF +P E F + + P
Sbjct: 142 ----ENAYGPIPKSIKIPVVAESYNEVVFPDPFESFVARVHNHP 181
>Hs4758720 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 568
Score = 80.5 bits (197), Expect = 2e-15
Identities = 40/130 (30%), Positives = 68/130 (51%), Gaps = 17/130 (13%)
Query: 41 THLWTIFVRDPRGEDISYFIKKVVFKLHETYPNPVRVIEAPPFELTETGWGEFEINIKIY 100
TH W +FVR P +I +F++KVVF LHE++P P RV + PP+++ E+G+ F + I++Y
Sbjct: 29 THDWMVFVRGPEHSNIQHFVEKVVFHLHESFPRPKRVCKDPPYKVEESGYAGFILPIEVY 88
Query: 101 FADVSNEKMLNFYHHLRLHPYINPETKEIERSNDESEVPEDEVKAVYFDEIVFNEPVEQF 160
F + + + F + L LH +P + +++ FN P E F
Sbjct: 89 FKNKEEPRKVRFDYDLFLHLEGHPPVNHLR-----------------CEKLTFNNPTEDF 131
Query: 161 FQLLMSKPGN 170
+ L+ G+
Sbjct: 132 RRKLLKAGGD 141
>7299996 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 931
Score = 77.0 bits (188), Expect = 2e-14
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 22 GNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKVVFKLHETYPNPVRVIEAP 81
G+T+K P P+ TH W I+V+ DIS F++KVVF LHE++P P RV++ P
Sbjct: 10 GHTSKLRSKKTPH--PQAFTHDWEIYVQGVNKADISAFVEKVVFVLHESFPKPKRVVKEP 67
Query: 82 PFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYINPETKEIERSNDESEVPED 141
P+ + E+G+ F + ++IYF + K + + + L L P +E E P +
Sbjct: 68 PYAIQESGYAGFLLPVEIYFRNRDEPKRIVYQYDLVLQS-TGPPQHHVEVKTHIFEAPSE 126
Query: 142 EVK 144
E +
Sbjct: 127 EFR 129
>Hs13492977 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 345
Score = 75.1 bits (183), Expect = 7e-14
Identities = 40/103 (38%), Positives = 61/103 (58%), Gaps = 9/103 (8%)
Query: 6 VTKRIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDH---THLWTIFVRDPRGE-DISYFIK 61
+T L V + I+ GN +K IPP+ +++ TH W ++VR R E I++F+K
Sbjct: 144 LTDETSRLFVKKTIVVGNVSKY----IPPDKREENDQSTHKWMVYVRGSRREPSINHFVK 199
Query: 62 KVVFKLHETY-PNPVRVIEAPPFELTETGWGEFEINIKIYFAD 103
KV F LH +Y PN + + PPF LT GWGEF + ++++F D
Sbjct: 200 KVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKD 242
>SPAC22H12.02 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 241
Score = 72.4 bits (176), Expect = 5e-13
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 8 KRIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFV--RDPRGEDI-SYFIKKVV 64
KR L + ++ G A + D P W+I + +P+GE+ + F+ +V
Sbjct: 5 KRTVRLITDQNVLPGGEAAVLNDQSFP------VREWSIKLVCLNPQGEETDASFVDRVT 58
Query: 65 FKLHETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPY 121
+KLH T+ NP R I PPF++ E GWGEFE+ I IY+AD E Y H + Y
Sbjct: 59 YKLHPTFQNPTRTIRKPPFQIKEQGWGEFEMEIIIYYADKGGEHRFLHYLHFQQEHY 115
>HsM5174571 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 559
Score = 72.0 bits (175), Expect = 6e-13
Identities = 38/129 (29%), Positives = 66/129 (50%), Gaps = 17/129 (13%)
Query: 41 THLWTIFVRDPRGEDISYFIKKVVFKLHETYPNPVRVIEAPPFELTETGWGEFEINIKIY 100
TH W +FVR P DI +F++KVVF LH+++P P RV + PP+++ E+G+ F + I+++
Sbjct: 29 THDWMVFVRGPEQCDIQHFVEKVVFWLHDSFPKPRRVCKEPPYKVEESGYAGFIMPIEVH 88
Query: 101 FADVSNEKMLNFYHHLRLHPYINPETKEIERSNDESEVPEDEVKAVYFDEIVFNEPVEQF 160
F + + + F + L L+ NP + +++ FN P +F
Sbjct: 89 FKNKEEPRKVCFTYDLFLNLEGNPPVNHLR-----------------CEKLTFNNPTTEF 131
Query: 161 FQLLMSKPG 169
L+ G
Sbjct: 132 RYKLLRAGG 140
>Hs21361272 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 559
Score = 72.0 bits (175), Expect = 6e-13
Identities = 38/129 (29%), Positives = 66/129 (50%), Gaps = 17/129 (13%)
Query: 41 THLWTIFVRDPRGEDISYFIKKVVFKLHETYPNPVRVIEAPPFELTETGWGEFEINIKIY 100
TH W +FVR P DI +F++KVVF LH+++P P RV + PP+++ E+G+ F + I+++
Sbjct: 29 THDWMVFVRGPEQCDIQHFVEKVVFWLHDSFPKPRRVCKEPPYKVEESGYAGFIMPIEVH 88
Query: 101 FADVSNEKMLNFYHHLRLHPYINPETKEIERSNDESEVPEDEVKAVYFDEIVFNEPVEQF 160
F + + + F + L L+ NP + +++ FN P +F
Sbjct: 89 FKNKEEPRKVCFTYDLFLNLEGNPPVNHLR-----------------CEKLTFNNPTTEF 131
Query: 161 FQLLMSKPG 169
L+ G
Sbjct: 132 RYKLLRAGG 140
>CE24095 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 266
Score = 67.8 bits (164), Expect = 1e-11
Identities = 41/126 (32%), Positives = 66/126 (51%), Gaps = 11/126 (8%)
Query: 19 IIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYF-----IKKVVFKLHETYPN 73
+I G+++ ++ P N HTH WT+FV+ P D F I+KV F++HE++
Sbjct: 3 VIVGHSSTRL----PENNENGHTHKWTLFVK-PGNRDYDEFPDNKLIQKVKFEIHESFAQ 57
Query: 74 PVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYINPETKEIERSN 133
PVR + PPF++TETG+ F + I F ++ NEK + L L E ++
Sbjct: 58 PVRFVTKPPFKITETGFASFTTLVTI-FLNLPNEKPRTIPYELTLFTGDQDVQLETQKLV 116
Query: 134 DESEVP 139
+ +VP
Sbjct: 117 VQKDVP 122
>ECU03g1600 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 157
Score = 60.8 bits (146), Expect = 1e-09
Identities = 39/101 (38%), Positives = 55/101 (53%), Gaps = 11/101 (10%)
Query: 19 IIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKVVFKLHETYPNPVRVI 78
++ GN A+ + + + TH W +VR P +KKV FKLHE++ N + V
Sbjct: 15 VVIGNEARMIPEE--ERVIPELTHEWKAYVRAPLE-----IVKKVEFKLHESFSNRL-VS 66
Query: 79 EAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLH 119
PFE+ E GWGEF I IKI+ + EK+L H L+LH
Sbjct: 67 SEHPFEVVERGWGEFSIQIKIFL--FNGEKVLT-SHFLQLH 104
>7297417 [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 969
Score = 60.8 bits (146), Expect = 1e-09
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 20 IYGNTAKKMGDNIPPNAPKDH--THLWTIFVRDPR-GEDISYFIKKVVFKLHETY-PNPV 75
+ GNT+K +G++ N + T+ W ++V+ E + +IKKV F LH +Y PN +
Sbjct: 252 VVGNTSKYIGEDSRENGTGGNALTYKWLVYVQGKDLPEPLEKYIKKVRFHLHPSYRPNDI 311
Query: 76 RVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYH 114
+ PF+L GWGEF + I+++F + +K + H
Sbjct: 312 VDVHRSPFQLNRHGWGEFPMRIQLFFQEHLQQKPVQLMH 350
>YPL129w [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 244
Score = 51.6 bits (122), Expect = 8e-07
Identities = 23/66 (34%), Positives = 38/66 (56%), Gaps = 1/66 (1%)
Query: 46 IFVRDPRGEDISYFI-KKVVFKLHETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADV 104
I + D G++I I KV++ LH T+ NP R PPF + E GWG F ++I ++ +
Sbjct: 36 IVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFLLEK 95
Query: 105 SNEKML 110
+ E+ +
Sbjct: 96 AGERKI 101
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,240,426
Number of Sequences: 60738
Number of extensions: 710639
Number of successful extensions: 1975
Number of sequences better than 1.0e-05: 17
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1944
Number of HSP's gapped (non-prelim): 18
length of query: 220
length of database: 30,389,216
effective HSP length: 102
effective length of query: 118
effective length of database: 24,193,940
effective search space: 2854884920
effective search space used: 2854884920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)