ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6347 good R KOG4208 General function prediction only Nucleolar RNA-binding protein NIFK
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6347 2210563 2211498 312
(312 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL110c [R] KOG4208 Nucleolar RNA-binding protein NIFK 215 8e-56
SPCC1827.05c [R] KOG4208 Nucleolar RNA-binding protein NIFK 103 3e-22
At5g04600 [R] KOG4208 Nucleolar RNA-binding protein NIFK 98 2e-20
7300883 [R] KOG4208 Nucleolar RNA-binding protein NIFK 81 2e-15
HsM14150225 [R] KOG4208 Nucleolar RNA-binding protein NIFK 79 1e-14
Hs21314753 [R] KOG4208 Nucleolar RNA-binding protein NIFK 79 1e-14
CE01075 [R] KOG4208 Nucleolar RNA-binding protein NIFK 70 5e-12
Hs20483634 [R] KOG4208 Nucleolar RNA-binding protein NIFK 60 4e-09
At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 57 3e-08
7300034 [R] KOG0118 FOG: RRM domain 57 3e-08
CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 56 8e-08
Hs20471840_1 [R] KOG4208 Nucleolar RNA-binding protein NIFK 55 2e-07
At5g58790_2 [R] KOG0126 Predicted RNA-binding protein (RRM super... 54 2e-07
SPBC887.05c [R] KOG0126 Predicted RNA-binding protein (RRM super... 54 4e-07
7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 54 4e-07
At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protei... 53 5e-07
At3g10400 [R] KOG0118 FOG: RRM domain 53 6e-07
At3g08000 [R] KOG0118 FOG: RRM domain 53 6e-07
7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 53 6e-07
Hs22056495 [R] KOG4208 Nucleolar RNA-binding protein NIFK 52 8e-07
Hs20545580 [R] KOG0126 Predicted RNA-binding protein (RRM superf... 52 8e-07
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 52 8e-07
CE18963 [R] KOG0110 RNA-binding protein (RRM superfamily) 52 1e-06
Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 52 1e-06
At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superf... 52 1e-06
At1g55310 [R] KOG0118 FOG: RRM domain 52 1e-06
7303943 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superf... 52 1e-06
SPBC18H10.03 [J] KOG0122 Translation initiation factor 3 subunit... 51 2e-06
SPAC19A8.13 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM ... 51 2e-06
HsM14916449 [R] KOG0118 FOG: RRM domain 51 2e-06
Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 51 2e-06
Hs22047457 [R] KOG4208 Nucleolar RNA-binding protein NIFK 51 2e-06
Hs21314767 [R] KOG0118 FOG: RRM domain 51 2e-06
CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 51 2e-06
CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 51 2e-06
At3g13570 [R] KOG0118 FOG: RRM domain 51 2e-06
At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 51 2e-06
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 50 4e-06
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 50 4e-06
Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfam... 50 5e-06
7290149 [R] KOG0118 FOG: RRM domain 49 7e-06
At4g20030 [R] KOG0118 FOG: RRM domain 49 9e-06
>YNL110c [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 220
Score = 215 bits (547), Expect = 8e-56
Identities = 120/251 (47%), Positives = 149/251 (58%), Gaps = 34/251 (13%)
Query: 65 MVKSLKSNPTRQAKKDQPKASKK-QVKETKALE--SEDLEAVSESDESDIEGFQXXXXXX 121
MVKS T++ QP K Q KE ALE S + E DE +IEG
Sbjct: 1 MVKSTSKTSTKETVTKQPTEEKPIQEKEELALETSSSSSDEEDEKDEDEIEGLAASDDE- 59
Query: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXLKQGSHTIKKLDPKKQXXXXXXXXXXXXXXXL 181
+ G+H IK+L+PKKQ
Sbjct: 60 -----------------------------QSGTHKIKRLNPKKQANEKKSKDKKTLEEY- 89
Query: 182 SGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQ 241
SGI+Y+SRLP GF E+ELSKYF+QFGDLK+VRLARNKKTGNSRHY FLE++NK+DA++AQ
Sbjct: 90 SGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQ 149
Query: 242 ESMNNYLLMGHLLKVKVLPNGSSIDKLFRYKKKPFVTSKVTKSSAQLKKTADEKHEERIA 301
ESMNNYLLMGHLL+V+VLP G+ I+KL++YKK+ V +TK QLK +KHEERI
Sbjct: 150 ESMNNYLLMGHLLQVRVLPKGAKIEKLYKYKKRVLVEKGITKPVKQLKDNMKQKHEERIK 209
Query: 302 KLKDAGIDFKW 312
KL +GI+FKW
Sbjct: 210 KLAKSGIEFKW 220
>SPCC1827.05c [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 276
Score = 103 bits (257), Expect = 3e-22
Identities = 76/260 (29%), Positives = 122/260 (46%), Gaps = 37/260 (14%)
Query: 68 SLKSNPTRQAKK--DQPKASKKQVKETKALESEDLEAVSESDESDIEG----FQXXXXXX 121
S +P + +KK +QPK+ ++ K A ++E + D SD EG F
Sbjct: 2 SKAKSPIKSSKKSVNQPKSVLREKKVKDAEKAEHISLQGHVDNSDEEGQDKEFFPGFGSS 61
Query: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXLKQGSHTIKKLDPKKQXXXXXXXXXXXXXXXL 181
+K+ K L KK
Sbjct: 62 DDDEEDSPNALVNTSRQIMDLGEDAEKTIKKKVSENKNLQKKK----------------- 104
Query: 182 SGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQ 241
G+LY+ RLP GF E+++ YFSQFG + ++R++RN+KTG+S+HYAF+E+ + D A V
Sbjct: 105 -GVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVA 163
Query: 242 ESMNNYLLMGHLLKVKVLPNGSSIDKLFR-----YKKKPFVT-SKVTKSSAQLKKTADE- 294
E+M+NYLL G LL+ KV+P + +F+ +K+ P T +++ K+ AD+
Sbjct: 164 ETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQHEKPLSKEKADKL 223
Query: 295 --KHEERI----AKLKDAGI 308
+H ++ KLK+ GI
Sbjct: 224 ITRHNRKLKLKKRKLKELGI 243
>At5g04600 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 222
Score = 97.8 bits (242), Expect = 2e-20
Identities = 52/141 (36%), Positives = 88/141 (61%), Gaps = 13/141 (9%)
Query: 184 ILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQES 243
+LYI R+P GF E E+ +FSQFG +K+VR+ARNKKTG S+H+ F+++ + + A +A +
Sbjct: 61 VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120
Query: 244 MNNYLLMGHLLKVKVLPNGSSIDKLFRYKK---KPFVTSKVTKSSAQLKKTADE------ 294
MN+YLLM H+LKV V+ + L+R K KP + ++ + ++T +E
Sbjct: 121 MNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQ 180
Query: 295 ----KHEERIAKLKDAGIDFK 311
K ++R +++ AGI+++
Sbjct: 181 KIVKKDQKRRKRIEAAGIEYE 201
>7300883 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 356
Score = 81.3 bits (199), Expect = 2e-15
Identities = 51/151 (33%), Positives = 78/151 (50%), Gaps = 23/151 (15%)
Query: 183 GILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQE 242
G++ + LP GF E++L +YF QFG + +VRLAR+ +TGNS+ YAF+E+ + A VA +
Sbjct: 51 GVVIVKHLPHGFFEQQLRQYFRQFGRVLRVRLARSLRTGNSKGYAFVEFEYPEVAKVAAD 110
Query: 243 SMNNYLLMGHLLKVKVLPNGSSIDKLFRYKKKPFVT-----------SKVTKSSAQLKKT 291
+M+NYL+ ++K +P FR K V +K T+ S + +
Sbjct: 111 TMDNYLMFQKVVKATYIPPEKQTLNFFRTSLKKVVNKAGKEIYVSDLTKATQRSVKKQNN 170
Query: 292 ADE------------KHEERIAKLKDAGIDF 310
DE K ++ K KD GIDF
Sbjct: 171 WDESACQKRTVANLNKIKKLQEKYKDLGIDF 201
>HsM14150225 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 293
Score = 78.6 bits (192), Expect = 1e-14
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 11/139 (7%)
Query: 183 GILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQE 242
G++Y+ LP E ++ YFSQFG + + RL+R+K+TGNS+ YAF+E+ ++D A + E
Sbjct: 45 GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 104
Query: 243 SMNNYLLMGHLLKVKVLPNGSSIDKLFRYKKKPF------VTSKVTKSSAQLKKTADE-- 294
+MNNYL LL+ +P +LF+ PF + ++ +K E
Sbjct: 105 TMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEER 164
Query: 295 -KHEERI--AKLKDAGIDF 310
K +ER+ KL GID+
Sbjct: 165 FKKKERLLRKKLAKKGIDY 183
>Hs21314753 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 293
Score = 78.6 bits (192), Expect = 1e-14
Identities = 48/139 (34%), Positives = 73/139 (51%), Gaps = 11/139 (7%)
Query: 183 GILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQE 242
G++Y+ LP E ++ YFSQFG + + RL+R+K+TGNS+ YAF+E+ ++D A + E
Sbjct: 45 GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 104
Query: 243 SMNNYLLMGHLLKVKVLPNGSSIDKLFRYKKKPFVT---SKVTKSSAQLKKTADEKHEER 299
+MNNYL LL+ +P +LF+ PF V + + T + EER
Sbjct: 105 TMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYQSVKRYNRNRTLTQKLRMEER 164
Query: 300 I--------AKLKDAGIDF 310
KL GID+
Sbjct: 165 FKKKERLLRKKLAKKGIDY 183
>CE01075 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 307
Score = 69.7 bits (169), Expect = 5e-12
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 184 ILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQES 243
++ I R+P GF E+EL YF QFG++ ++R+ARN++TGN + +A++ + NK A +A ES
Sbjct: 33 VVKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAES 92
Query: 244 MNNYLLMGHLLKVKVL 259
MN YL+ L V+
Sbjct: 93 MNGYLMFEQRLGCTVM 108
>Hs20483634 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 208
Score = 60.1 bits (144), Expect = 4e-09
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 183 GILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQE 242
G++Y+ L E ++ Y SQ G + RL+R K+TGNS+ YA +EY ++D A + E
Sbjct: 49 GVVYVCHLHNLLNETQILSYSSQCGTVTSFRLSRQKRTGNSKGYACVEYESEDVAKIVAE 108
Query: 243 SMNNYL 248
+MNNYL
Sbjct: 109 TMNNYL 114
>At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 352
Score = 57.0 bits (136), Expect = 3e-08
Identities = 26/75 (34%), Positives = 46/75 (60%)
Query: 182 SGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQ 241
S +Y+ +P E +L FSQ+G++ V L R+K TG S+ +AFL Y ++ ++A
Sbjct: 35 SAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 242 ESMNNYLLMGHLLKV 256
+++N L++G +KV
Sbjct: 95 DNLNGALVLGRTIKV 109
>7300034 [R] KOG0118 FOG: RRM domain
Length = 251
Score = 57.0 bits (136), Expect = 3e-08
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
L ++ LPQ E EL + FS+FG++++ ++ R+++TG S Y F++Y+++ A A M
Sbjct: 43 LILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNGM 102
Query: 245 NNYLLMGHLLKV 256
+ Y G LKV
Sbjct: 103 DGYETRGKRLKV 114
>CE00983 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 456
Score = 55.8 bits (133), Expect = 8e-08
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
L I+ LPQG + E+ F+ G+++ +L R+K TG S Y F+ Y+ ++DA+ A S
Sbjct: 44 LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSF 103
Query: 245 NNYLLMGHLLKV 256
N L +KV
Sbjct: 104 NGLRLQNKTIKV 115
>Hs20471840_1 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 117
Score = 54.7 bits (130), Expect = 2e-07
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 195 KERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESMNNYLLMGHLL 254
++ EL K +Q + + RL+R K+TGNS+ YAF+E+ ++D A + E+MN+YL LL
Sbjct: 18 EDAELQKEVAQCDTVTRFRLSRKKRTGNSKGYAFVEFESEDVAKIVTETMNSYLFGERLL 77
Query: 255 KVKVLPNGSSIDKL 268
+ +P ++ +
Sbjct: 78 ECHFMPPEKKMESI 91
>At5g58790_2 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 161
Score = 54.3 bits (129), Expect = 2e-07
Identities = 24/76 (31%), Positives = 46/76 (59%)
Query: 182 SGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQ 241
S +Y+ LP E +L FSQ+G++ + L R+K TG S+ +AF+ Y ++ +A
Sbjct: 29 SAYVYVGELPYDLTEGDLLAVFSQYGEVVDLNLVRDKGTGRSKRFAFVAYEDQRSTNLAV 88
Query: 242 ESMNNYLLMGHLLKVK 257
+++N ++G ++KV+
Sbjct: 89 DNINGAKVLGRIIKVE 104
>SPBC887.05c [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 217
Score = 53.5 bits (127), Expect = 4e-07
Identities = 26/75 (34%), Positives = 45/75 (59%)
Query: 182 SGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQ 241
S +YI L E ++ FS+FG+ + L R+K+TG S+ +AFL+Y ++ V+A
Sbjct: 30 SAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
Query: 242 ESMNNYLLMGHLLKV 256
++M N L+ L++V
Sbjct: 90 DNMTNVKLLDRLVRV 104
>7295878 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 673
Score = 53.5 bits (127), Expect = 4e-07
Identities = 27/82 (32%), Positives = 45/82 (53%), Gaps = 1/82 (1%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
L ++ LPQ + E+ F FG+++ +L R+K TG S Y F+ Y+ ++DA A ++
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 245 NNYLLMGHLLKVKVL-PNGSSI 265
N L +KV + P+ SI
Sbjct: 172 NGLRLQNKTIKVSIARPSSESI 193
>At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
Length = 244
Score = 53.1 bits (126), Expect = 5e-07
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 181 LSGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVA 240
+S LYI L G E L FS F + + R+ NK TG SR Y F+ +I++D A A
Sbjct: 61 MSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSA 120
Query: 241 QESMNNYLLMGHLLKVKVLPNGSSI 265
+MN L G + V V + S+
Sbjct: 121 ISAMNGQELNGFNISVNVAKDWPSL 145
>At3g10400 [R] KOG0118 FOG: RRM domain
Length = 261
Score = 52.8 bits (125), Expect = 6e-07
Identities = 30/112 (26%), Positives = 54/112 (47%), Gaps = 8/112 (7%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
LY+S L ++ FS FG + +V + +++ T SR AF+ Y++++DA A SM
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 245 NNYLLMGHLLKVKVLPNGSSIDKLFRYKKKPFVTSKVTKSSAQLKKTADEKH 296
+ +L G L V + + + F+ +V K ++ + DE H
Sbjct: 119 DAKILNGRKLTVSIAADNG--------RASEFIKKRVYKDKSRCYECGDEGH 162
>At3g08000 [R] KOG0118 FOG: RRM domain
Length = 143
Score = 52.8 bits (125), Expect = 6e-07
Identities = 31/109 (28%), Positives = 58/109 (52%), Gaps = 8/109 (7%)
Query: 182 SGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQ 241
S L+I L E+ L FS FG++ +VR+A +K +G SR + F+++ + DA+ A+
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99
Query: 242 ESMNNYLLMGHLLKVKVLPNGSSIDKLFRYKKKPFVTSKVTKSSAQLKK 290
++M+ L+G L++ L R + P V ++ KS + ++
Sbjct: 100 DAMDGKGLLGRPLRISF--------ALERVRGGPVVVPRLGKSKRERER 140
>7292822 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 168
Score = 52.8 bits (125), Expect = 6e-07
Identities = 27/82 (32%), Positives = 44/82 (52%), Gaps = 1/82 (1%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
L ++ LPQ + E+ FS G+L+ +L R+K +G S Y F+ Y+ +DA A ++
Sbjct: 28 LIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGQSLGYGFVNYVRAEDAEKAVNTL 87
Query: 245 NNYLLMGHLLKVK-VLPNGSSI 265
N L ++KV P+ SI
Sbjct: 88 NGLRLQNKVIKVSYARPSSESI 109
>Hs22056495 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 1030
Score = 52.4 bits (124), Expect = 8e-07
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 205 QFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESMNNYLLMGHLLKVKVLP 260
Q G + + RL+R K+TGNS+ YAF+E+ ++D A + E+MNNY+ LL+ +P
Sbjct: 26 QCGTVTRFRLSRKKRTGNSKGYAFVEFESEDVAKIVAETMNNYMFGERLLESHFMP 81
>Hs20545580 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 272
Score = 52.4 bits (124), Expect = 8e-07
Identities = 33/127 (25%), Positives = 61/127 (47%), Gaps = 11/127 (8%)
Query: 182 SGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQ 241
S +++ LP E ++ FSQ+G++ + L R+KKTG S+ + FL Y ++ ++A
Sbjct: 35 SAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAV 94
Query: 242 ESMNNYLLMGHLLKV------KVLPNGSSIDKLFRYKKK-----PFVTSKVTKSSAQLKK 290
++ N + G ++V + N +D + +K +SK SS+ K
Sbjct: 95 DNFNGIKIKGRTIRVDHVSNYRAPKNSEEMDDATKELQKGSCGPHTYSSKQPSSSSPTSK 154
Query: 291 TADEKHE 297
T EK +
Sbjct: 155 TVKEKDD 161
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 52.4 bits (124), Expect = 8e-07
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
LY+ L E L F FG + ++L + +TG S+ Y F+ Y N DDA A E +
Sbjct: 337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQL 396
Query: 245 NNYLLMGHLLKV 256
N + L G L+KV
Sbjct: 397 NGFELAGRLMKV 408
>CE18963 [R] KOG0110 RNA-binding protein (RRM superfamily)
Length = 872
Score = 52.0 bits (123), Expect = 1e-06
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 19/130 (14%)
Query: 182 SGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQ 241
+G L++ LP KE +L F ++G++ +V++ +KKTG + +A +E++ + AV A
Sbjct: 278 TGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAY 337
Query: 242 ESMNNYLLMGHLLKV---------------KVLP----NGSSIDKLFRYKKKPFVTSKVT 282
+++ Y+ G ++ + +V+P N + KKK F K
Sbjct: 338 SALDGYVFKGRMMHILPGDEKRTKEGEEESEVVPDDPDNPLKAEAKKEKKKKSFKEEKDE 397
Query: 283 KSSAQLKKTA 292
+ A KTA
Sbjct: 398 QKKASAGKTA 407
>Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 51.6 bits (122), Expect = 1e-06
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
L ++ LPQ + EL F G+++ +L R+K TG S Y F+ YI+ DA A ++
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 245 NNYLLMGHLLKVK-VLPNGSSI 265
N L +KV P+ +SI
Sbjct: 101 NGLRLQTKTIKVSYARPSSASI 122
>At1g71770 [AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)
Length = 668
Score = 51.6 bits (122), Expect = 1e-06
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
+Y+ LP+ + EL K F ++GD+ + +++ +GNSR + F+ +++ + A VA E M
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 245 NNYLLMGHLLKVKVLPNGSSIDKLFRYKKKPFVTSKVTK---SSAQLKKTADEKHEERIA 301
N L +L V S ++ R K + S+ K S+ LK D ++E++
Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 345
Query: 302 KL 303
++
Sbjct: 346 EM 347
>At1g55310 [R] KOG0118 FOG: RRM domain
Length = 220
Score = 51.6 bits (122), Expect = 1e-06
Identities = 25/72 (34%), Positives = 42/72 (57%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
L + L ++ +L K F QFG +K + L R+ TG+ R + F+++++ DA A+ M
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 245 NNYLLMGHLLKV 256
+ YLL+G L V
Sbjct: 98 DGYLLLGRELTV 109
>7303943 [R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)
Length = 165
Score = 51.6 bits (122), Expect = 1e-06
Identities = 22/73 (30%), Positives = 46/73 (62%)
Query: 184 ILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQES 243
IL+++ + + +E E+ + F +G++K + L +++TG S+ YA +EY A+ A+E+
Sbjct: 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133
Query: 244 MNNYLLMGHLLKV 256
+N +MG ++V
Sbjct: 134 LNGAEIMGQTIQV 146
>SPBC18H10.03 [J] KOG0122 Translation initiation factor 3 subunit g (eIF-3g)
Length = 282
Score = 51.2 bits (121), Expect = 2e-06
Identities = 22/66 (33%), Positives = 43/66 (64%)
Query: 182 SGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQ 241
S L ++ L +E EL F +FG +++V LA++K+TG ++ +AF+ Y ++D A+ A+
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260
Query: 242 ESMNNY 247
+ ++ Y
Sbjct: 261 DRLDGY 266
>SPAC19A8.13 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 261
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/74 (32%), Positives = 45/74 (60%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
+++SRL KE ++ + F+++G ++++R+ RNK TG S YAF+ + + D VA ++
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 245 NNYLLMGHLLKVKV 258
+L G + V V
Sbjct: 162 AGLMLNGRRIVVDV 175
>HsM14916449 [R] KOG0118 FOG: RRM domain
Length = 217
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/87 (28%), Positives = 50/87 (56%), Gaps = 1/87 (1%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
+Y+S LP +L + FS++G + +V + ++K T S+ AF+ +++KD A ++
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 245 NNYLLMGHLLKVKV-LPNGSSIDKLFR 270
NN L G ++K + + NG + + + R
Sbjct: 72 NNKQLFGRVIKASIAIDNGRAAEFIRR 98
>Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 351
Score = 51.2 bits (121), Expect = 2e-06
Identities = 33/129 (25%), Positives = 65/129 (49%), Gaps = 7/129 (5%)
Query: 182 SGILYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQ 241
S +++ LP E ++ FSQ+G++ + L R+KKTG S+ + FL Y ++ ++A
Sbjct: 35 SAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAV 94
Query: 242 ESMNNYLLMGHLLKVKVLPN------GSSIDKLFRYKKKPFVTSKVTKSSAQLKKTADEK 295
++ N + G ++V + N ID + R ++ ++ T S + + + DEK
Sbjct: 95 DNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGAR-TPSPSLSESSEDEK 153
Query: 296 HEERIAKLK 304
++ K K
Sbjct: 154 PTKKHKKDK 162
>Hs22047457 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 207
Score = 51.2 bits (121), Expect = 2e-06
Identities = 22/45 (48%), Positives = 34/45 (74%)
Query: 207 GDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESMNNYLLMG 251
G + + RL+RNK+TGNS+ YAF+E+ ++ A + E+MNNYL +G
Sbjct: 157 GTVTRFRLSRNKRTGNSKGYAFVEFESESVAEIVAETMNNYLFVG 201
>Hs21314767 [R] KOG0118 FOG: RRM domain
Length = 217
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/87 (28%), Positives = 50/87 (56%), Gaps = 1/87 (1%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
+Y+S LP +L + FS++G + +V + ++K T S+ AF+ +++KD A ++
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 245 NNYLLMGHLLKVKV-LPNGSSIDKLFR 270
NN L G ++K + + NG + + + R
Sbjct: 72 NNKQLFGRVIKASIAIDNGRAAEFIRR 98
>CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 749
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
+Y+ + +E L + F FG +K + ++ + TG+ + +AF+EY + A++AQESM
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 245 NNYLLMGHLLKV 256
N +L G LKV
Sbjct: 164 NGQMLGGRNLKV 175
>CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 339
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
+Y+ + +E L + F FG +K + ++ + TG+ + +AF+EY + A++AQESM
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 245 NNYLLMGHLLKV 256
N +L G LKV
Sbjct: 164 NGQMLGGRNLKV 175
>At3g13570 [R] KOG0118 FOG: RRM domain
Length = 262
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
L + L ++ +L + F QFG +K + L R+ TG+ R + F+++++ DA A+ M
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 245 NNYLLMGHLLKV 256
+ YLL+G L V
Sbjct: 99 DGYLLLGRELTV 110
>At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 414
Score = 51.2 bits (121), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
+++ +P E +L + + G + RL +++TG + Y F EY +++ A+ A+ ++
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 245 NNYLLMGHLLKVKVLPNGSSIDKLFRYKKKPFVTSKVTKSSAQL 288
+Y + G L+V N DK P V S+ T+S+ Q+
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTPGALGGPQVGSQFTQSNLQV 114
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 50.1 bits (118), Expect = 4e-06
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
L ++ LPQ + EL FS G+++ +L R+K G+S Y F+ Y+ DA A ++
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 245 NNYLLMGHLLKVKVLPNGSSIDK 267
N L +KV S + K
Sbjct: 82 NGLRLQSKTIKVSYARPSSEVIK 104
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 50.1 bits (118), Expect = 4e-06
Identities = 27/80 (33%), Positives = 42/80 (51%), Gaps = 2/80 (2%)
Query: 181 LSGI--LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAV 238
+SGI +Y+ P E EL +FS G + VR+ +++TG R +AF+E+ + A
Sbjct: 1 MSGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQ 60
Query: 239 VAQESMNNYLLMGHLLKVKV 258
A E MN G L+V +
Sbjct: 61 RAVEQMNGAEFNGRPLRVNL 80
>Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 380
Score = 49.7 bits (117), Expect = 5e-06
Identities = 27/82 (32%), Positives = 42/82 (50%), Gaps = 1/82 (1%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
L ++ LPQ + E F G+++ +L R+K TG S Y F+ YI+ DA A ++
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 245 NNYLLMGHLLKVK-VLPNGSSI 265
N L +KV P+ +SI
Sbjct: 108 NGLRLQTKTIKVSYARPSSASI 129
>7290149 [R] KOG0118 FOG: RRM domain
Length = 485
Score = 49.3 bits (116), Expect = 7e-06
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 185 LYISRLPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESM 244
L I+ LPQ +REL FS G + ++ R+ KTG S Y F++Y + D+ A + +
Sbjct: 95 LIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKL 154
Query: 245 NNYLLMGHLLKVK-VLPNGSSI 265
N + + LKV P G SI
Sbjct: 155 NGFYVRNKRLKVSYARPGGQSI 176
>At4g20030 [R] KOG0118 FOG: RRM domain
Length = 115
Score = 48.9 bits (115), Expect = 9e-06
Identities = 22/73 (30%), Positives = 44/73 (60%)
Query: 190 LPQGFKERELSKYFSQFGDLKQVRLARNKKTGNSRHYAFLEYINKDDAVVAQESMNNYLL 249
LP E L + FS FG++ +V+L +++ S+ YAF+++ ++DDA +A E+M+ +
Sbjct: 10 LPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMY 69
Query: 250 MGHLLKVKVLPNG 262
G ++ + + G
Sbjct: 70 NGRMIYIDIAKPG 82
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.130 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,090,857
Number of Sequences: 60738
Number of extensions: 554110
Number of successful extensions: 3164
Number of sequences better than 1.0e-05: 42
Number of HSP's better than 0.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3093
Number of HSP's gapped (non-prelim): 71
length of query: 312
length of database: 30,389,216
effective HSP length: 106
effective length of query: 206
effective length of database: 23,950,988
effective search space: 4933903528
effective search space used: 4933903528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)