ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6363 good A KOG0331 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6363 2215810 2215457 -118
(118 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL112w [A] KOG0331 ATP-dependent RNA helicase 74 4e-14
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 50 4e-07
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 49 1e-06
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 46 7e-06
CE18785 [A] KOG0331 ATP-dependent RNA helicase 46 1e-05
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 73.6 bits (179), Expect = 4e-14
Identities = 38/67 (56%), Positives = 40/67 (58%), Gaps = 1/67 (1%)
Query: 1 MPGNIEDYVHXXXXXXXXXXXXXXXXFFTEGNKSLGAALIKIMREAKQDIPEELRRYDRG 60
MPGNIEDYVH FFTE NK LGA LI IMREA Q+IP EL +YDR
Sbjct: 437 MPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYDRR 496
Query: 61 QY-GQHP 66
Y G HP
Sbjct: 497 SYGGGHP 503
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 50.4 bits (119), Expect = 4e-07
Identities = 24/64 (37%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Query: 1 MPGNIEDYVHXXXXXXXXXXXXXXXXFFTEGNKSLGAALIKIMREAKQDIPEELRRY-DR 59
+P +I+DYVH FF +GN SL L ++M+EA Q++PE L RY R
Sbjct: 495 LPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASR 554
Query: 60 GQYG 63
+G
Sbjct: 555 SSFG 558
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 48.5 bits (114), Expect = 1e-06
Identities = 23/64 (35%), Positives = 33/64 (50%), Gaps = 1/64 (1%)
Query: 1 MPGNIEDYVHXXXXXXXXXXXXXXXXFFTEGNKSLGAALIKIMREAKQDIPEELRRY-DR 59
+P +I+DYVH FF E N L +L ++M+EA Q++PE L RY R
Sbjct: 476 LPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYASR 535
Query: 60 GQYG 63
+G
Sbjct: 536 ASFG 539
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 46.2 bits (108), Expect = 7e-06
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 2 PGNIEDYVHXXXXXXXXXXXXXXXXFFTEGNKSLGAALIKIMREAKQDIP---EELRRYD 58
PGN EDYVH +FT N L+ I+ EAKQDI EE+ RY
Sbjct: 447 PGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMARYS 506
Query: 59 RGQYG 63
G G
Sbjct: 507 SGGRG 511
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 45.8 bits (107), Expect = 1e-05
Identities = 23/62 (37%), Positives = 28/62 (45%)
Query: 2 PGNIEDYVHXXXXXXXXXXXXXXXXFFTEGNKSLGAALIKIMREAKQDIPEELRRYDRGQ 61
P N EDYVH FFT N S L+K++ EAKQ +P+ LR
Sbjct: 454 PNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALRDMANRS 513
Query: 62 YG 63
YG
Sbjct: 514 YG 515
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,685,808
Number of Sequences: 60738
Number of extensions: 69821
Number of successful extensions: 171
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 5
length of query: 118
length of database: 30,389,216
effective HSP length: 94
effective length of query: 24
effective length of database: 24,679,844
effective search space: 592316256
effective search space used: 592316256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)