ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6369 check: MH A KOG0331 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6369 2218129 2216804 -442
(442 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL112w [A] KOG0331 ATP-dependent RNA helicase 680 0.0
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 542 e-154
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 496 e-140
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 488 e-138
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 483 e-136
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 464 e-130
7295314 [A] KOG0331 ATP-dependent RNA helicase 451 e-126
7296646 [A] KOG0331 ATP-dependent RNA helicase 447 e-125
7290853 [A] KOG0331 ATP-dependent RNA helicase 429 e-120
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 393 e-109
CE18785 [A] KOG0331 ATP-dependent RNA helicase 388 e-107
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 363 e-100
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 352 5e-97
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 326 4e-89
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 323 4e-88
Hs7662318 [A] KOG0334 RNA helicase 317 3e-86
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 313 3e-85
7298989 [A] KOG0336 ATP-dependent RNA helicase 310 3e-84
At1g20920 [A] KOG0334 RNA helicase 308 8e-84
7294797 [A] KOG0339 ATP-dependent RNA helicase 306 5e-83
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 304 2e-82
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 301 1e-81
7293060 [A] KOG0334 RNA helicase 298 1e-80
CE28031 [A] KOG0334 RNA helicase 294 2e-79
CE27427 [A] KOG0334 RNA helicase 294 2e-79
SPCC10H11.01 [A] KOG0334 RNA helicase 293 3e-79
CE17559 [A] KOG0339 ATP-dependent RNA helicase 274 2e-73
At3g09620 [A] KOG0334 RNA helicase 273 5e-73
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 270 2e-72
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 269 7e-72
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 265 1e-70
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 259 6e-69
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 257 3e-68
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 257 3e-68
CE22474 [A] KOG0336 ATP-dependent RNA helicase 256 6e-68
YGL078c [A] KOG0331 ATP-dependent RNA helicase 255 8e-68
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 252 9e-67
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 252 9e-67
YOR204w [A] KOG0335 ATP-dependent RNA helicase 251 2e-66
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 251 2e-66
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 251 2e-66
YPL119c [A] KOG0335 ATP-dependent RNA helicase 250 3e-66
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 248 1e-65
7299061 [A] KOG0335 ATP-dependent RNA helicase 246 4e-65
YBR237w [A] KOG0334 RNA helicase 246 6e-65
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 246 6e-65
CE28369 [A] KOG0335 ATP-dependent RNA helicase 246 6e-65
CE24451 [A] KOG0335 ATP-dependent RNA helicase 246 6e-65
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 244 2e-64
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 243 4e-64
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 241 2e-63
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 233 3e-61
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 231 2e-60
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 228 1e-59
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 228 1e-59
7296891 [A] KOG0341 DEAD-box protein abstrakt 228 2e-59
CE23832 [A] KOG0341 DEAD-box protein abstrakt 224 2e-58
7298204 [A] KOG0335 ATP-dependent RNA helicase 224 2e-58
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 202 6e-52
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 198 1e-50
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 191 2e-48
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 189 9e-48
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 182 7e-46
7290730 [A] KOG0331 ATP-dependent RNA helicase 180 4e-45
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 179 7e-45
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 178 1e-44
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 178 2e-44
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 174 2e-43
YHR065c [A] KOG0330 ATP-dependent RNA helicase 174 2e-43
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 174 3e-43
CE00337 [A] KOG0330 ATP-dependent RNA helicase 173 5e-43
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 172 9e-43
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 172 1e-42
CE25121 [A] KOG0335 ATP-dependent RNA helicase 172 1e-42
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 170 4e-42
CE07736 [A] KOG0335 ATP-dependent RNA helicase 169 6e-42
CE09012 [A] KOG0335 ATP-dependent RNA helicase 169 1e-41
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 167 3e-41
7298752 [A] KOG0330 ATP-dependent RNA helicase 166 5e-41
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 166 8e-41
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 166 8e-41
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 165 1e-40
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 164 2e-40
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 162 9e-40
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 161 2e-39
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 160 4e-39
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 159 8e-39
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 159 8e-39
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 159 8e-39
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 159 1e-38
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 159 1e-38
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 158 1e-38
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 158 1e-38
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 158 1e-38
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 158 2e-38
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 158 2e-38
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 157 3e-38
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 157 4e-38
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 156 7e-38
YDL031w [A] KOG0337 ATP-dependent RNA helicase 153 4e-37
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 152 1e-36
7304081 [A] KOG0338 ATP-dependent RNA helicase 152 1e-36
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 152 1e-36
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 150 3e-36
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 150 3e-36
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 150 5e-36
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 149 1e-35
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 148 1e-35
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 147 2e-35
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 147 3e-35
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 147 4e-35
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 146 5e-35
YLL008w [A] KOG0338 ATP-dependent RNA helicase 146 7e-35
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 145 9e-35
At5g54910 [A] KOG0343 RNA Helicase 145 1e-34
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 145 1e-34
YGL171w [A] KOG0344 ATP-dependent RNA helicase 145 2e-34
CE25231 [A] KOG0343 RNA Helicase 145 2e-34
CE27336 [A] KOG0334 RNA helicase 143 6e-34
CE03025 [A] KOG0329 ATP-dependent RNA helicase 143 6e-34
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 142 8e-34
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 142 8e-34
CE27553 [A] KOG0337 ATP-dependent RNA helicase 142 1e-33
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 141 2e-33
CE00839 [A] KOG0326 ATP-dependent RNA helicase 141 2e-33
YJL033w [A] KOG0343 RNA Helicase 140 3e-33
YHR169w [A] KOG0340 ATP-dependent RNA helicase 140 3e-33
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 140 3e-33
CE27030 [A] KOG0338 ATP-dependent RNA helicase 140 3e-33
7297629 [A] KOG0326 ATP-dependent RNA helicase 140 3e-33
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 140 4e-33
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 140 4e-33
YDL160c [A] KOG0326 ATP-dependent RNA helicase 139 8e-33
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 139 8e-33
SPAC1093.05 [A] KOG0343 RNA Helicase 137 2e-32
7303950 [A] KOG0340 ATP-dependent RNA helicase 137 3e-32
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 136 5e-32
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 136 5e-32
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 136 7e-32
CE11402 [A] KOG0334 RNA helicase 135 1e-31
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 135 2e-31
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 135 2e-31
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 134 2e-31
YOR046c [A] KOG0332 ATP-dependent RNA helicase 134 3e-31
7293369 [A] KOG0343 RNA Helicase 134 3e-31
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 134 3e-31
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 134 4e-31
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 133 6e-31
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 132 8e-31
CE29052 [A] KOG0335 ATP-dependent RNA helicase 132 8e-31
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 132 8e-31
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 132 1e-30
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 132 1e-30
7293941 [A] KOG0344 ATP-dependent RNA helicase 132 1e-30
Hs13514831 [A] KOG0343 RNA Helicase 132 1e-30
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 131 2e-30
7296990 [A] KOG0329 ATP-dependent RNA helicase 130 3e-30
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 129 7e-30
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 129 1e-29
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 127 4e-29
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 125 2e-28
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 125 2e-28
YDL084w [A] KOG0329 ATP-dependent RNA helicase 124 3e-28
Hs14251212 [K] KOG4284 DEAD box protein 124 3e-28
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 122 8e-28
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 122 1e-27
CE23814 [A] KOG0340 ATP-dependent RNA helicase 122 1e-27
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 121 2e-27
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 121 2e-27
CE26264 [A] KOG0335 ATP-dependent RNA helicase 121 2e-27
CE11190 [A] KOG0347 RNA helicase 120 4e-27
CE29051 [A] KOG0335 ATP-dependent RNA helicase 119 7e-27
At4g34910 [A] KOG0346 RNA helicase 119 7e-27
7299006 [A] KOG0345 ATP-dependent RNA helicase 119 9e-27
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 119 1e-26
SPBC4F6.07c [A] KOG0347 RNA helicase 117 3e-26
7293348 [A] KOG0348 ATP-dependent RNA helicase 117 3e-26
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 117 3e-26
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 115 1e-25
7294824 [K] KOG4284 DEAD box protein 115 1e-25
SPCC1494.06c [A] KOG0346 RNA helicase 114 2e-25
YBR142w [A] KOG0347 RNA helicase 114 4e-25
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 113 5e-25
Hs9506931 [A] KOG0346 RNA helicase 112 8e-25
ECU10g1680 [A] KOG0343 RNA Helicase 112 1e-24
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 111 2e-24
CE28485 [K] KOG4284 DEAD box protein 111 2e-24
CE27728 [A] KOG0346 RNA helicase 111 2e-24
CE03821 [A] KOG0345 ATP-dependent RNA helicase 111 2e-24
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 111 2e-24
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 111 2e-24
7296165 [A] KOG0330 ATP-dependent RNA helicase 111 2e-24
7302399 [A] KOG0347 RNA helicase 110 3e-24
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 110 5e-24
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 108 2e-23
YLR276c [A] KOG0346 RNA helicase 105 1e-22
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 105 1e-22
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 105 1e-22
7295505 [A] KOG0346 RNA helicase 105 1e-22
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 104 2e-22
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 104 3e-22
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 103 5e-22
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 102 1e-21
At3g16840 [A] KOG0347 RNA helicase 102 1e-21
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 101 3e-21
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 101 3e-21
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 101 3e-21
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 100 3e-21
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 100 6e-21
CE06239 [A] KOG0344 ATP-dependent RNA helicase 100 6e-21
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 98 2e-20
YKR024c [A] KOG0348 ATP-dependent RNA helicase 96 1e-19
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 94 3e-19
Hs9966805 [A] KOG0347 RNA helicase 93 9e-19
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 92 2e-18
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 90 8e-18
YFL002c [A] KOG0345 ATP-dependent RNA helicase 89 1e-17
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 87 6e-17
CE18221 [A] KOG0332 ATP-dependent RNA helicase 84 3e-16
CE18220 [A] KOG0332 ATP-dependent RNA helicase 84 3e-16
CE18219 [A] KOG0332 ATP-dependent RNA helicase 84 3e-16
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 80 6e-15
YGL064c [A] KOG0335 ATP-dependent RNA helicase 77 5e-14
At2g28600 [A] KOG0339 ATP-dependent RNA helicase 75 1e-13
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 72 1e-12
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 70 8e-12
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 69 1e-11
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 67 4e-11
CE27320 [A] KOG0335 ATP-dependent RNA helicase 67 7e-11
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 64 3e-10
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 64 5e-10
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 64 6e-10
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 59 1e-08
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 57 6e-08
CE15167 [A] KOG0335 ATP-dependent RNA helicase 56 1e-07
Hs17447249 [A] KOG0336 ATP-dependent RNA helicase 55 2e-07
Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune 54 4e-07
CE06825 [A] KOG0335 ATP-dependent RNA helicase 54 5e-07
Hs22045464 [A] KOG0343 RNA Helicase 53 8e-07
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 51 3e-06
CE00941 [L] KOG0352 ATP-dependent DNA helicase 51 3e-06
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 680 bits (1755), Expect = 0.0
Identities = 336/421 (79%), Positives = 362/421 (85%), Gaps = 1/421 (0%)
Query: 5 GGRDHQFNRNNMGSTHGDFRGSRGSDRNSYXXXXXXXXXXXXXXXXXXXTRV-DLVAPNW 63
GGRD Q+N+ N S GDFRG R SDRNSY + +L+ PNW
Sbjct: 4 GGRDQQYNKTNYKSRGGDFRGGRNSDRNSYNDRPQGGNYRGGFGGRSNYNQPQELIKPNW 63
Query: 64 DEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSY 123
DEELP LP FEKNFY EH V S+SE+ +FRKENEMTISGHD+PKPI +FDEAGFP Y
Sbjct: 64 DEELPKLPTFEKNFYVEHESVRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDY 123
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
VL+EVK EGF KPTGIQCQGWPMALSGRDM+G+AATGSGKTLSYCLPGIVHINAQPLL+P
Sbjct: 124 VLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAP 183
Query: 184 GDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIAT 243
GDGPIVLVLAPTRELAVQIQ ECSKFG SSRIRNTCVYGGVPKSQQIRDL RG EI+IAT
Sbjct: 184 GDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIAT 243
Query: 244 PGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 303
PGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK
Sbjct: 244 PGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 303
Query: 304 EVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKI 363
EVKQLA+DYL+DPIQVQ+GSLELSASH ITQIVEV++DFEKRDRL K+LETASQD + K
Sbjct: 304 EVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKT 363
Query: 364 IIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARG 423
+IFASTKR CD+IT YLR +GWPALAIHGDK Q ERDWVL EFR+GRSPIMVATDVAARG
Sbjct: 364 LIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARG 423
Query: 424 I 424
I
Sbjct: 424 I 424
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 542 bits (1396), Expect = e-154
Identities = 279/439 (63%), Positives = 338/439 (76%), Gaps = 28/439 (6%)
Query: 3 FGGGRDHQFNRN------NMGSTHGDFRGSRGSDRNSYXXXXXXXXXXXXXXXXXXXTRV 56
+GGG + ++R N G+++G RG RN Y
Sbjct: 25 YGGGYRNNYSRGGGRGGFNDGASYG--YDQRGQGRNFYESDGPGA--------------- 67
Query: 57 DLVAPNWDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFD 116
+LV +W E L F+K+FY+EH +V S++EV E+RKE E+ + G +VPKP+ +F+
Sbjct: 68 NLVKKDWKNE--TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFE 125
Query: 117 EAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHIN 176
EAGFP+YVL EVKQ GF PT IQ Q WPMA+SGRDM+G++ATGSGKTLSYCLP IVHIN
Sbjct: 126 EAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHIN 185
Query: 177 AQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRG 236
AQPLLSPGDGPIVLVLAPTRELAVQIQ+EC+KFG SSRIRNTCVYGGVP+ QIRDL RG
Sbjct: 186 AQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRG 245
Query: 237 VEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 296
VEI IATPGRL+DML+ KTNL+RVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT+M
Sbjct: 246 VEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVM 305
Query: 297 WSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETAS 356
+SATWPKEV++LA DYL+D IQV +GSL+L+ASH I QIVEV+ + +KR RL K +E
Sbjct: 306 FSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVL 365
Query: 357 QDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVA 416
+D+D+K++IF TKR D+IT +LR +GWPALAIHGDKAQ+ERDWVL EFR+G+SPIMVA
Sbjct: 366 KDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVA 425
Query: 417 TDVAARGI---GMLLKFNF 432
TDVA+RGI G+ FN+
Sbjct: 426 TDVASRGIDVKGITHVFNY 444
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 496 bits (1278), Expect = e-140
Identities = 239/359 (66%), Positives = 296/359 (81%), Gaps = 2/359 (0%)
Query: 66 ELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVL 125
+L L FEKNFY E P VA M+++EV E+RK E+T+ G D+PKP++SF + GFP YVL
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 126 DEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGD 185
+EVK+ GF +PT IQ QGWPMA+ GRD+IG+A TGSGKTLSY LP IVH+NAQP+L+ GD
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD 171
Query: 186 GPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPG 245
GPIVLVLAPTRELAVQIQ+E SKFG+SS+I+ TC+YGGVPK Q+RDLQ+GVEI+IATPG
Sbjct: 172 GPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
Query: 246 RLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 305
RLIDM+E TNL+RVTYLVLDEADRMLDMGF+PQIRKIV IRPDRQTL WSATWPKEV
Sbjct: 232 RLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEV 291
Query: 306 KQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIII 365
+QL+ +L++P +V IGS +L A+ I QIV+V+++ +K ++L K LE S+I++
Sbjct: 292 EQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIM--DGSRILV 349
Query: 366 FASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
F TK+ CD+IT LR +GWPAL+IHGDK+Q ERDWVL+EFRSG+SPIM ATDVAARG+
Sbjct: 350 FLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGL 408
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 488 bits (1257), Expect = e-138
Identities = 232/367 (63%), Positives = 290/367 (78%), Gaps = 2/367 (0%)
Query: 58 LVAPNWDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDE 117
LV W+ L LP FEKNFYQEHPD+A+ + EV +R+ E+T+ GH+ PKP+ +F E
Sbjct: 41 LVKKKWN--LDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYE 98
Query: 118 AGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINA 177
A FP+ V+D + ++ F +PT IQ QGWP+ALSG DM+GVA TGSGKTLSY LP IVHIN
Sbjct: 99 ANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH 158
Query: 178 QPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGV 237
QP L GDGPI LVLAPTRELA Q+Q+ +++ + R+++TC+YGG PK QIRDL+RGV
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218
Query: 238 EILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 297
EI IATPGRLID LE GKTNL+R TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278
Query: 298 SATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQ 357
SATWPKEV+QLA D+L D I + IG+LELSA+H I QIV+V D EK ++L + +E
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338
Query: 358 DQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVAT 417
++++K I+F TKR CDE+T +R +GWPA+ IHGDK+Q ERDWVL EF+ G++PI++AT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398
Query: 418 DVAARGI 424
DVA+RG+
Sbjct: 399 DVASRGL 405
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 483 bits (1242), Expect = e-136
Identities = 233/363 (64%), Positives = 288/363 (79%), Gaps = 3/363 (0%)
Query: 63 WDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDV-PKPIRSFDEAGFP 121
WD L LP FEKNFY EHP+VA+++ EV E R++ E+T+ G DV PKP+ +F A FP
Sbjct: 43 WD--LSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFP 100
Query: 122 SYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLL 181
YV+D + + F +PT IQCQG+P+ALSGRDM+G+A TGSGKTL+Y LP IVHIN QP L
Sbjct: 101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL 160
Query: 182 SPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILI 241
GDGPI LVLAPTRELA Q+Q+ +G SR+++TC+YGG PK QIRDL+RGVEI I
Sbjct: 161 ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICI 220
Query: 242 ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 301
ATPGRLID LE GKTNL+R TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW
Sbjct: 221 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 280
Query: 302 PKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDS 361
PKEV+QLA D+L D Q+ +G+LELSA+H I QIV+V + EK +L + +E ++++
Sbjct: 281 PKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKEN 340
Query: 362 KIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAA 421
K IIF TKR CD++T +R +GWPA+ IHGDK+Q ERDWVL EFRSG++PI++ATDVA+
Sbjct: 341 KTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVAS 400
Query: 422 RGI 424
RG+
Sbjct: 401 RGL 403
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 464 bits (1193), Expect = e-130
Identities = 228/356 (64%), Positives = 277/356 (77%), Gaps = 2/356 (0%)
Query: 69 NLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEV 128
NL FEKNFY E P V M+E +V +R E ++++ G DVPKP++ F +A FP +L+ +
Sbjct: 94 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 153
Query: 129 KQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI 188
+ GF +PT IQ QGWPMAL GRD+IG+A TGSGKTL+Y LP +VH++AQP L DGPI
Sbjct: 154 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 213
Query: 189 VLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLI 248
VL+LAPTRELAVQIQ+E KFG S +R+TC+YGG PK QIRDL+RGVEI+IATPGRLI
Sbjct: 214 VLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 273
Query: 249 DMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308
DMLE TNLKRVTYLVLDEADRMLDMGFEPQIRKIV QIRPDRQTL+WSATWP+EV+ L
Sbjct: 274 DMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETL 333
Query: 309 ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAS 368
A +L DP + IGS +L A+ +I Q++E++ EK +RL L+ SKI+IF
Sbjct: 334 ARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLM--DGSKILIFVE 391
Query: 369 TKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
TKR CD++T LR +GWPALAIHGDK Q+ERD VLAEF+SGRSPIM ATDVAARG+
Sbjct: 392 TKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGL 447
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 451 bits (1160), Expect = e-126
Identities = 225/362 (62%), Positives = 274/362 (75%), Gaps = 2/362 (0%)
Query: 63 WDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPS 122
W E NL F KNFY+ V + E F NE+TI G VP P F+E GFP
Sbjct: 102 WSEV--NLTPFRKNFYKPCDSVLARTVGETETFLTSNEITIKGDQVPTPSIEFEEGGFPD 159
Query: 123 YVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLS 182
YV++E++++GFAKPT IQ QGWP+A+SGRD++GVA TGSGKTL+Y LP +VHIN QP L
Sbjct: 160 YVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLE 219
Query: 183 PGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIA 242
GDGPI LVLAPTRELA QIQ+ +FG+++ +RNTC++GG PK QQ RDL+RGVEI+IA
Sbjct: 220 RGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIA 279
Query: 243 TPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 302
TPGRLID LE G T+LKR TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQ LMWSATWP
Sbjct: 280 TPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWP 339
Query: 303 KEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSK 362
KEV+QLA ++L++ IQV IGSL LSA+H I QIV+V + EK +L K L S + ++K
Sbjct: 340 KEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETK 399
Query: 363 IIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAAR 422
IIF TK+ DEIT + +GW A AIHGDK+Q ERD+VL+ FR+GR I+VATDVAAR
Sbjct: 400 TIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAAR 459
Query: 423 GI 424
G+
Sbjct: 460 GL 461
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 447 bits (1150), Expect = e-125
Identities = 226/361 (62%), Positives = 273/361 (75%), Gaps = 3/361 (0%)
Query: 66 ELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVL 125
+ NL F+KNFYQEHP+VA S EV +R+E E+T+ G VP PI+ F E P YV+
Sbjct: 93 DFSNLAPFKKNFYQEHPNVANRSPYEVQRYREEQEITVRGQ-VPNPIQDFSEVHLPDYVM 151
Query: 126 DEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGD 185
E++++G+ PT IQ QGWP+A+SG + +G+A TGSGKTL Y LP IVHIN Q L GD
Sbjct: 152 KEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGD 211
Query: 186 GPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPG 245
GPI LVLAPTRELA QIQ+ ++FG+SS +RNTCV+GG PK Q+RDLQRG EI+IATPG
Sbjct: 212 GPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPG 271
Query: 246 RLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 305
RLID L G TNLKR TYLVLDEADRMLDMGFEPQIRKIV QIRPDRQTLMWSATWPKEV
Sbjct: 272 RLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEV 331
Query: 306 KQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDS--KI 363
KQLA D+L + IQ+ IGSLELSA+H I Q+V+V +F K ++L L +S KI
Sbjct: 332 KQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKI 391
Query: 364 IIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARG 423
IIF TKR D + ++R+ G AIHGDK+Q+ERD+VL EFRSG+S I+VATDVAARG
Sbjct: 392 IIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARG 451
Query: 424 I 424
+
Sbjct: 452 L 452
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 429 bits (1102), Expect = e-120
Identities = 216/375 (57%), Positives = 277/375 (73%), Gaps = 11/375 (2%)
Query: 57 DLVAPNWDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFD 116
+LV P W+ NL F K+FY HP+ SE +V E R+E E+T+SG+++P P+ SF+
Sbjct: 185 NLVKPKWE----NLEPFLKDFYNIHPNTLAKSEQQVAEIRRELEITVSGNELPHPVVSFE 240
Query: 117 EAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHIN 176
E+ P++V++E+K++GF KPT IQ QGWP+ALSGRD++G+A TGSGKTL+Y LP IVHI
Sbjct: 241 ESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIG 300
Query: 177 AQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFG--ASSRIRNTCVYGGVPKSQQIRDLQ 234
QP + G+GPI LVLAPTRELA QIQ +G IR+TC++GG K Q RDL
Sbjct: 301 NQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLD 360
Query: 235 RGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 294
RGVE++IATPGRLID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI++QIRPDRQ
Sbjct: 361 RGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 420
Query: 295 LMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLET 354
+MWSATWPKEV+ LA D+L+D IQ+ IGS+ LSA+H I QIVE+ T+ EK RL L
Sbjct: 421 VMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNE 480
Query: 355 ASQDQDS-----KIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSG 409
S ++S KII+F TK ++I +R EG+ A +IHGDK QNERD VL +FR+G
Sbjct: 481 ISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNG 540
Query: 410 RSPIMVATDVAARGI 424
+S I++ATDVA+RG+
Sbjct: 541 KSNILIATDVASRGL 555
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 393 bits (1009), Expect = e-109
Identities = 204/379 (53%), Positives = 267/379 (69%), Gaps = 10/379 (2%)
Query: 61 PNWDEELPNL-PV-FEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEA 118
P + +P L PV F+KNFYQE +++M+ SEV FRK NEM + G +VP PI+ F+EA
Sbjct: 33 PQRYDPMPELAPVEFQKNFYQEAESISRMTPSEVSSFRKTNEMIVKGTNVPHPIQKFEEA 92
Query: 119 GFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ 178
GF S V+ + ++GF++PT IQ QGWPMALSGRDM+G+A TGSGKTLS+ LP +VH Q
Sbjct: 93 GFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALVHAKDQ 152
Query: 179 PLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVE 238
L GDGPIVLVLAPTREL +QI+K +F +R+T VYGG QIR L G E
Sbjct: 153 QPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAE 212
Query: 239 ILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 298
++IATPGRLID+ + G L RVT+LVLDEADRMLDMGFEPQ+RKI+ + +RQTLMWS
Sbjct: 213 VVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQTLMWS 272
Query: 299 ATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQD 358
ATWP+EV+ LA Y+++ IQV +G+ EL + I QIVEV + EK D+L L+ D
Sbjct: 273 ATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKGD 332
Query: 359 QDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATD 418
K+I+F + KRTCD++ L G+ A A+HGDK+QN RD VL +FRSGR PI++AT+
Sbjct: 333 ---KVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATE 389
Query: 419 VAARG-----IGMLLKFNF 432
VA RG + +++ F+F
Sbjct: 390 VAGRGLDVNDVKLVINFDF 408
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 388 bits (996), Expect = e-107
Identities = 192/363 (52%), Positives = 259/363 (70%), Gaps = 3/363 (0%)
Query: 62 NWDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFP 121
+W E NL EK+FY E+ V++ + E+ ++ N++T+ G VP+P+ F+EA P
Sbjct: 81 DWSAE--NLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLP 138
Query: 122 SYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLL 181
+ E+ F KPT IQ WP+A+SGRD+I +A TGSGKTL++ LP +VHI Q
Sbjct: 139 GQI-HELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHR 197
Query: 182 SPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILI 241
G+GP VLVL PTRELA Q+Q+ F S ++ TC++GG K Q RDL+RGV+I++
Sbjct: 198 QRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVV 257
Query: 242 ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 301
ATPGRL+D L+ G TN+K+ +YLVLDEADRMLDMGFEPQI+KI+ QIRPDRQTLM+SATW
Sbjct: 258 ATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATW 317
Query: 302 PKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDS 361
PKEV+ LASD+ D + +GSLEL+A+H ITQ+V++L + K+ +L + L ++
Sbjct: 318 PKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKEC 377
Query: 362 KIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAA 421
K IIF TKR DE+T +R +GWP L IHGDK Q ERDWVL EF++G++PIM+ATDVAA
Sbjct: 378 KTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAA 437
Query: 422 RGI 424
RG+
Sbjct: 438 RGL 440
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 363 bits (933), Expect = e-100
Identities = 191/345 (55%), Positives = 254/345 (73%), Gaps = 7/345 (2%)
Query: 82 PDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQC 141
P A SE + + +E+T+SG VP P+ SF+ GFP +L EV GF+ PT IQ
Sbjct: 127 PSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQA 186
Query: 142 QGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGD-GPIVLVLAPTRELAV 200
Q WP+A+ GRD++ +A TGSGKTL Y +PG +H+ Q + + GP +LVL+PTRELA
Sbjct: 187 QSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL--QRIRNDSRMGPTILVLSPTRELAT 244
Query: 201 QIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKR 260
QIQ+E KFG SSRI TC+YGG PK Q+RDL+RG +I++ATPGRL D+LE+ + +L++
Sbjct: 245 QIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQ 304
Query: 261 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQ 320
++YLVLDEADRMLDMGFEPQIRKIV +I RQTLM++ATWPK V+++A+D L +P QV
Sbjct: 305 ISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVN 364
Query: 321 IGSL-ELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSY 379
IG++ EL A+ +ITQ +EV+ EK+ RL + L SQ+ SK+IIF STKR CD++T
Sbjct: 365 IGNVDELVANKSITQHIEVVAPMEKQRRLEQILR--SQEPGSKVIIFCSTKRMCDQLTRN 422
Query: 380 LRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
L T + A AIHGDK+Q ERD VL +FRSGR+P++VATDVAARG+
Sbjct: 423 L-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGL 466
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 352 bits (904), Expect = 5e-97
Identities = 185/358 (51%), Positives = 252/358 (69%), Gaps = 8/358 (2%)
Query: 68 PNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDE 127
PN + +F PDV +S E+ +RK++E+T +G ++P P +F+ +G P +L E
Sbjct: 393 PNKSLVRPHFVTS-PDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRE 449
Query: 128 VKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGP 187
+ GF PT IQ Q WP+AL RD++ +A TGSGKTL Y +P + + +GP
Sbjct: 450 LLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLR-HCRNDSRNGP 508
Query: 188 IVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRL 247
VL+LAPTRELA QIQ E +FG SSRI TC+YGG PK Q+++L+RG +I++ATPGRL
Sbjct: 509 TVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRL 568
Query: 248 IDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQ 307
D+LE+ + ++V+ LVLDEADRMLDMGFEPQIRKIV++I P RQTLM++ATWPKEV++
Sbjct: 569 NDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRK 628
Query: 308 LASDYLHDPIQVQIGSL-ELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIF 366
+ASD L +P+QV IG + EL+A+ ITQ VEV+ EK RL + L SQ++ SK+IIF
Sbjct: 629 IASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILR--SQERGSKVIIF 686
Query: 367 ASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
STKR CD + + + A+ IHGDK Q ERDWVL +FRSG+S +++ATDVAARG+
Sbjct: 687 CSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGL 743
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 326 bits (836), Expect = 4e-89
Identities = 176/323 (54%), Positives = 235/323 (72%), Gaps = 12/323 (3%)
Query: 109 PKPIRSFDEAGFPSYVL-----DEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGK 163
P +R AGF SY++ V GF+ P+ IQ Q WP+A+ RD++ +A TGSGK
Sbjct: 220 PNFLRCPPAAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGK 279
Query: 164 TLSYCLPGIVHINAQPLLSPGD-GPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYG 222
TL Y +PG +H+ Q + + GP +LVL+PTRELA QIQ E KFG SS+I C+YG
Sbjct: 280 TLGYLIPGFMHL--QRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYG 337
Query: 223 GVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIR 282
G PK Q+++++RGV+I++ATPGRL D+LE+ + +L +V+YLVLDEADRMLDMGFEPQIR
Sbjct: 338 GAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIR 397
Query: 283 KIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSL-ELSASHTITQIVEVLTD 341
KIV+++ RQTLM++ATWPKEV+++A+D L +P QV IG++ EL A+ +ITQ +EVL
Sbjct: 398 KIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAP 457
Query: 342 FEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDW 401
EK RL + L SQ+ SKIIIF STKR CD++ L T + A AIHGDK+Q ERD
Sbjct: 458 MEKHSRLEQILR--SQEPGSKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDD 514
Query: 402 VLAEFRSGRSPIMVATDVAARGI 424
VL +FRSGR+P++VATDVAARG+
Sbjct: 515 VLNQFRSGRTPVLVATDVAARGL 537
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 323 bits (827), Expect = 4e-88
Identities = 167/351 (47%), Positives = 241/351 (68%), Gaps = 4/351 (1%)
Query: 75 KNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFA 134
K+FY+E ++ M+E E ++R+ + +SG DV +P+++F++ GF S ++ +K++ +
Sbjct: 190 KDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYE 249
Query: 135 KPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAP 194
KPT IQCQ P+ LSGRD+IG+A TGSGKT ++ LP IVHI QP L +GPI ++ AP
Sbjct: 250 KPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAP 309
Query: 195 TRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIG 254
TRELA QI E KF + +R + VYGG+ K +Q ++L+ G EI++ATPGRLIDML++
Sbjct: 310 TRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMK 369
Query: 255 KTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLH 314
+ R +YLVLDEADRM D+GFEPQ+R IV QIRPDRQTL++SAT P +V++LA + L
Sbjct: 370 ALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILS 429
Query: 315 DPIQVQIGSLELSASHTITQIVEVL-TDFEKRDRLAKHLETASQDQDSKIIIFASTKRTC 373
DPI+V +G + + A+ ITQ+V V+ +D EK L + L + D +++FAS K T
Sbjct: 430 DPIRVTVGEVGM-ANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGD--VLVFASKKATV 486
Query: 374 DEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
DEI + L + A+HGDK Q R L +F+SG +++ATDVAARG+
Sbjct: 487 DEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGL 537
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 317 bits (811), Expect = 3e-86
Identities = 165/357 (46%), Positives = 234/357 (65%), Gaps = 9/357 (2%)
Query: 73 FEKNFYQEHPDVAQMSESEVIEFRKENE-MTISGHDVPKPIRSFDEAGFPSYVLDEVKQE 131
F KNFY E P++A+MS+ EV FR E E +T+ G PKPI+S+ + G +L+ +K+
Sbjct: 331 FRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKH 390
Query: 132 GFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLV 191
G+ KPT IQ Q P +SGRD+IG+A TGSGKT+++ LP HI Q L G+GPI ++
Sbjct: 391 GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVI 450
Query: 192 LAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML 251
+ PTRELA+QI KEC KF + +R CVYGG S+QI +L+RG EI++ TPGR+IDML
Sbjct: 451 MTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML 510
Query: 252 EIGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308
TNL+RVTY+VLDEADRM DMGFEPQ+ +IVD +RPDRQT+M+SAT+P+ ++ L
Sbjct: 511 AANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEAL 570
Query: 309 ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDS-KIIIFA 367
A L PI+VQ+G + S Q++ + E+ + K LE Q+S +IIF
Sbjct: 571 ARRILSKPIEVQVGGRSVVCSDVEQQVIVI----EEEKKFLKLLELLGHYQESGSVIIFV 626
Query: 368 STKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ D + L +P +++HG Q +RD ++ +F++G ++VAT VAARG+
Sbjct: 627 DKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGL 683
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 313 bits (802), Expect = 3e-85
Identities = 161/365 (44%), Positives = 237/365 (64%), Gaps = 4/365 (1%)
Query: 61 PNWDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGF 120
P D + P FEKNFY EH ++ ++ ++I+ R + + +SG P+P SF GF
Sbjct: 82 PPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGF 141
Query: 121 PSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPL 180
++ ++++ + +PT IQCQG P+ALSGRDMIG+A TGSGKT ++ P ++HI Q
Sbjct: 142 DEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE 201
Query: 181 LSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEIL 240
L PGDGPI +++ PTREL QI EC +FG + +R+ VYGG +Q + LQ G EI+
Sbjct: 202 LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIV 261
Query: 241 IATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 300
+ TPGRLID ++ TNL+RV+YLV DEADRM DMGFE Q+R I +RPDRQTL++SAT
Sbjct: 262 VCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSAT 321
Query: 301 WPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVL-TDFEKRDRLAKHLETASQDQ 359
+ K++++LA D L DPI+V G + A+ +TQIVE+L + K + L + L
Sbjct: 322 FRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGPSKWNWLTRRL--VEFTS 378
Query: 360 DSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDV 419
+++F + K +E+ + L+ EG +HGD Q+ER+ V+++F+ P++VATDV
Sbjct: 379 SGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDV 438
Query: 420 AARGI 424
AARG+
Sbjct: 439 AARGL 443
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 310 bits (794), Expect = 3e-84
Identities = 169/370 (45%), Positives = 249/370 (66%), Gaps = 21/370 (5%)
Query: 71 PVFEKNFYQEHPDVAQMSESEVIEFRKEN-EMTIS----------GHDVPKPIRSFDEAG 119
P KNFY+E P+VA +++SE+ R+EN ++T+S +P P+ +F++
Sbjct: 229 PPLTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQC- 287
Query: 120 FPSY--VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINA 177
F Y +L+E+ + GF+KP+ IQ Q WP+ L G DMIG+A TG+GKTL++ LPG++H
Sbjct: 288 FAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEY 347
Query: 178 Q--PLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQR 235
Q P + G G VLVLAPTRELA+QI+ E K+ ++ CVYGG ++ QI DL+R
Sbjct: 348 QSTPRGTRG-GANVLVLAPTRELALQIEMEVKKYSFRG-MKAVCVYGGGNRNMQISDLER 405
Query: 236 GVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 295
G EI+I TPGRL D++ ++ +TYLVLDEADRMLDMGFEPQIRK++ IRPDRQT+
Sbjct: 406 GAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTI 465
Query: 296 MWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVL-TDFEKRDRLAKHLET 354
M SATWP V++LA Y+ +PIQV +GSL+L+A+H++ QI++++ D +K + + ++
Sbjct: 466 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKN 525
Query: 355 ASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIM 414
S KIIIF K D+++S L +G+ IHG++ Q +R+ +A+ +SG I+
Sbjct: 526 MS--STDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRIL 583
Query: 415 VATDVAARGI 424
VATDVA+RG+
Sbjct: 584 VATDVASRGL 593
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 308 bits (790), Expect = 8e-84
Identities = 162/356 (45%), Positives = 237/356 (66%), Gaps = 8/356 (2%)
Query: 73 FEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEG 132
F KNFY E D+++M++ EV +RKE E+ + G DVP+PI+ + + G S +LD +K+
Sbjct: 489 FRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLN 548
Query: 133 FAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVL 192
+ KP IQ Q P+ +SGRD IGVA TGSGKTL + LP + HI QP + GDGPI LV+
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 608
Query: 193 APTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML- 251
APTREL QI + KF IR VYGG +QQI +L+RG EI++ TPGR+ID+L
Sbjct: 609 APTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 668
Query: 252 -EIGK-TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLA 309
GK TNL+RVT+LV+DEADRM DMGFEPQI +I+ IRP+RQT+++SAT+P++V+ LA
Sbjct: 669 TSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLA 728
Query: 310 SDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQ-DQDSKIIIFAS 368
L+ P+++Q+G + + ITQ+VEV + DR + LE + + KI++F
Sbjct: 729 RKVLNKPVEIQVGGRSV-VNKDITQLVEVRPE---SDRFLRLLELLGEWSEKGKILVFVQ 784
Query: 369 TKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
++ CD + + +P L++HG K Q +R+ +++F++ +++AT VAARG+
Sbjct: 785 SQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGL 840
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 306 bits (783), Expect = 5e-83
Identities = 162/370 (43%), Positives = 238/370 (63%), Gaps = 5/370 (1%)
Query: 56 VDLVAPNWDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSF 115
+D + P + E+ P FEKNFY +H D+A + + +V E R+ + ++G PKP+ SF
Sbjct: 213 IDPLPPIYHSEIEYEP-FEKNFYTQHDDIAALDDEQVRELRRTLGVKVTGPSPPKPVTSF 271
Query: 116 DEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHI 175
GF ++ V++ + +PT IQ Q P ALSGRD+IG+A TGSGKT ++ P ++H+
Sbjct: 272 GHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHV 331
Query: 176 NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQR 235
Q L PGDGPI L+LAPTREL++QI E KFG + C YGG K +Q + L++
Sbjct: 332 MDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQ 391
Query: 236 GVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 295
G EI++ATPGR+IDM+++ TNL+RVT+LVLDEADRM MGFEPQ+R I + +RPDRQ L
Sbjct: 392 GAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCL 451
Query: 296 MWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTD-FEKRDRLAKHLET 354
M+SAT+ K +++LA D L DP+++ G L A+ ITQ V V + +K + L HL
Sbjct: 452 MFSATFKKRIERLARDVLSDPVRIVQGDLN-EANQDITQSVYVFPNPLQKWNWLLCHL-- 508
Query: 355 ASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIM 414
+ ++IF + K + +++ L + + L +HGD Q +R+ V+ +F+ I+
Sbjct: 509 VKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDIL 568
Query: 415 VATDVAARGI 424
VATDVAARG+
Sbjct: 569 VATDVAARGL 578
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 304 bits (778), Expect = 2e-82
Identities = 166/367 (45%), Positives = 236/367 (64%), Gaps = 16/367 (4%)
Query: 69 NLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHD--------VPKPIRSFDEAGF 120
+LP +KNFY+E + MS+ E +RKEN I+ D +P P +FD+A F
Sbjct: 190 DLPPIKKNFYKESTATSAMSKVEADSWRKEN-FNITWDDLKDGEKRPIPNPTCTFDDA-F 247
Query: 121 PSY--VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ 178
Y V++ +K+ GF KPT IQ Q WP+ L G D+IGVA TG+GKTL Y +PG +H+ Q
Sbjct: 248 QCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQ 307
Query: 179 PLLS-PGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGV 237
P L + P +LVL PTRELA+Q++ EC K+ +R+ CVYGG + +QI +L++GV
Sbjct: 308 PSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKG-LRSVCVYGGGNRDEQIEELKKGV 366
Query: 238 EILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 297
+I+IATPGRL D+ NLK +TYLVLDEAD+MLDMGFEPQI KI+ +RPDRQT+M
Sbjct: 367 DIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMT 426
Query: 298 SATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQ 357
SATWP V +LA YL +P+ V +G+L+L A ++ Q + V T+ EK + L+ S
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQ--SM 484
Query: 358 DQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVAT 417
K+I+F S K D ++S L ++HGD+ Q +R+ L F++G+ I++AT
Sbjct: 485 SSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIAT 544
Query: 418 DVAARGI 424
D+A+RG+
Sbjct: 545 DLASRGL 551
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 301 bits (771), Expect = 1e-81
Identities = 163/369 (44%), Positives = 240/369 (64%), Gaps = 16/369 (4%)
Query: 69 NLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHD--------VPKPIRSFDEAGF 120
+LP +KNFY E + MSE +VI +RKEN I+ D +PKP F +A F
Sbjct: 170 DLPPVKKNFYIESKATSCMSEMQVINWRKEN-FNITCDDLKSGEKRLIPKPTCRFKDA-F 227
Query: 121 PSY--VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ 178
Y +L + + G KPT IQ Q WP+ L G D+I VA TG+GKTLSY +PG +H+++Q
Sbjct: 228 QQYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQ 287
Query: 179 PLL-SPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGV 237
P+ +GP +LVL PTRELA+ ++ ECSK+ +++ C+YGG ++ QI D+ +GV
Sbjct: 288 PISREQRNGPGMLVLTPTRELALHVEAECSKYSYKG-LKSICIYGGRNRNGQIEDISKGV 346
Query: 238 EILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 297
+I+IATPGRL D+ NL+ +TYLV+DEAD+MLDM FEPQIRKI+ +RPDRQT+M
Sbjct: 347 DIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMT 406
Query: 298 SATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQ 357
SATWP V+QLA YL DP+ V +G+L L A +T+ Q + V T+ EKR + +E S
Sbjct: 407 SATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMS- 465
Query: 358 DQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVAT 417
+ K+I+F S K D+++S +G A ++HG+ Q++++ + +F+SG I++ T
Sbjct: 466 -PNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITT 524
Query: 418 DVAARGIGM 426
D+ +RG+ +
Sbjct: 525 DIVSRGLDL 533
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 298 bits (762), Expect = 1e-80
Identities = 155/356 (43%), Positives = 230/356 (64%), Gaps = 7/356 (1%)
Query: 73 FEKNFYQEHPDVAQMSESEVIEFRKENE-MTISGHDVPKPIRSFDEAGFPSYVLDEVKQE 131
F KNFY E P++ +M+ ++V ++R + E + + G PKPI+++ + G ++ +++
Sbjct: 469 FRKNFYVEVPELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRL 528
Query: 132 GFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLV 191
GF KPT IQCQ P +SGRD+IG+A TGSGKTL++ LP HI QP + GDG I ++
Sbjct: 529 GFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAII 588
Query: 192 LAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML 251
+APTREL +QI K+ KF S +R CVYGG S+QI +L+RG EI++ TPGR+IDML
Sbjct: 589 MAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML 648
Query: 252 EIGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308
TNL+RVTY+VLDEADRM DMGFEPQ+ +I+D +RPDRQT+M+SAT+P++++ L
Sbjct: 649 AANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEAL 708
Query: 309 ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAS 368
A L PI+V +G + + Q V +L D K +L + L + II+F
Sbjct: 709 ARRILKKPIEVIVGGRSVVCKE-VEQHVVILNDDAKFFKLLELL--GIYQEAGSIIVFVD 765
Query: 369 TKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ D + L +P +++HG Q +RD + +F+SG+ +++AT VAARG+
Sbjct: 766 KQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 821
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 294 bits (752), Expect = 2e-79
Identities = 158/357 (44%), Positives = 237/357 (66%), Gaps = 8/357 (2%)
Query: 73 FEKNFYQEHPDVAQMSESEVIEFRKE-NEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQE 131
F+KNFY E ++ +M+++EV +R+E + +T+ G D PKPI+++ + G +++ +K+
Sbjct: 263 FKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKF 322
Query: 132 GFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLV 191
++KPT IQ Q P +SGRD+IG+A TGSGKTL++ LP HI QP L GDGPI ++
Sbjct: 323 EYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVI 382
Query: 192 LAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML 251
LAPTRELA+Q KE +KF ++ C YGGV S+QI DL+RG EI++ TPGR+ID+L
Sbjct: 383 LAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVL 442
Query: 252 EIGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308
TNL+RVTYLVLDEADRM D GFEPQI K+V+ IRPD+QT+++SAT+P+ ++ L
Sbjct: 443 AANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEAL 502
Query: 309 ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAS 368
A L P+++ +G + S ITQ + + +K +L + L ++ S I+F
Sbjct: 503 ARKVLDKPVEILVGGKSVVCS-DITQNAVICAEHQKFLKLLELLGMYYEEGSS--IVFVD 559
Query: 369 TKRTCDEITSYLRTEGWPALA-IHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ D+I L G+ ++A +HG Q++RD +A+F++G ++VAT VAARG+
Sbjct: 560 KQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGL 616
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 294 bits (752), Expect = 2e-79
Identities = 158/357 (44%), Positives = 237/357 (66%), Gaps = 8/357 (2%)
Query: 73 FEKNFYQEHPDVAQMSESEVIEFRKE-NEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQE 131
F+KNFY E ++ +M+++EV +R+E + +T+ G D PKPI+++ + G +++ +K+
Sbjct: 263 FKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKF 322
Query: 132 GFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLV 191
++KPT IQ Q P +SGRD+IG+A TGSGKTL++ LP HI QP L GDGPI ++
Sbjct: 323 EYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVI 382
Query: 192 LAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML 251
LAPTRELA+Q KE +KF ++ C YGGV S+QI DL+RG EI++ TPGR+ID+L
Sbjct: 383 LAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVL 442
Query: 252 EIGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308
TNL+RVTYLVLDEADRM D GFEPQI K+V+ IRPD+QT+++SAT+P+ ++ L
Sbjct: 443 AANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEAL 502
Query: 309 ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAS 368
A L P+++ +G + S ITQ + + +K +L + L ++ S I+F
Sbjct: 503 ARKVLDKPVEILVGGKSVVCS-DITQNAVICAEHQKFLKLLELLGMYYEEGSS--IVFVD 559
Query: 369 TKRTCDEITSYLRTEGWPALA-IHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ D+I L G+ ++A +HG Q++RD +A+F++G ++VAT VAARG+
Sbjct: 560 KQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGL 616
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 293 bits (751), Expect = 3e-79
Identities = 156/366 (42%), Positives = 227/366 (61%), Gaps = 6/366 (1%)
Query: 64 DEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENE-MTISGHDVPKPIRSFDEAGFPS 122
D N F+K+FY E ++ +S +EV E R + + I G D PKP+ S+ + G +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 123 YVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLS 182
+ + G+ KPT IQ Q P SGRD+IGVA TGSGKT+++ LP HI Q L
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 183 PGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIA 242
G+GPI +++ PTRELAVQI +EC F IR C YGG P QI DL+RG EI++
Sbjct: 488 TGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVC 547
Query: 243 TPGRLIDMLEIGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 299
TPGR+ID+L TNL R TYLVLDEADRM D+GFEPQ+ +I++ IRPDRQT+++SA
Sbjct: 548 TPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSA 607
Query: 300 TWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHL-ETASQD 358
T+P+ ++ LA L P+++ +G + AS + QIVEV + K RL + L E +
Sbjct: 608 TFPRAMEALARKVLKKPVEITVGGRSVVASE-VEQIVEVRPEESKFSRLLELLGELYNNQ 666
Query: 359 QDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATD 418
D + ++F + + D + S L G+ + +IHG K Q++RD ++++++G +++AT
Sbjct: 667 LDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATS 726
Query: 419 VAARGI 424
V ARG+
Sbjct: 727 VVARGL 732
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 274 bits (701), Expect = 2e-73
Identities = 151/367 (41%), Positives = 228/367 (61%), Gaps = 8/367 (2%)
Query: 61 PNWDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGF 120
P+ D F KNFY+EH D+ ++ +VI + + + G P+P+ SF F
Sbjct: 213 PDIDHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSF 272
Query: 121 PSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPL 180
+++ +++ + +PT IQ P ALSGRD++G+A TGSGKT +Y P IVHI QP
Sbjct: 273 DKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPD 332
Query: 181 LSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ-RGVEI 239
L G+GP+ +++ PTRELA+Q+ +E KF I C YGG K +Q +LQ G E+
Sbjct: 333 LKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEM 392
Query: 240 LIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 299
++ TPGR+ID++++G TN R T+LV DEADRM DMGFE Q++ I D +RPDRQ LM+SA
Sbjct: 393 VVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLMFSA 452
Query: 300 TWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFE-KRDRLAKHL-ETASQ 357
T+ ++V++LA D L DP+++ G + A+ I Q V V+ + + K L ++L E AS
Sbjct: 453 TFKQKVERLARDALVDPVRIVQGEVG-EANADIEQKVFVMQNQDVKLHWLIRNLVEFASL 511
Query: 358 DQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVAT 417
K++IF + K +++ L+ + + + +HGD Q ER+ L +FR +S I+VAT
Sbjct: 512 ---GKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVAT 567
Query: 418 DVAARGI 424
DVAARG+
Sbjct: 568 DVAARGL 574
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 273 bits (697), Expect = 5e-73
Identities = 153/355 (43%), Positives = 220/355 (61%), Gaps = 35/355 (9%)
Query: 73 FEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEG 132
F KNFY E D+++M++ V +RKE E+ + G DVP+PI+ + + G S +LD +K+
Sbjct: 356 FRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLN 415
Query: 133 FAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVL 192
+ KP IQ Q P+ +SGRD IGVA TGSGKTL + LP + HI QP + GDGPI LV+
Sbjct: 416 YEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 475
Query: 193 APTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML- 251
APTREL QI + KF + I VYGG +QQI +L+RG EI++ TPGR+ID+L
Sbjct: 476 APTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 535
Query: 252 -EIGK-TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLA 309
GK TNL+RVTYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V+ LA
Sbjct: 536 TSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLA 595
Query: 310 SDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAST 369
L+ P+++Q+G + + ITQ+VE+ + E+ RL + L + K+++F +
Sbjct: 596 RKVLNKPVEIQVGGRSV-VNKDITQLVEIRPESERFSRLLELL--GEWYEKGKVLVFVRS 652
Query: 370 KRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ +++F+S +++AT VAARG+
Sbjct: 653 QEKS-----------------------------ISDFKSDVCNLLIATSVAARGL 678
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 270 bits (691), Expect = 2e-72
Identities = 154/377 (40%), Positives = 231/377 (60%), Gaps = 17/377 (4%)
Query: 63 WDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTI--SGHDVPKPIRSFDEAGF 120
WD + FE + + P + ++ VI F ++ I SG +VP P+ +F E
Sbjct: 108 WDRREREVNPFENDDSEPEPAFTEQ-DNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDL 166
Query: 121 PSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPL 180
+ +++ + KPT +Q P+ L GRD++ A TGSGKT ++C P I I
Sbjct: 167 GEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQH 226
Query: 181 LSPGDG-----PIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQR 235
+ G P+ ++L+PTRELA QI E KF + ++ YGG P +QQ+R+L+R
Sbjct: 227 VQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELER 286
Query: 236 GVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI----RPD 291
GV+IL+ATPGRL D+LE + +++ + +L LDEADRMLDMGFEPQIRKIV+Q+ R
Sbjct: 287 GVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGV 346
Query: 292 RQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKR----DR 347
RQTL++SAT+P+E+++LA+D+L + I + +G + S++ I Q VE + D +KR D
Sbjct: 347 RQTLLFSATFPREIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKRSHLMDL 405
Query: 348 LAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFR 407
L E Q + + ++F TKR D + ++L G+PA +IHGD+ Q ER+ L F+
Sbjct: 406 LHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFK 465
Query: 408 SGRSPIMVATDVAARGI 424
SGR+PI+VATDVAARG+
Sbjct: 466 SGRTPILVATDVAARGL 482
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 269 bits (687), Expect = 7e-72
Identities = 153/352 (43%), Positives = 226/352 (63%), Gaps = 18/352 (5%)
Query: 89 ESEVIEFRKENEMTI--SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPM 146
E+ VI F ++ I SG +VP P+ +F E + +++ + KPT +Q P+
Sbjct: 120 ENTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPI 179
Query: 147 ALSGRDMIGVAATGSGKTLSYCLP---GIV---HINAQPLLSPGDGPIVLVLAPTRELAV 200
+GRD++ A TGSGKT ++C P GI+ HI +P G P+ ++L+PTRELA
Sbjct: 180 LAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIE-RPRGVRGVYPLAVILSPTRELAC 238
Query: 201 QIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKR 260
QI E KF + ++ YGG P +QQIR+L+RGV+IL+ATPGRL D+LE G+ +L+
Sbjct: 239 QIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQM 298
Query: 261 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPD----RQTLMWSATWPKEVKQLASDYLHDP 316
V +L LDEADRMLDMGFEPQIRKIV Q+ RQT+++SAT+P+E+++LASD+L +
Sbjct: 299 VRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNY 358
Query: 317 IQVQIGSLELSASHTITQIVEVLTDFEKR----DRLAKHLETASQDQDSKIIIFASTKRT 372
I + +G + S++ I Q VE + D +KR D L E +Q + + ++F TK+
Sbjct: 359 IFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKG 417
Query: 373 CDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
D + ++L G+PA IHGD++Q ER+ L F++GR+PI+VATDVAARG+
Sbjct: 418 ADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGL 469
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 265 bits (677), Expect = 1e-70
Identities = 148/360 (41%), Positives = 224/360 (62%), Gaps = 11/360 (3%)
Query: 74 EKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKP----IRSFDEAGFPSYVLDEVK 129
EKN ++ P+ +E ++ ++ ++G V + +++F E+ P VLD K
Sbjct: 73 EKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCK 132
Query: 130 QEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDG--- 186
F KP+ IQ WP L GRD+IG+A TGSGKTL++ +P I+H+ + G
Sbjct: 133 T--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKV 190
Query: 187 -PIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPG 245
P LVL+PTRELAVQI + G +++ CVYGG K QI ++ GV+I+I TPG
Sbjct: 191 NPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPG 250
Query: 246 RLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 305
RL D++E L V+++VLDEADRMLDMGFE +R I+ RQ +M+SATWP +V
Sbjct: 251 RLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDV 310
Query: 306 KQLASDYLH-DPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKII 364
+LA +++ +PI+V IGS++L+A+H + QI+EVL + + RL LE + Q ++++
Sbjct: 311 HKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVL 370
Query: 365 IFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+FA K + + +L+ GW A++IHG+KAQ+ER L+ F+ G P++VATDVAARG+
Sbjct: 371 VFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGL 430
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 259 bits (662), Expect = 6e-69
Identities = 153/368 (41%), Positives = 220/368 (59%), Gaps = 33/368 (8%)
Query: 86 QMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWP 145
+M+E + FR++ +TI G +P PIRS++E+GFP ++D + + G+ +PT IQ Q P
Sbjct: 367 EMTERDWRIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIP 426
Query: 146 MALSGRDMIGVAATGSGKTLSYCLPGIVHINAQP----LLSPGDGPIVLVLAPTRELAVQ 201
+ L RD+IGVA TGSGKTL++ +P + I + P L GP +++APTRELA Q
Sbjct: 427 IGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQ 486
Query: 202 IQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRV 261
I++E +KFG IR V GG+ + +Q L+ G EI+IATPGRLID+LE L +
Sbjct: 487 IEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 546
Query: 262 TYLVLDEADRMLDMGFEPQIRKI-----VDQIRPD--------------------RQTLM 296
TY+VLDEADRM+DMGFEP ++KI V ++PD RQT+M
Sbjct: 547 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVM 606
Query: 297 WSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETAS 356
++AT P V++LA YL P V IGS+ T QIV ++ + +KR +L +E S
Sbjct: 607 FTATMPPAVERLARTYLRRPATVYIGSVGKPTERT-EQIVYMMGENDKRKKL---MEILS 662
Query: 357 QDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVA 416
+ D +IIF + K+ D + L G+ + +HG K Q +R++ LA +SG I+VA
Sbjct: 663 RKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVA 722
Query: 417 TDVAARGI 424
TDVA RGI
Sbjct: 723 TDVAGRGI 730
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 257 bits (656), Expect = 3e-68
Identities = 151/354 (42%), Positives = 213/354 (59%), Gaps = 28/354 (7%)
Query: 93 IEFRKENEMTI--SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG 150
I F K +++ + +G++ P I SF + ++ ++ + +PT +Q P+
Sbjct: 158 INFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK 217
Query: 151 RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDG----------------PIVLVLAP 194
RD++ A TGSGKT ++ LP + I + PG+ PI LVLAP
Sbjct: 218 RDLMACAQTGSGKTAAFLLPILSQIYSD---GPGEALRAMKENGRYGRRKQYPISLVLAP 274
Query: 195 TRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIG 254
TRELAVQI +E KF SR+R VYGG QQIRDL+RG +L+ATPGRL+DM+E G
Sbjct: 275 TRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG 334
Query: 255 KTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQ----IRPDRQTLMWSATWPKEVKQLAS 310
K L YLVLDEADRMLDMGFEPQIR+IV+Q + R T+M+SAT+PKE++ LA
Sbjct: 335 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLAR 394
Query: 311 DYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTK 370
D+L + I + +G + S S ITQ V + + +KR L L +DS ++F TK
Sbjct: 395 DFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATG--KDSLTLVFVETK 451
Query: 371 RTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ D + +L EG+ +IHGD++Q +R+ L +FRSG+SPI+VAT VAARG+
Sbjct: 452 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGL 505
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 257 bits (656), Expect = 3e-68
Identities = 156/388 (40%), Positives = 221/388 (56%), Gaps = 36/388 (9%)
Query: 59 VAPNWDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTI--SGHDVPKPIRSFD 116
V +W + LP E+ + + I F K +++ + +G + P I +F
Sbjct: 130 VEDDWSKPLPPSERLEQELFS--------GGNTGINFEKYDDIPVEATGSNCPPHIENFS 181
Query: 117 EAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHIN 176
+ ++ ++ + +PT +Q P+ RD++ A TGSGKT ++ LP + I
Sbjct: 182 DIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIY 241
Query: 177 AQPLLSPGDG----------------PIVLVLAPTRELAVQIQKECSKFGASSRIRNTCV 220
PG+ PI LVLAPTRELAVQI +E KF SR+R V
Sbjct: 242 TD---GPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298
Query: 221 YGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQ 280
YGG QQIRDL+RG +L+ATPGRL+DM+E GK L YLVLDEADRMLDMGFEPQ
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358
Query: 281 IRKIVDQ----IRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIV 336
IR+IV+Q + R T+M+SAT+PKE++ LA D+L + I + +G + S S ITQ V
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKV 417
Query: 337 EVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQ 396
+ D +KR L L + DS ++F TK+ D + +L EG+ +IHGD++Q
Sbjct: 418 VWVEDLDKRSFLLDIL--GATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 475
Query: 397 NERDWVLAEFRSGRSPIMVATDVAARGI 424
+R+ L +FRSG+SPI+VAT VAARG+
Sbjct: 476 RDREEALHQFRSGKSPILVATAVAARGL 503
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 256 bits (653), Expect = 6e-68
Identities = 144/343 (41%), Positives = 218/343 (62%), Gaps = 15/343 (4%)
Query: 91 EVIEFRKENEMTISGHDVPKPIRSFDEA-GFPSYVLDEVKQEGFAKPTGIQCQGWPMALS 149
+V FR+E+ + I P P+ SF++A G + ++ E+++ GF KP+ IQ Q WP+ LS
Sbjct: 66 KVYPFREESTVKI-----PPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLS 120
Query: 150 GRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGD------GPIVLVLAPTRELAVQIQ 203
G+D IGV+ TGSGKTL++ LP ++HI+AQ + P VLVL+PTRELA QI+
Sbjct: 121 GQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIE 180
Query: 204 KECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTY 263
E K+ + ++ C+YGG + +Q+ + GVEI+IATPGRL D+ G +L VTY
Sbjct: 181 GEVKKYSYNG-YKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTY 239
Query: 264 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGS 323
+VLDEADRMLDMGFE IR+I+ +IRPDR + SATWP+ V++L Y + + GS
Sbjct: 240 VVLDEADRMLDMGFEVAIRRILFEIRPDRLVALTSATWPEGVRKLTDKYTKEAVMAVNGS 299
Query: 324 LELSASHTITQIVEVLTDFEKRDRLAK--HLETASQDQDSKIIIFASTKRTCDEITSYLR 381
L+L++ ++TQ E + + R+ + + TA+ Q+ K+IIF +K D ++S
Sbjct: 300 LDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFC 359
Query: 382 TEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+G + +HG ++Q++R+ L RSG I+VATD+A+RGI
Sbjct: 360 MKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGI 402
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 255 bits (652), Expect = 8e-68
Identities = 148/354 (41%), Positives = 224/354 (62%), Gaps = 12/354 (3%)
Query: 77 FYQEHPDVAQMSESEVIEFRKENEMTISGH-DVP-KPIRSFDEAGFPSYVLDEVKQEGFA 134
FY + + + +S++ E+ KENE+ + D+ +P+ SFD S + E+ + F
Sbjct: 76 FYVQSEALTSLPQSDIDEYFKENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISK--FP 133
Query: 135 KPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAP 194
KPT IQ WP LSG+D++GVA TGSGKT ++ +P I H+ G VLV++P
Sbjct: 134 KPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMND---QKKRGIQVLVISP 190
Query: 195 TRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIG 254
TRELA QI ++ CVYGGVPK +Q L++ ++++ATPGRL+D+L+ G
Sbjct: 191 TRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEG 249
Query: 255 KTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI-RPDRQTLMWSATWPKEVKQLASDYL 313
+L +V YLVLDEADRML+ GFE I+ I+ + RQTLM++ATWPKEV++LAS ++
Sbjct: 250 SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFM 309
Query: 314 HDPIQVQIGSL-ELSASHTITQIVEVLTDFEKRDRLAKHLET--ASQDQDSKIIIFASTK 370
++PI+V IG+ +L+A+ ITQIVEV+ K +L + L+ + ++ K++IFA K
Sbjct: 310 NNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYK 369
Query: 371 RTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ + L+ G+ AIHGD +Q +R L EF+SG+S +++ATDVAARG+
Sbjct: 370 KEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGL 423
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 252 bits (643), Expect = 9e-67
Identities = 149/369 (40%), Positives = 214/369 (57%), Gaps = 34/369 (9%)
Query: 86 QMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWP 145
+M++ + FR++ +T G +P PIRS+ ++ P ++L+ + + G+ +PT IQ Q P
Sbjct: 364 EMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIP 423
Query: 146 MALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLS----PGDGPIVLVLAPTRELAVQ 201
+ L RD+IGVA TGSGKT ++ +P +V I P + GP ++LAPTRELA Q
Sbjct: 424 IGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQ 483
Query: 202 IQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRV 261
I++E KFG IR V GG+ + Q L+ G EI+IATPGRLID+LE L R
Sbjct: 484 IEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRC 543
Query: 262 TYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---------------------RQTL 295
TY+VLDEADRM+DMGFEP ++KI++ + +PD RQT+
Sbjct: 544 TYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTV 603
Query: 296 MWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETA 355
M++AT P V++LA YL P V IGS + Q V ++++ EKR +L LE
Sbjct: 604 MFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVFLMSESEKRKKLLAILE-- 660
Query: 356 SQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMV 415
Q D IIIF + K+ CD + L G+ A +HG K Q +R++ L+ ++G I+V
Sbjct: 661 -QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILV 719
Query: 416 ATDVAARGI 424
ATDVA RGI
Sbjct: 720 ATDVAGRGI 728
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 252 bits (643), Expect = 9e-67
Identities = 149/369 (40%), Positives = 214/369 (57%), Gaps = 34/369 (9%)
Query: 86 QMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWP 145
+M++ + FR++ +T G +P PIRS+ ++ P ++L+ + + G+ +PT IQ Q P
Sbjct: 364 EMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIP 423
Query: 146 MALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLS----PGDGPIVLVLAPTRELAVQ 201
+ L RD+IGVA TGSGKT ++ +P +V I P + GP ++LAPTRELA Q
Sbjct: 424 IGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQ 483
Query: 202 IQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRV 261
I++E KFG IR V GG+ + Q L+ G EI+IATPGRLID+LE L R
Sbjct: 484 IEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRC 543
Query: 262 TYLVLDEADRMLDMGFEPQIRKIVDQI-----RPD---------------------RQTL 295
TY+VLDEADRM+DMGFEP ++KI++ + +PD RQT+
Sbjct: 544 TYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTV 603
Query: 296 MWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETA 355
M++AT P V++LA YL P V IGS + Q V ++++ EKR +L LE
Sbjct: 604 MFTATMPPAVERLARSYLRRPAVVYIGSAG-KPHERVEQKVFLMSESEKRKKLLAILE-- 660
Query: 356 SQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMV 415
Q D IIIF + K+ CD + L G+ A +HG K Q +R++ L+ ++G I+V
Sbjct: 661 -QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILV 719
Query: 416 ATDVAARGI 424
ATDVA RGI
Sbjct: 720 ATDVAGRGI 728
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 251 bits (641), Expect = 2e-66
Identities = 150/352 (42%), Positives = 210/352 (59%), Gaps = 20/352 (5%)
Query: 89 ESEVIEFRKENEMTI--SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPM 146
+S I F +++ + SG DVP+PI F +L+ +K F KPT +Q P+
Sbjct: 116 QSSGINFDNYDDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPI 175
Query: 147 ALSGRDMIGVAATGSGKTLSYCLPGIVH-INAQPLLSPGDG---------PIVLVLAPTR 196
+GRD++ A TGSGKT + P + P P P +++APTR
Sbjct: 176 VANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTR 235
Query: 197 ELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKT 256
ELA QI E KF S ++ VYGG P Q+R+++RG ++L+ATPGRL D+LE GK
Sbjct: 236 ELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKI 295
Query: 257 NLKRVTYLVLDEADRMLDMGFEPQIRKIVD--QIRP--DRQTLMWSATWPKEVKQLASDY 312
+L V YLVLDEADRMLDMGFEPQIR IV+ + P +RQTLM+SAT+P +++ LA D+
Sbjct: 296 SLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDF 355
Query: 313 LHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRT 372
L D I + +G + S S ITQ V + E +D+ + L+ S D +IF TKR
Sbjct: 356 LSDYIFLSVGRVG-STSENITQKVLYV---ENQDKKSALLDLLSASTDGLTLIFVETKRM 411
Query: 373 CDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
D++T +L + + A AIHGD+ Q+ER+ LA FRSG + ++VAT VAARG+
Sbjct: 412 ADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGL 463
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 251 bits (640), Expect = 2e-66
Identities = 146/372 (39%), Positives = 221/372 (59%), Gaps = 35/372 (9%)
Query: 83 DVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQ 142
++++MS+ + FR++ ++I G VP+P+R+++EAGFP V VK+ G+ +PT IQ Q
Sbjct: 271 ELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQ 330
Query: 143 GWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGD----GPIVLVLAPTREL 198
P+ L RD+IGVA TGSGKT ++ LP +V I + P + + GP +++APTREL
Sbjct: 331 AIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTREL 390
Query: 199 AVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNL 258
A QI++E +KFG I+ V GG + Q L+ GVE++IATPGRL+D+LE L
Sbjct: 391 AQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLL 450
Query: 259 KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD--------------------------R 292
+ TY++LDEADRMLDMGFEP ++K+++ + PD R
Sbjct: 451 NQCTYVILDEADRMLDMGFEPDVQKVLEYM-PDTNMKKDTDEFDNEEALMKGFSTREKYR 509
Query: 293 QTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHL 352
QT+M++AT +++LA YL P V IGS + + Q+V ++ + KR +L + L
Sbjct: 510 QTVMFTATMSSAIERLARQYLRRPAVVHIGSAG-KPTERVEQVVYMVPEDRKRKKLVEVL 568
Query: 353 ETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSP 412
E+ Q IIIF + K+ D ++ L G+ +HG K Q++R++ L + G S
Sbjct: 569 ESQFQ---PPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSD 625
Query: 413 IMVATDVAARGI 424
I+VATDVA RGI
Sbjct: 626 ILVATDVAGRGI 637
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 251 bits (640), Expect = 2e-66
Identities = 146/372 (39%), Positives = 221/372 (59%), Gaps = 35/372 (9%)
Query: 83 DVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQ 142
++++MS+ + FR++ ++I G VP+P+R+++EAGFP V VK+ G+ +PT IQ Q
Sbjct: 271 ELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQ 330
Query: 143 GWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGD----GPIVLVLAPTREL 198
P+ L RD+IGVA TGSGKT ++ LP +V I + P + + GP +++APTREL
Sbjct: 331 AIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTREL 390
Query: 199 AVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNL 258
A QI++E +KFG I+ V GG + Q L+ GVE++IATPGRL+D+LE L
Sbjct: 391 AQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLL 450
Query: 259 KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD--------------------------R 292
+ TY++LDEADRMLDMGFEP ++K+++ + PD R
Sbjct: 451 NQCTYVILDEADRMLDMGFEPDVQKVLEYM-PDTNMKKDTDEFDNEEALMKGFSTREKYR 509
Query: 293 QTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHL 352
QT+M++AT +++LA YL P V IGS + + Q+V ++ + KR +L + L
Sbjct: 510 QTVMFTATMSSAIERLARQYLRRPAVVHIGSAG-KPTERVEQVVYMVPEDRKRKKLVEVL 568
Query: 353 ETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSP 412
E+ Q IIIF + K+ D ++ L G+ +HG K Q++R++ L + G S
Sbjct: 569 ESQFQ---PPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSD 625
Query: 413 IMVATDVAARGI 424
I+VATDVA RGI
Sbjct: 626 ILVATDVAGRGI 637
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 250 bits (638), Expect = 3e-66
Identities = 144/335 (42%), Positives = 199/335 (58%), Gaps = 18/335 (5%)
Query: 104 SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGK 163
SG DVP+PI F +++ +K F KPT +Q P+ GRD++ A TGSGK
Sbjct: 145 SGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGK 204
Query: 164 TLSYCLPGIVHI----------NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASS 213
T + P + AQ S P LVLAPTRELA QI +E KF S
Sbjct: 205 TGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRS 264
Query: 214 RIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML 273
+R VYGG P Q+R++ RG ++L+ATPGRL D+LE GK +L + YLVLDEADRML
Sbjct: 265 WVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRML 324
Query: 274 DMGFEPQIRKIVDQIR----PDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSAS 329
DMGFEPQIR IV++ +RQTLM+SAT+P +++ LA D+L + I + +G + S S
Sbjct: 325 DMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVG-STS 383
Query: 330 HTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALA 389
ITQ + + D +K+ L L+ S + +IF TKR D++T +L + + A A
Sbjct: 384 ENITQRILYVDDMDKKSAL---LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATA 440
Query: 390 IHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
IHGD+ Q ER+ L+ F++ + I+VAT VAARG+
Sbjct: 441 IHGDRTQAERERALSAFKANVADILVATAVAARGL 475
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 248 bits (633), Expect = 1e-65
Identities = 138/331 (41%), Positives = 210/331 (62%), Gaps = 19/331 (5%)
Query: 104 SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGK 163
SG DVP P+ +F + + +++ + +PT +Q P+ L+ RD++ A TGSGK
Sbjct: 142 SGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGK 201
Query: 164 TLSYCLP---GIV---HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRN 217
T ++C P GI+ H+ +P S P ++L+PTRELA QI E KF + ++
Sbjct: 202 TAAFCFPIISGIMKDQHVE-RPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKV 260
Query: 218 TCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGF 277
YGG P QQ+R+L+RG +IL+ATPGRL D+LE + +++ + +L LDEADRMLDMGF
Sbjct: 261 VVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGF 320
Query: 278 EPQIRKIVDQI----RPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTIT 333
EPQIRKIV+Q+ R RQT+++SAT+P ++++LA+D++ + I + +G + S++ IT
Sbjct: 321 EPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLIT 379
Query: 334 QIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGD 393
Q VE + + +KR L L + QD TKR D + ++L +PA +IHGD
Sbjct: 380 QRVEFVQESDKRSHLMDLLHAQRETQD-------KTKRGADTLENWLCMNEFPATSIHGD 432
Query: 394 KAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ Q ER+ L F++GR+PI+VATDVAARG+
Sbjct: 433 RTQQEREVALRSFKTGRTPILVATDVAARGL 463
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 246 bits (629), Expect = 4e-65
Identities = 146/352 (41%), Positives = 211/352 (59%), Gaps = 21/352 (5%)
Query: 93 IEFRKENEMTI--SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG 150
I F K ++ + +G +VP I SFD+ + + V + KPT +Q P+ ++G
Sbjct: 273 INFDKYEDIPVEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIING 332
Query: 151 RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDG----------PIVLVLAPTRELAV 200
RD++ A TGSGKT ++ +P + + + P P+ LVLAPTRELA
Sbjct: 333 RDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELAT 392
Query: 201 QIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKR 260
QI +E KF SR+R +YGG S+Q+R+L RG +++ATPGRL DM+ GK L+
Sbjct: 393 QIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLEN 452
Query: 261 VTYLVLDEADRMLDMGFEPQIRKIVDQIR----PDRQTLMWSATWPKEVKQLASDYLHDP 316
+ +LVLDEADRMLDMGFEPQIR+IV+Q+ RQTLM+SAT+PK++++LASD+L +
Sbjct: 453 IRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNY 512
Query: 317 IQVQIGSLELSASHTITQIVEVLTDFEKR----DRLAKHLETASQDQDSKIIIFASTKRT 372
I + +G + S S ITQ + + + +KR D L+ + +DS +IF TK+
Sbjct: 513 IFLAVGRVG-STSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKG 571
Query: 373 CDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
D + +L P +IHGD+ Q ER+ L FRSG PI+VAT VAARG+
Sbjct: 572 ADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGL 623
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 246 bits (627), Expect = 6e-65
Identities = 147/381 (38%), Positives = 220/381 (57%), Gaps = 24/381 (6%)
Query: 70 LPVFEKNFYQEHPDVAQMSESEVIEFRKE-NEMTISGHDVPKPIRSFDEAGFPSYVLDEV 128
L F+KNFY E V+ MSE EV E R + + I G PKP+ + + G + + +
Sbjct: 211 LEPFQKNFYIESETVSSMSEMEVEELRLSLDNIKIKGTGCPKPVTKWSQLGLSTDTMVLI 270
Query: 129 KQE-GFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ-PLLSPGDG 186
++ F T IQ Q P +SGRD+IG++ TGSGKT+SY LP + + AQ PL G
Sbjct: 271 TEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETG 330
Query: 187 PIVLVLAPTRELAVQIQKECSKFG-ASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPG 245
P+ L+LAPTRELA+QI +E +KF A + IR+ C GG +QI DL+RG EI++ATPG
Sbjct: 331 PMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPG 390
Query: 246 RLIDMLEIGKTNL---KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 302
R ID+L + L KR+T++V+DEADR+ D+GFEPQI +I+ +RPD+Q +++SAT+P
Sbjct: 391 RFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFP 450
Query: 303 KEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETAS------ 356
+++ A LH PI + I S + + + ++ EK D L + + S
Sbjct: 451 NKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEV 510
Query: 357 -----------QDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAE 405
++ D+K IIF S++ CD I+ L G AIH K ER L +
Sbjct: 511 QSENDGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEK 570
Query: 406 FRSGRSPIMVATDVAARGIGM 426
F+ ++ I++ T+V +RG+ +
Sbjct: 571 FKREKNSILLCTEVLSRGLNV 591
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 246 bits (627), Expect = 6e-65
Identities = 147/351 (41%), Positives = 206/351 (57%), Gaps = 23/351 (6%)
Query: 93 IEFRKENEMTI--SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG 150
I F K +++ + SG D+ +P+ F S++L +K G+ +PT +Q P+ SG
Sbjct: 148 INFEKYDDIPVEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSG 206
Query: 151 RDMIGVAATGSGKTLSYCLPGI-VHINAQPLLSPGDG------------PIVLVLAPTRE 197
RD++ A TGSGKT + P + + + P P D P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 198 LAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTN 257
L QI +E KF S +R VYGG QIR + +G ++L ATPGRL+D+++ G+ +
Sbjct: 267 LVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRIS 326
Query: 258 LKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR----PDRQTLMWSATWPKEVKQLASDYL 313
L + +LVLDEADRMLDMGFEPQIR IV+ +RQTLM+SAT+P++++ LA D+L
Sbjct: 327 LANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFL 386
Query: 314 HDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTC 373
D + + +G + S S ITQ V + D EKR L L T + +IF TKR
Sbjct: 387 KDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHTL--PPEGLTLIFVETKRMA 443
Query: 374 DEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
D +T YL +PA +IHGD+ Q ER+ L FRSGR+ IMVAT VA+RG+
Sbjct: 444 DTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGL 494
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 246 bits (627), Expect = 6e-65
Identities = 152/337 (45%), Positives = 206/337 (61%), Gaps = 18/337 (5%)
Query: 103 ISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSG 162
+SG VP I F+EAGF V++ V + G++KPT +Q P L+ RD++ A TGSG
Sbjct: 113 VSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSG 172
Query: 163 KTLSYCLPGIVHINA-------QPLLSPGDG---PIVLVLAPTRELAVQIQKECSKFGAS 212
KT ++ LP I HI A P + G P LVL+PTRELA+QI KE +KF
Sbjct: 173 KTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYK 232
Query: 213 SRIRNTCVYGGVPKSQ-QIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADR 271
S I+ +YGG + Q+ L+ G ILIATPGRLID++E G L YLVLDEADR
Sbjct: 233 SNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADR 292
Query: 272 MLDMGFEPQIRKIVDQIRPD---RQTLMWSATWPKEVKQLASDYLHDP-IQVQIGSLELS 327
MLDMGFEPQIRKIV Q P R T M+SAT+PKE++ LA D+L D I + +G + S
Sbjct: 293 MLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVG-S 351
Query: 328 ASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPA 387
S I Q + + + EKR L + L ++ ++ +++F TKR +E+ +L + +
Sbjct: 352 TSENIEQRLLWVNEMEKRSNLMEIL--MNEHSENLVLVFVETKRGANELAYFLNRQQIRS 409
Query: 388 LAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
++IHGD Q ER+ L FRSG+ PI+VAT VAARG+
Sbjct: 410 VSIHGDLKQIERERNLELFRSGQCPILVATAVAARGL 446
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 246 bits (627), Expect = 6e-65
Identities = 152/337 (45%), Positives = 206/337 (61%), Gaps = 18/337 (5%)
Query: 103 ISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSG 162
+SG VP I F+EAGF V++ V + G++KPT +Q P L+ RD++ A TGSG
Sbjct: 110 VSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSG 169
Query: 163 KTLSYCLPGIVHINA-------QPLLSPGDG---PIVLVLAPTRELAVQIQKECSKFGAS 212
KT ++ LP I HI A P + G P LVL+PTRELA+QI KE +KF
Sbjct: 170 KTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYK 229
Query: 213 SRIRNTCVYGGVPKSQ-QIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADR 271
S I+ +YGG + Q+ L+ G ILIATPGRLID++E G L YLVLDEADR
Sbjct: 230 SNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADR 289
Query: 272 MLDMGFEPQIRKIVDQIRPD---RQTLMWSATWPKEVKQLASDYLHDP-IQVQIGSLELS 327
MLDMGFEPQIRKIV Q P R T M+SAT+PKE++ LA D+L D I + +G + S
Sbjct: 290 MLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVG-S 348
Query: 328 ASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPA 387
S I Q + + + EKR L + L ++ ++ +++F TKR +E+ +L + +
Sbjct: 349 TSENIEQRLLWVNEMEKRSNLMEIL--MNEHSENLVLVFVETKRGANELAYFLNRQQIRS 406
Query: 388 LAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
++IHGD Q ER+ L FRSG+ PI+VAT VAARG+
Sbjct: 407 VSIHGDLKQIERERNLELFRSGQCPILVATAVAARGL 443
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 244 bits (623), Expect = 2e-64
Identities = 136/350 (38%), Positives = 209/350 (58%), Gaps = 14/350 (4%)
Query: 84 VAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQG 143
V +MS ++ RK+ +T++G D+P PI++F + FPS +L +K +G PT IQ QG
Sbjct: 68 VRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQG 127
Query: 144 WPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP---GDGPIVLVLAPTRELAV 200
P+ LSGRDMIG+A TGSGKTL + LP I+ + ++ P G+GPI LV+ P+RELA
Sbjct: 128 LPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAK 187
Query: 201 QIQKECSKFGAS------SRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIG 254
Q +F AS R+R+ GGV Q+ +++GV I++ATPGRL D+L
Sbjct: 188 QTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKK 247
Query: 255 KTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLH 314
K +L L LDEADR++D+GFE IR + D + RQTL++SAT P +++ A+ L
Sbjct: 248 KMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALV 307
Query: 315 DPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCD 374
P+ V +G + I ++ ++ K++ +L Q ++IF K D
Sbjct: 308 KPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTTPPVLIFCENKADVD 362
Query: 375 EITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+I YL +G A+AIHG K Q +RD+ ++ F++G+ ++VATDVA++G+
Sbjct: 363 DIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGL 412
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 243 bits (620), Expect = 4e-64
Identities = 132/350 (37%), Positives = 209/350 (59%), Gaps = 14/350 (4%)
Query: 84 VAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQG 143
+ +MS + RK+ + ++G D+P PI++F + FP VLD +K++G +PT IQ QG
Sbjct: 117 IRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQG 176
Query: 144 WPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP---GDGPIVLVLAPTRELAV 200
P+ L+GRDMIG+A TGSGKTL + LP I+ + ++ P G+GPI L++ P+RELA
Sbjct: 177 LPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELAR 236
Query: 201 QIQKECSKFGAS------SRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIG 254
Q + +F A +R+ GG+ Q+ ++RGV I++ATPGRL DML
Sbjct: 237 QTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 296
Query: 255 KTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLH 314
K +L YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L
Sbjct: 297 KMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALV 356
Query: 315 DPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCD 374
P+ V +G + I ++ ++ K++ +L Q ++IF K D
Sbjct: 357 KPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTSPPVLIFCENKADVD 411
Query: 375 EITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+I YL +G A+AIHG K Q +R++ ++ F++G+ ++VATDVA++G+
Sbjct: 412 DIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGL 461
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 241 bits (615), Expect = 2e-63
Identities = 138/325 (42%), Positives = 201/325 (61%), Gaps = 20/325 (6%)
Query: 111 PIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLP 170
PI FDE + + + +K + +PT IQ WP L+GRD++G+A TGSGKT+++ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 171 GIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQI 230
+ ++N L P VLV++PTRELA+Q + + + ++ VYGG PKS+Q
Sbjct: 223 ALQYLNG--LSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA 280
Query: 231 RDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
R + ++I TPGRL+D++ G + +V YLVLDEADRMLD GFE IR I+ P
Sbjct: 281 R-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHT-P 338
Query: 291 D------RQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEK 344
D RQT+ +SATWP+ V+ LA+ +L DP+++ IGS EL+AS ITQIVE+L D
Sbjct: 339 DPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRS 398
Query: 345 RDR-----LAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNER 399
++R L KHL +S +D KI+IF K+ + L + + + IHGD +Q R
Sbjct: 399 KERMLDNLLRKHL--SSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGAR 455
Query: 400 DWVLAEFRSGRSPIMVATDVAARGI 424
L +F+SG+ P++VATDVAARG+
Sbjct: 456 LQALNDFKSGKCPVLVATDVAARGL 480
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 233 bits (595), Expect = 3e-61
Identities = 140/359 (38%), Positives = 210/359 (57%), Gaps = 24/359 (6%)
Query: 86 QMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWP 145
+M+E + FR++ ++ G +P+P+RS++E+ S +L V++ G+ KP+ IQ P
Sbjct: 286 EMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIP 345
Query: 146 MALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPG---DGPIVLVLAPTRELAVQI 202
+ L RD+IG+A TGSGKT ++ LP + +I+ P +S +GP +V+APTRELA QI
Sbjct: 346 LGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQI 405
Query: 203 QKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVT 262
++E KF R T + GG +Q + +G EI+IATPGRLID LE L +
Sbjct: 406 EEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCN 465
Query: 263 YLVLDEADRMLDMGFEPQIRKIVD-----QIRPD------------RQTLMWSATWPKEV 305
Y+VLDEADRM+DMGFEPQ+ ++D ++P+ R T M+SAT P V
Sbjct: 466 YVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGV 525
Query: 306 KQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIII 365
++LA YL +P+ V IG+ + I+Q V ++ + EK RL K L+ + I+
Sbjct: 526 ERLARKYLRNPVVVTIGTAG-KTTDLISQHVIMMKESEKFFRLQKLLDELG---EKTAIV 581
Query: 366 FASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
F +TK+ CD I L G+ +HG K+Q +R+ L FR+ R ++VATDV RGI
Sbjct: 582 FVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGI 640
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 231 bits (588), Expect = 2e-60
Identities = 134/351 (38%), Positives = 202/351 (57%), Gaps = 24/351 (6%)
Query: 96 RKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIG 155
+++ ++I G D+P P+R+++EAG PS +L +K+ + +P+ IQ P+ L +D+IG
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 156 VAATGSGKTLSYCLPGIVHINAQPLLSPGD---GPIVLVLAPTRELAVQIQKECSKFGAS 212
+A TGSGKT ++ +P I+ I+ P L+ + GP +VLAPTRELA QIQ E +KF
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 213 SRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRM 272
R V GG +Q + +G I++ATPGRL+D LE L + TY+V+DEADRM
Sbjct: 352 LGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRM 411
Query: 273 LDMGFEPQIRKIVDQIRPD-------------------RQTLMWSATWPKEVKQLASDYL 313
LDMGFE + KI+ + RQT+M+SAT P V LA YL
Sbjct: 412 LDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYL 471
Query: 314 HDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTC 373
+P+ + IG++ A + Q VE+++D K+ R + + S IIIF + KR
Sbjct: 472 IEPVMLTIGNIG-QAVDRVEQRVEMISDDSKKWRRVEEI-LESNRFSPPIIIFVNLKRNI 529
Query: 374 DEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ I L GW A+ +HG K+Q +R+ + + R+ + I+VATD+A RGI
Sbjct: 530 EAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGI 580
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 228 bits (582), Expect = 1e-59
Identities = 134/350 (38%), Positives = 196/350 (55%), Gaps = 14/350 (4%)
Query: 84 VAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQG 143
V MSE RK+ + + G +P PI+SF E FP+ +L +K++G PT IQ QG
Sbjct: 152 VLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQG 211
Query: 144 WPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP---GDGPIVLVLAPTRELAV 200
P LSGRDMIG+A TGSGKTL + LP I+ Q P +GP L++ P+RELA
Sbjct: 212 IPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELAR 271
Query: 201 Q----IQKECSKF--GASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIG 254
Q ++ C +S +R GG+ +Q+ ++ GV +++ATPGRL+D+L+
Sbjct: 272 QTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKK 331
Query: 255 KTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLH 314
+L YL LDEADRM+DMGFE IR I + RQTL++SAT PK+++ A L
Sbjct: 332 MVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALV 391
Query: 315 DPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCD 374
P+ + +G ++ I ++ ++ K + +L Q ++IFA K D
Sbjct: 392 KPVTINVGRAGAASLDVIQEV-----EYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVD 446
Query: 375 EITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
I YL +G A+AIHG K Q ER + FR G+ ++VATDVA++G+
Sbjct: 447 AIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGL 496
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 228 bits (581), Expect = 1e-59
Identities = 145/438 (33%), Positives = 228/438 (51%), Gaps = 36/438 (8%)
Query: 1 MSFGGGRDHQFNRNNMGSTHGDFRGSR-----GSDRNSYXXXXXXXXXXXXXXXXXXXTR 55
+S G D +R+ GS G ++G GS +NS+
Sbjct: 189 LSGTGNGDTSQSRSGSGSERGGYKGLNEEVITGSGKNSWKSEAEGGESS----------- 237
Query: 56 VDLVAPNWDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSF 115
D P P P E + + + + + I + +SGHD P I +F
Sbjct: 238 -DTQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTIL------VEVSGHDAPPAILTF 290
Query: 116 DEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHI 175
+EA + + + + G+ K T +Q P+ L+GRD++ A TGSGKT ++ LP + H+
Sbjct: 291 EEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHM 350
Query: 176 NAQPLLSPG----DGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIR 231
+ + P +++APTREL QI E KF + +R +YGG IR
Sbjct: 351 MHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIR 410
Query: 232 DLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVD----Q 287
+ +G IL ATPGRL+D++ K LK++ YLVLDEADRMLDMGF P+++K++
Sbjct: 411 QIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMP 470
Query: 288 IRPDRQTLMWSATWPKEVKQLASDYL-HDPIQVQIGSLELSASHTITQIVEVLTDFEKRD 346
+ RQTLM+SAT+P+E+++LA+++L + + V +G + A + Q V + F KR+
Sbjct: 471 SKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG-GACRDVQQTVLQVGQFSKRE 529
Query: 347 RLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEF 406
+L + L D + ++F TK+ D I ++L E +IHGD+ Q ER+ L +F
Sbjct: 530 KLVEILRNIG---DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDF 586
Query: 407 RSGRSPIMVATDVAARGI 424
R G+ P++VAT VAARG+
Sbjct: 587 RFGKCPVLVATSVAARGL 604
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 228 bits (580), Expect = 2e-59
Identities = 136/350 (38%), Positives = 195/350 (54%), Gaps = 14/350 (4%)
Query: 84 VAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQG 143
+ +MSE E R E + + G PIRSF E FP +L+ + +G PT IQ QG
Sbjct: 148 IREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQVQG 207
Query: 144 WPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP---GDGPIVLVLAPTRELAV 200
P L+GRD+IG+A TGSGKTL + LP I+ Q P +GP L++ P+RELA
Sbjct: 208 LPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAK 267
Query: 201 QIQKECSKFG------ASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIG 254
Q + + IR+ GG+P S+ + + RGV I++ATPGRL+DML+
Sbjct: 268 QTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKK 327
Query: 255 KTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLH 314
L YL +DEADRM+DMGFE +R I + RQTL++SAT PK+++ A L
Sbjct: 328 ILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALV 387
Query: 315 DPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCD 374
P+ + +G +AS +TQ VE + K++ +L Q ++IFA K+ D
Sbjct: 388 KPVTINVGRAG-AASMNVTQQVE----YVKQEAKVVYLLDCLQKTAPPVLIFAEKKQDVD 442
Query: 375 EITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
I YL +G A+AIHG K Q ER + +R G+ ++VATDVA++G+
Sbjct: 443 CIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGL 492
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 224 bits (572), Expect = 2e-58
Identities = 140/352 (39%), Positives = 202/352 (56%), Gaps = 17/352 (4%)
Query: 84 VAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEV-KQEGFAKPTGIQCQ 142
+ + S+ + RK ++ G +P PI SF E FP +L+ + KQ+G PT IQ Q
Sbjct: 160 IRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQ 219
Query: 143 GWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP---GDGPIVLVLAPTRELA 199
G P+ALSGRDMIG+A+TGSGKT+++ LP ++ Q + P +GP L++ P+RELA
Sbjct: 220 GIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELA 279
Query: 200 VQIQK-------ECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLE 252
QI K G C+ GGVP +Q +D++ G+ I++ATPGRL DML
Sbjct: 280 RQIFDLIIEMFDALGKAGLPEMRAGLCI-GGVPIGEQAKDVRDGIHIVVATPGRLSDMLT 338
Query: 253 IGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDY 312
NL+ YLVLDEADRMLDMGFE +I+ I + RQTL++SAT P++++ A
Sbjct: 339 KKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQFFAKSA 398
Query: 313 LHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRT 372
L PI V +G +AS + Q +E + K R+ + L+ S K++IFA K
Sbjct: 399 LVKPIVVNVGRAG-AASLNVLQELEFVRSENKLVRVLECLQKTS----PKVLIFAEKKVD 453
Query: 373 CDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
D I YL +G +IHG K Q++R + FR ++VATDVA++G+
Sbjct: 454 VDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGL 505
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 224 bits (572), Expect = 2e-58
Identities = 126/336 (37%), Positives = 200/336 (59%), Gaps = 9/336 (2%)
Query: 93 IEFRKENEMTI--SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG 150
I F K N + + +G DVP+PI+ F A ++D V + G+ PT IQ P+ SG
Sbjct: 223 IHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG 282
Query: 151 RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFG 210
RD++ A TGSGKT ++ LP + + P P V++++PTRELA+QI E KF
Sbjct: 283 RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 342
Query: 211 ASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEAD 270
S ++ VYGG Q + RG ++IATPGRL+D ++ + ++VLDEAD
Sbjct: 343 FESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD 402
Query: 271 RMLDMGFEPQIRKIVDQI--RPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSA 328
RMLDMGF +R+I+ + RP+ QTLM+SAT+P+E++++A ++L + + V IG + A
Sbjct: 403 RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GA 461
Query: 329 SHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPAL 388
+ Q + + + KR +L +E S+ D I+F TKR D + S+L + +P
Sbjct: 462 CSDVKQTIYEVNKYAKRSKL---IEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTT 517
Query: 389 AIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+IHGD+ Q++R+ L +F++G +++AT VA+RG+
Sbjct: 518 SIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGL 553
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 202 bits (515), Expect = 6e-52
Identities = 118/369 (31%), Positives = 205/369 (54%), Gaps = 9/369 (2%)
Query: 61 PNWDEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGF 120
P + P P+ Y+EHP + + E ++ +++ + + G +V +PI F+
Sbjct: 151 PQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSL 210
Query: 121 PSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPL 180
P + +K+ G+ PT IQ Q P+ L GRD++ A TGSGKT ++ LP I+
Sbjct: 211 PEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRA----- 265
Query: 181 LSPGDGPIVLVLAPTRELAVQIQKECSKFGAS-SRIRNTCVYGGVPKSQQIRDLQRGVEI 239
L P L+L PTRELA+QI+++ + + R++ + GG+P Q+ LQ+ V++
Sbjct: 266 LFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKV 325
Query: 240 LIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 299
+IATPGRL+D+++ L V +V+DEAD ML MGF+ Q+ I++ I D QT++ SA
Sbjct: 326 IIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSA 385
Query: 300 TWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQ 359
T P ++QLAS LH+P+++ G L ++ + QI+ + D K+ +L + L +
Sbjct: 386 TIPTSIEQLASQLLHNPVRIITGEKNLPCAN-VRQIILWVEDPAKKKKLFEILNDKKLFK 444
Query: 360 DSKIIIFASTKRTCDEITSYL-RTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATD 418
+++F K D ++ + + G +++IH +K+Q ER +L G ++V+T
Sbjct: 445 -PPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTG 503
Query: 419 VAARGIGML 427
V RG+ ++
Sbjct: 504 VLGRGLDLI 512
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 198 bits (504), Expect = 1e-50
Identities = 121/315 (38%), Positives = 181/315 (57%), Gaps = 11/315 (3%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLP--- 170
+ E G ++ + +G K IQ A+ GRDMIG A TG+GKTL++ +P
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 164
Query: 171 GIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQI 230
I+ NA+ G P+ LVLAPTRELA Q++KE + S + C+YGG P QQ+
Sbjct: 165 KIIKYNAKH--GRGRNPLCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQM 220
Query: 231 RDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
R L GV++ + TPGR+ID+++ G NL V ++VLDEAD+ML +GF + I++++
Sbjct: 221 RQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPE 280
Query: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQ-IGSLELSASHTITQIVEVLTDFEKRDRLA 349
RQ++M+SAT P ++ L YL++P+ V +G + + IT ++ D R +
Sbjct: 281 KRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGIT-TYSIIADSYGRASII 339
Query: 350 KHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSG 409
L T + K I+F TKR D + SY + A+HGD +Q++R+ LA FR G
Sbjct: 340 GPLVT-EHAKGGKCIVFTQTKRDADRL-SYALARSFKCEALHGDISQSQRERTLAGFRDG 397
Query: 410 RSPIMVATDVAARGI 424
I+VATDVAARG+
Sbjct: 398 HFNILVATDVAARGL 412
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 191 bits (485), Expect = 2e-48
Identities = 117/312 (37%), Positives = 177/312 (56%), Gaps = 11/312 (3%)
Query: 117 EAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLP---GIV 173
+ G ++ +K G K IQ A+ GRDMIG A TG+GKTL++ +P I+
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233
NA+ G P LVLAPTRELA Q++KE + S + C+YGG P QQ+R+L
Sbjct: 180 KFNAKH--GRGKNPQCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMREL 235
Query: 234 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
G+++ + TPGR+ID+++ G NL V ++VLDEAD+ML +GF + I+ ++ RQ
Sbjct: 236 NYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQ 295
Query: 294 TLMWSATWPKEVKQLASDYLHDPIQVQ-IGSLELSASHTITQIVEVLTDFEKRDRLAKHL 352
++M+SAT P ++ L YL++P+ + +G + + IT + + D R + L
Sbjct: 296 SMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGIT-MYSIAADSYGRASIIGPL 354
Query: 353 ETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSP 412
+ K I+F TKR D + L + + A+HGD +Q +R+ LA FR G
Sbjct: 355 -VKEHGKGGKCIVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFS 412
Query: 413 IMVATDVAARGI 424
I+VATDVAARG+
Sbjct: 413 ILVATDVAARGL 424
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 189 bits (479), Expect = 9e-48
Identities = 127/344 (36%), Positives = 192/344 (54%), Gaps = 13/344 (3%)
Query: 86 QMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWP 145
+ S S + + N ++ PK +F E G + + ++ GF PT IQ + P
Sbjct: 22 ETSNSSSEKSSENNNGDSQNNEAPK---TFKELGVIDELCEACEKLGFKTPTPIQQEAIP 78
Query: 146 MALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKE 205
+ L+ RD+IG+A TGSGKT ++ LP I + P SP +VLAPTRELA QI ++
Sbjct: 79 VVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP--SPF---FAVVLAPTRELAYQISEQ 133
Query: 206 CSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKT-NLKRVTYL 264
G S +R+ + GG+ Q L + +L+ TPGRL+D LE K +LK + YL
Sbjct: 134 FEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYL 193
Query: 265 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSL 324
++DEADR+LDM F P I KI+ I +R+TL++SAT +V++L LH P++V + S
Sbjct: 194 IMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSS- 252
Query: 325 ELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEG 384
+ S T+ Q + F+ +D +L ++ + IIIFA T + LRT G
Sbjct: 253 KFSTVDTLIQRY-LFFPFKHKDTYLVYL--VNELAGNSIIIFARTVNDTQRLAILLRTLG 309
Query: 385 WPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGMLL 428
+ A+ +HG +Q+ R L +F+SG +VATDVAARG+ + L
Sbjct: 310 FSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPL 353
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 182 bits (463), Expect = 7e-46
Identities = 129/361 (35%), Positives = 195/361 (53%), Gaps = 26/361 (7%)
Query: 86 QMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGF-PSYVLDEVKQE-GFAKPTGIQCQG 143
+M+E + +++ + G V P+R+++E P +L + QE F PT IQ
Sbjct: 145 EMNERDWRILKEDYAIVTKGGTVENPLRNWEELNIIPRDLLRVIIQELRFPSPTPIQRIT 204
Query: 144 WPMALSG---RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPG----DGPIVLVLAPTR 196
P + RD +GVA+TGSGKTL++ +P ++ ++ P P DGP L+LAPTR
Sbjct: 205 IPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALILAPTR 264
Query: 197 ELAVQIQKECSKFGA--SSRIRNTC----VYGGVPKSQQIRDLQRGVEILIATPGRLIDM 250
EL QIQKE K S C + GG + L G +IL+ATPGRLID
Sbjct: 265 ELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDS 324
Query: 251 LEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTLMWSATWPKE 304
LE +K+V LVLDEAD+M+D+GFE Q+ I+ ++ +RQTLM++AT
Sbjct: 325 LENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPV 384
Query: 305 VKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKII 364
++++A+ Y+ P+ IG +E + I Q+VE + E + K L+ D II
Sbjct: 385 IEKIAAGYMQKPVYATIG-VETGSEPLIQQVVEYADNDEDK---FKKLKPIVAKYDPPII 440
Query: 365 IFASTKRTCDEITSYLRTE-GWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARG 423
IF + K+T D + + E +HG K+Q +R+ L FR+ + IM+AT+VAARG
Sbjct: 441 IFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARG 500
Query: 424 I 424
+
Sbjct: 501 L 501
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 180 bits (456), Expect = 4e-45
Identities = 106/353 (30%), Positives = 192/353 (54%), Gaps = 21/353 (5%)
Query: 95 FRKENEMTISG---HDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGR 151
+RK + +T++ ++P+P+ SF+ +GF + +L +++ +G+ PT IQ Q W +A G+
Sbjct: 11 YRKRHNITLTSWNMRNLPEPVLSFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGK 70
Query: 152 DMIGVAATGSGKTLSYCLPGIVHI-NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFG 210
+++ ++ G+GKTL Y LPGI+ + N + L+ GPIVL+L RE AV +Q+E +
Sbjct: 71 NIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQHKKGPIVLILVDCREAAVMVQREVLYYT 130
Query: 211 ASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGK--TNLKRVTYLVLDE 268
+R C+ G ++L+A+ GRL+ M++ K L+R TYLVLD
Sbjct: 131 NPLELRTHCLLGNSQWQGHAE-----CDLLVASAGRLLQMIDNKKHVVELERCTYLVLDN 185
Query: 269 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSA 328
DRM+D+G E I +++ ++RP Q ++ S +W +K++A+ +L +++G +
Sbjct: 186 IDRMIDVGLEGNICRLLCRLRPHAQLIVSSTSWSSNLKRMANKFLGQYTAIRVGEINNIG 245
Query: 329 --SHTITQIVEVLTDFEKRDRLAKHLETA--SQDQDSKIIIFASTKRTCDEITSYLRTEG 384
I Q VEV+ K +RL K L + D K++I+ ++ +E+ +R
Sbjct: 246 VRLQNIRQRVEVVNGLSKVERLMKELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIR-NC 304
Query: 385 WPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAAR-----GIGMLLKFNF 432
P IHG + E ++ +F +G I+VAT + + GI ++ ++F
Sbjct: 305 VPCEGIHGGRTAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDF 357
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 179 bits (454), Expect = 7e-45
Identities = 111/331 (33%), Positives = 178/331 (53%), Gaps = 16/331 (4%)
Query: 98 ENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVA 157
++++ D +PI SF++ G VL V + GF KP+ IQ + L GRD+I A
Sbjct: 20 DDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQA 79
Query: 158 ATGSGKT----LSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASS 213
+G+GKT LS C +V +++ + + L+L+PTRELA Q +K G +
Sbjct: 80 QSGTGKTSMIALSVCQ--VVDTSSREVQA-------LILSPTRELATQTEKTIQAIGLHA 130
Query: 214 RIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML 273
I+ GG + IR L+ GV ++ TPGR+ DM++ + + L+LDE+D ML
Sbjct: 131 NIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEML 190
Query: 274 DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTIT 333
GF+ QI + + PD Q + SAT P E+ ++ S ++ +P+++ + EL+
Sbjct: 191 SRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQ 250
Query: 334 QIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGD 393
V V + K D L +T + Q +IF +TKR D ++ +R+ + ++HGD
Sbjct: 251 FFVAVEKEEWKFDTLCDLYDTLTITQ---AVIFCNTKRKVDYLSEKMRSHNFTVSSMHGD 307
Query: 394 KAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
Q ERD ++ EFRSG S +++ TDV ARGI
Sbjct: 308 MPQKERDAIMNEFRSGDSRVLITTDVWARGI 338
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 178 bits (452), Expect = 1e-44
Identities = 112/313 (35%), Positives = 177/313 (55%), Gaps = 10/313 (3%)
Query: 113 RSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 172
++F + G + + Q G+ KPT IQ + P+AL GRD+IG+A TGSGKT ++ LP
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP-- 81
Query: 173 VHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRD 232
+NA LL LVL PTRELA QI ++ G+S +++ + GG+ Q
Sbjct: 82 -ILNA--LLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 138
Query: 233 LQRGVEILIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 291
L + I+IATPGRLID LE K NL+ + YLV+DEADR+L+M FE ++ KI+ I D
Sbjct: 139 LAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 292 RQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKH 351
R+T ++SAT K+V++L L +P++ + S T+ ++ + + +
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVS----SKYQTVEKLQQYYIFIPSKFKDTYL 254
Query: 352 LETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRS 411
+ ++ + +IF ST LR G+ A+ +HG +Q++R L +F++
Sbjct: 255 VYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 314
Query: 412 PIMVATDVAARGI 424
I++ATDVA+RG+
Sbjct: 315 SILLATDVASRGL 327
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 178 bits (451), Expect = 2e-44
Identities = 114/319 (35%), Positives = 177/319 (54%), Gaps = 16/319 (5%)
Query: 110 KPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKT----L 165
KPI+SFD+ G VL V G+ KP+ IQ + L GRD+I A +G+GKT +
Sbjct: 19 KPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAI 78
Query: 166 SYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVP 225
S C IV+I+++ + VLVL+P+RELA Q +K GA + I+ GG
Sbjct: 79 SVCQ--IVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKS 129
Query: 226 KSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIV 285
+ I+ L+RGV + TPGR+ DM++ G K V LVLDE+D ML G + QI +
Sbjct: 130 IGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVY 189
Query: 286 DQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKR 345
+ D Q + SAT P+E+ ++ ++ DP+++ + EL+ V+V + K
Sbjct: 190 RALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKF 249
Query: 346 DRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAE 405
D L + +Q IIF +T++ D +T +R+ + ++HGDK Q ERD ++ +
Sbjct: 250 DTLCDLYGRLTINQ---AIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQ 306
Query: 406 FRSGRSPIMVATDVAARGI 424
FRS +S +++A+DV ARGI
Sbjct: 307 FRSFKSRVLIASDVWARGI 325
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 174 bits (442), Expect = 2e-43
Identities = 107/340 (31%), Positives = 176/340 (51%), Gaps = 16/340 (4%)
Query: 85 AQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGW 144
A+ + +EF E+ + I +FD+ G +L + GF KP+ IQ +
Sbjct: 6 AEKDDMATVEFESSEEVNV--------IPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAV 57
Query: 145 PMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQK 204
P L RD+I A +G+GKT ++ + + ++ Q + L+L+PTRELAVQIQK
Sbjct: 58 PAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQA-----LILSPTRELAVQIQK 112
Query: 205 ECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYL 264
G ++ GG + IR L G ++ TPGR+ DM+ + + L
Sbjct: 113 VVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLL 172
Query: 265 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSL 324
VLDEAD ML+ GF+ Q+ I + P Q ++ SAT P E+ ++ S ++ DPI++ +
Sbjct: 173 VLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRD 232
Query: 325 ELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEG 384
EL+ V V + K D L +T + Q ++F +T+R D +T ++
Sbjct: 233 ELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQ---AVLFCNTRRKVDWLTDKMKEAN 289
Query: 385 WPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ ++HGD Q +RD V+ EFR+G + ++++TDV ARG+
Sbjct: 290 FTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGL 329
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 174 bits (441), Expect = 2e-43
Identities = 113/315 (35%), Positives = 177/315 (55%), Gaps = 15/315 (4%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
SF E ++ K ++KPT IQ + P AL G D+IG+A TGSGKT ++ +P +
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183
Query: 174 HI--NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIR 231
+ + +P + +LAPTRELA QI++ G+ +R+TC+ GG+ Q R
Sbjct: 184 RLWHDQEPYYA-------CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQAR 236
Query: 232 DLQRGVEILIATPGRLIDMLEIGK-TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI-R 289
DL R I+IATPGRL+D LE K +L+++ +LV+DEADR+LDM F P + +I+ I
Sbjct: 237 DLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPT 296
Query: 290 PDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLA 349
+R T ++SAT ++ +L L +P++ + S + T+ Q + V+ K L
Sbjct: 297 QERTTYLFSATMTSKIDKLQRASLTNPVKCAV-SNKYQTVDTLVQTLMVVPGGLKNTYL- 354
Query: 350 KHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSG 409
+ ++ +IIF TK + ++ + A A+HGD QN+R L F++G
Sbjct: 355 --IYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAG 412
Query: 410 RSPIMVATDVAARGI 424
+ I+VATDVAARG+
Sbjct: 413 KRSILVATDVAARGL 427
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 174 bits (440), Expect = 3e-43
Identities = 110/344 (31%), Positives = 179/344 (51%), Gaps = 20/344 (5%)
Query: 93 IEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRD 152
+EF E++I I +FD+ G +L + GF KP+ IQ + P L RD
Sbjct: 14 VEFESSEEVSI--------IPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARD 65
Query: 153 MIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGAS 212
+I A +G+GKT ++ + + ++ Q + L+L+PTRELAVQIQK G
Sbjct: 66 VIAQAQSGTGKTATFSISVLQSLDTQVRETQA-----LILSPTRELAVQIQKVVLALGDY 120
Query: 213 SRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRM 272
++ GG + IR L G ++ TPGR+ DM+ + + LVLDEAD M
Sbjct: 121 MNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEM 180
Query: 273 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTI 332
L+ GF+ Q+ I + P Q ++ SAT P E+ ++ S ++ DPI++ + EL+
Sbjct: 181 LNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK 240
Query: 333 TQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHG 392
V V + K D L +T + Q ++F +T+R D +T ++ + ++HG
Sbjct: 241 QFFVAVDREEWKFDTLIDLYDTLTITQ---AVLFCNTRRKVDWLTDKMKEANFTVSSMHG 297
Query: 393 DKAQNERDWVLAEFRSGRSPIMVATDVAARGIGM----LLKFNF 432
D Q +RD V+ EFR+G + ++++TDV ARG+ + L+ F F
Sbjct: 298 DMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVHFRF 341
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 173 bits (438), Expect = 5e-43
Identities = 112/313 (35%), Positives = 172/313 (54%), Gaps = 10/313 (3%)
Query: 113 RSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 172
+SF E G + D ++ G+ KP+ IQ P AL G+D+IG+A TGSGKT ++ +P +
Sbjct: 44 KSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103
Query: 173 VHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRD 232
Q LL LVL PTRELA QI ++ G+ + + GGV + Q
Sbjct: 104 -----QSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMA 158
Query: 233 LQRGVEILIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 291
L R I++ATPGRL+D LE K NLK + +L++DEADR+L+M FE ++ KI+ I +
Sbjct: 159 LARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRE 218
Query: 292 RQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKH 351
R+T ++SAT K+V +L L DP +V + S + + + V +++
Sbjct: 219 RRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKE----TYL 274
Query: 352 LETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRS 411
+ ++ + I+F +T T +I LR G A+ +HG +Q +R L +F+S
Sbjct: 275 VYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAR 334
Query: 412 PIMVATDVAARGI 424
I+V TDVAARG+
Sbjct: 335 EILVCTDVAARGL 347
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 172 bits (436), Expect = 9e-43
Identities = 108/331 (32%), Positives = 173/331 (51%), Gaps = 11/331 (3%)
Query: 97 KENEMTISGHDVPKPIR---SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDM 153
KE +MT + + + +FD G +L + GF KP+ IQ + + GRD+
Sbjct: 19 KEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDV 78
Query: 154 IGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASS 213
I + +G+GKT ++ + + ++ Q + L+LAPTRELAVQIQK G
Sbjct: 79 IAQSQSGTGKTATFSISVLQCLDIQVRETQA-----LILAPTRELAVQIQKGLLALGDYM 133
Query: 214 RIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML 273
++ GG + IR L G ++ TPGR+ DM+ + + LVLDEAD ML
Sbjct: 134 NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEML 193
Query: 274 DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTIT 333
+ GF+ QI + + P Q ++ SAT P E+ ++ + ++ DPI++ + EL+
Sbjct: 194 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQ 253
Query: 334 QIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGD 393
V V + K D L +T + Q +IF +TKR D +T +R + ++HGD
Sbjct: 254 FFVAVEREEWKFDTLCDLYDTLTITQ---AVIFCNTKRKVDWLTEKMREANFTVSSMHGD 310
Query: 394 KAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
Q ER+ ++ EFRSG S ++++TDV ARG+
Sbjct: 311 MPQKERESIMKEFRSGASRVLISTDVWARGL 341
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 172 bits (435), Expect = 1e-42
Identities = 118/322 (36%), Positives = 178/322 (54%), Gaps = 21/322 (6%)
Query: 110 KPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCL 169
K + SF + P +L + + ++ PT IQ P + GR++I A TG GKT+ + +
Sbjct: 96 KTLSSFKDLCSP--LLIKALGKEYSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLI 153
Query: 170 PGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQ 229
P I+ + Q P +++PTREL QI+ E SK A SRIR +YG K Q
Sbjct: 154 P-IIERHRQM-----KKPQACIISPTRELCEQIRVEASKLVAGSRIRVVSIYG---KKQD 204
Query: 230 IRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
+ GV+I++ATPGRLID+L K +L + VLDEAD++LDMGFE IR+I +
Sbjct: 205 LPSYS-GVDIVVATPGRLIDLLHRKKVDLSEIRMFVLDEADKLLDMGFEIPIREIHGFVP 263
Query: 290 PDRQTLMWSATWPKEVKQLASDYL-HDPIQVQIGSLELSASHTITQIVEV------LTDF 342
+ QT ++SAT+ ++ ++ + +L D + ++I S L + +IVEV L +
Sbjct: 264 KNTQTCLFSATYSPKLTRMINYFLPEDKVSIEISSETL--KNIRQEIVEVRNKKKMLLNI 321
Query: 343 EKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWV 402
K + + Q K+++F K C E+ L+ G +++HGDK Q +RD
Sbjct: 322 LKGPDINLKGSWRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEA 381
Query: 403 LAEFRSGRSPIMVATDVAARGI 424
L FR+GR P+MVAT VAARGI
Sbjct: 382 LKGFRNGRFPVMVATSVAARGI 403
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 172 bits (435), Expect = 1e-42
Identities = 125/367 (34%), Positives = 191/367 (51%), Gaps = 26/367 (7%)
Query: 83 DVAQMSE-SEVIEFRK----ENEMTISGHDVP-KPIRSFDEAGFPSYVLDEVKQEGFAKP 136
DV M + SE + F K E ++T S V KP ++F EA + V G++K
Sbjct: 305 DVFNMQKISEGLMFNKFFDAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKT 364
Query: 137 TGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH-INAQPLLSPGDG---PIVLVL 192
T IQ P+ G D++ A TGSGKT ++ LP + I+ L + G+G P ++L
Sbjct: 365 TPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIIL 424
Query: 193 APTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLE 252
PTRELA QI E KF + + VYGG+ +++G I++ T GR+ E
Sbjct: 425 TPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCE 484
Query: 253 IGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVD----QIRPDRQTLMWSATWPKEVKQ 307
G L + + VLDEADRM+D MGF I IV+ + +RQTLM+SAT+P V++
Sbjct: 485 EGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQE 544
Query: 308 LASDYLHDP-IQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHL---------ETASQ 357
A +L + + + I + +A+ + Q E EK+D+L + L E +++
Sbjct: 545 AARAFLRENYVMIAIDKIG-AANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAE 603
Query: 358 DQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVAT 417
K ++F S + D + S L + PA+ IHG + Q ER L +FR+G P+++AT
Sbjct: 604 VYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIAT 663
Query: 418 DVAARGI 424
VA RG+
Sbjct: 664 AVAERGL 670
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 170 bits (430), Expect = 4e-42
Identities = 112/340 (32%), Positives = 174/340 (50%), Gaps = 16/340 (4%)
Query: 85 AQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGW 144
AQ + +EF ++ + I +F+ +L + GF KP+ IQ +
Sbjct: 6 AQAEDLSNVEFETSEDVEV--------IPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSI 57
Query: 145 PMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQK 204
+ GRD+I A +G+GKT ++ + + Q L + VL L+PTRELAVQIQK
Sbjct: 58 TPIVKGRDVIAQAQSGTGKTATFSISIL-----QSLDTTLRETQVLCLSPTRELAVQIQK 112
Query: 205 ECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYL 264
G ++ GG + IR L G I+ TPGR+ DM++ + + L
Sbjct: 113 VILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKRRVLRTRAIKML 172
Query: 265 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSL 324
VLDEAD ML+ GF+ QI + + P Q ++ SAT P E+ ++ S ++ DPI++ +
Sbjct: 173 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRD 232
Query: 325 ELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEG 384
EL+ V V + K D L +T + Q +IF +TKR D +T +R
Sbjct: 233 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ---AVIFCNTKRKVDWLTEKMREAN 289
Query: 385 WPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ ++HGD Q ERD ++ EFR+G+S +++ TDV ARGI
Sbjct: 290 FTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGI 329
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 169 bits (429), Expect = 6e-42
Identities = 111/333 (33%), Positives = 176/333 (52%), Gaps = 18/333 (5%)
Query: 110 KPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCL 169
+P +SF ++ P + V++ G+ + T IQ P+ G+D++ A TGSGKT ++ L
Sbjct: 295 QPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLL 354
Query: 170 PGIVHINAQPLLSPG-DG---PIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVP 225
P + + + L+ G +G P ++L PTRELA QI E KF S + VYGG+
Sbjct: 355 PIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGIN 414
Query: 226 KSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKI 284
+ +G I++ T GR+ E G L + YLVLDEADRM+D MGF P+I +I
Sbjct: 415 VGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQI 474
Query: 285 VD----QIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLT 340
++ RQT+M+SAT+P V++ A L + + +A+ + Q E+
Sbjct: 475 INYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCD 534
Query: 341 DFEKRDRLAK----HLETASQDQDS-----KIIIFASTKRTCDEITSYLRTEGWPALAIH 391
K D+L K ++T + +++S K I+F + ++ D + S + PA+ IH
Sbjct: 535 RTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIH 594
Query: 392 GDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
G + Q ER L FRSG P+++AT V RG+
Sbjct: 595 GAREQKERSAALKLFRSGAKPVLIATAVVERGL 627
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 169 bits (427), Expect = 1e-41
Identities = 122/359 (33%), Positives = 184/359 (50%), Gaps = 25/359 (6%)
Query: 90 SEVIEFRK--ENEMTISGHDVP---KPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGW 144
SE + F K + E+ I+ P K ++F EA + V G+ K T IQ
Sbjct: 524 SEGLMFNKFFDAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTL 583
Query: 145 PMALSGRDMIGVAATGSGKTLSYCLPGIVH-INAQPLLSPGDG---PIVLVLAPTRELAV 200
P+ G D++ A TGSGKT ++ LP + I+ L + G+G P ++L PTREL
Sbjct: 584 PLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTD 643
Query: 201 QIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKR 260
QI E KF + + VYGG+ +++G I++ T GR+ E G L +
Sbjct: 644 QIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDK 703
Query: 261 VTYLVLDEADRMLD-MGFEPQIRKIVD----QIRPDRQTLMWSATWPKEVKQLASDYLHD 315
+ VLDEADRM+D MGF I IV+ + +RQTLM+SAT+P V++ A ++L +
Sbjct: 704 CRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKE 763
Query: 316 P-IQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHL---------ETASQDQDSKIII 365
I + I + +A+ + Q E EK+D+L + L E S+ K I+
Sbjct: 764 GYIMLAIDKIG-AANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIV 822
Query: 366 FASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
F S + D + S L + PA+ IHG + Q ER L +FR+G P+++AT VA RG+
Sbjct: 823 FVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGL 881
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 167 bits (423), Expect = 3e-41
Identities = 117/352 (33%), Positives = 176/352 (49%), Gaps = 17/352 (4%)
Query: 90 SEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALS 149
+EV+E ++E S DV + SFD G +L + GF KP+ IQ +G
Sbjct: 21 NEVLE--GQDEFFTSYDDVHE---SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
Query: 150 GRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKF 209
G D+I A +G+GKT ++C + ++ + LVLAPTRELA QI+K
Sbjct: 76 GLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQA-----LVLAPTRELAQQIEKVMRAL 130
Query: 210 GASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEA 269
G ++ GG + R LQ GV +++ TPGR+ DML+ + VLDEA
Sbjct: 131 GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEA 190
Query: 270 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSAS 329
D ML GF+ QI I + P Q ++SAT P E ++ ++ P+++ + EL+
Sbjct: 191 DEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLE 250
Query: 330 HTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALA 389
V V + K + L ET + Q +IF +T+R D +T +R+ A
Sbjct: 251 GIKQFYVNVEKEEWKLETLCDLYETLAITQS---VIFVNTRRKVDWLTDKMRSRDHTVSA 307
Query: 390 IHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGMLLKFNFFSIGLNFSL 441
HGD QN RD ++ EFRSG S +++ TD+ ARGI + S+ +NF L
Sbjct: 308 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV----QQVSLVINFDL 355
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 166 bits (421), Expect = 5e-41
Identities = 110/300 (36%), Positives = 171/300 (56%), Gaps = 13/300 (4%)
Query: 126 DEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGD 185
DE+K + P+ IQ + P+AL G+D+IG+A TGSGKT ++ LP I+H LL
Sbjct: 77 DELKWKA---PSKIQREAIPVALQGKDVIGLAETGSGKTGAFALP-ILHA----LLENPQ 128
Query: 186 GPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPG 245
LVL PTRELA QI ++ G+ I+ V GG+ Q L + I+IATPG
Sbjct: 129 RYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPG 188
Query: 246 RLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 304
RL+D LE K NLK + YLV+DEADR+L+M FE ++ KI+ + +R+T ++SAT K+
Sbjct: 189 RLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKK 248
Query: 305 VKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKII 364
VK+L L DP++V++ + T+ Q+ + + + + ++ + +
Sbjct: 249 VKKLQRASLKDPVKVEVS----NKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFM 304
Query: 365 IFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
IF ST + LR G A+ +HG +QN+R L +F++ I+++TDVA+RG+
Sbjct: 305 IFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGL 364
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 166 bits (419), Expect = 8e-41
Identities = 113/328 (34%), Positives = 164/328 (49%), Gaps = 12/328 (3%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
SFD G +L + GF KP+ IQ +G G D+I A +G+GKT ++C G++
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGVL 98
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233
LL LVLAPTRELA QI+K G ++ GG + R L
Sbjct: 99 QQLDYALLQCQ----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRIL 154
Query: 234 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
Q GV +++ TPGR+ DML + VLDEAD ML GF+ QI I + P Q
Sbjct: 155 QAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214
Query: 294 TLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLE 353
++SAT P E ++ ++ P+++ + EL+ V V + K + L E
Sbjct: 215 VGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYE 274
Query: 354 TASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPI 413
T + Q +IF +T+R D +T +R+ A HGD QN RD ++ EFRSG S +
Sbjct: 275 TLAITQS---VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 331
Query: 414 MVATDVAARGIGMLLKFNFFSIGLNFSL 441
++ TD+ ARGI + S+ +NF L
Sbjct: 332 LITTDLLARGIDV----QQVSLVINFDL 355
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 166 bits (419), Expect = 8e-41
Identities = 97/311 (31%), Positives = 161/311 (51%), Gaps = 8/311 (2%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
+FD+ +L + GF KP+ IQ + + GRD+I A +G+GKT ++ + +
Sbjct: 17 NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQ 76
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233
I+ L+LAPTRELA QIQ+ G ++ + GG + R L
Sbjct: 77 QIDTSIRECQA-----LILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARIL 131
Query: 234 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
+ G +++ TPGR+ DM+ + + VLDEAD ML GF+ QI+ + + PD Q
Sbjct: 132 ESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQ 191
Query: 294 TLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLE 353
++ SAT P +V +++ ++ DP+ + + EL+ V V + K L +
Sbjct: 192 VILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYD 251
Query: 354 TASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPI 413
T S Q +IF +T+R D++T + + A+HGD Q +R+ ++ +FRSG S +
Sbjct: 252 TLSITQS---VIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRV 308
Query: 414 MVATDVAARGI 424
++ TD+ ARGI
Sbjct: 309 LITTDLLARGI 319
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 165 bits (418), Expect = 1e-40
Identities = 103/318 (32%), Positives = 171/318 (53%), Gaps = 6/318 (1%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F+ V + +K++G+ PT IQ + P+ LSG D++ +A TGSGKT ++ +P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ 234
+ P G L+L+PTR+LA Q K + G + +R + + GG Q +L
Sbjct: 90 LKQHV---PQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELT 146
Query: 235 RGVEILIATPGRLIDML-EIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
+G +++IATPGRL+ +L E+ L+ V Y+V DEAD + MGF Q+ +I+ Q+ +RQ
Sbjct: 147 KGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQ 206
Query: 294 TLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLE 353
TL++SAT P + + A L +P V++ +E S + + EK L +L
Sbjct: 207 TLLFSATLPSALAEFAKAGLREPQLVRL-DVENKISPDLKLSFLTVRPEEKYSALL-YLV 264
Query: 354 TASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPI 413
D + +IF STK + + S + E +GD Q+ R ++ FR+ ++ +
Sbjct: 265 REHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTML 324
Query: 414 MVATDVAARGIGMLLKFN 431
++ TD+AARGI + L N
Sbjct: 325 LIVTDIAARGIDIPLLDN 342
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 164 bits (416), Expect = 2e-40
Identities = 103/315 (32%), Positives = 161/315 (50%), Gaps = 12/315 (3%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
+ SFD+ +L + GF KP+ IQ + +G+D+I A +G+GKT ++ +
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87
Query: 172 IVHINAQPLLSPGDGPIV--LVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQ 229
+ I+ + P V LV+APTRELA QIQK S G + GG
Sbjct: 88 LQRIDHED-------PHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDD 140
Query: 230 IRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
R L+ G+ +++ TPGR+ DM+ + R+ VLDEAD ML GF+ QI ++ +
Sbjct: 141 QRKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMP 200
Query: 290 PDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLA 349
D Q ++ SAT P EV + + ++ +PI++ + EL+ + V D K D L
Sbjct: 201 QDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLC 260
Query: 350 KHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSG 409
+ Q +IF +T+R D +T + + +HGD Q ERD ++ EFRSG
Sbjct: 261 DLYNVVNVTQ---AVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSG 317
Query: 410 RSPIMVATDVAARGI 424
S +++ TD+ ARGI
Sbjct: 318 SSRVLITTDILARGI 332
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 162 bits (410), Expect = 9e-40
Identities = 110/357 (30%), Positives = 187/357 (51%), Gaps = 13/357 (3%)
Query: 75 KNFYQEHP--DVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEA----GFPSYVLDEV 128
KN E+P ++ + E + + RK+ + +SG+++P P++SF E G Y+L +
Sbjct: 98 KNEIVENPKKELNRQMERDALS-RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNL 156
Query: 129 KQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI 188
+ GF +PT IQ Q P+ LSGR+ A TGSGKT ++ P ++ + DG
Sbjct: 157 AELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKVLNCRPSTDGIR 216
Query: 189 VLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLI 248
++L+P RELA Q +E K S + + K+ L ++LI+TP RL
Sbjct: 217 AVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKL--WCDVLISTPMRLK 274
Query: 249 DMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI-RPDRQTLMWSATWPKEVKQ 307
++ K +L +V YLVLDE+D++ + QI +V P ++SAT P V++
Sbjct: 275 RAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEE 334
Query: 308 LASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFA 367
LA +HD ++V IG + +AS T+ Q +++ + +L ++ ++ + ++IF
Sbjct: 335 LARSIMHDAVRVIIGR-KNTASETVKQ--KLVFAGSEEGKLLALRQSFAESLNPPVLIFV 391
Query: 368 STKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+K E+ L+ E A IH D ER+ + +FR+G +++ATDV ARG+
Sbjct: 392 QSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGM 448
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 161 bits (408), Expect = 2e-39
Identities = 104/314 (33%), Positives = 158/314 (50%), Gaps = 9/314 (2%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
+ SFD+ +L + GF KP+ IQ + + G D+I A +G+GKT ++ +
Sbjct: 31 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 90
Query: 172 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIR 231
+ I + LVLAPTRELA QIQK G GG +++
Sbjct: 91 LQQIELDLKATQA-----LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ 145
Query: 232 DLQ-RGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
LQ I++ TPGR+ DML + K + VLDEAD ML GF+ QI I ++
Sbjct: 146 KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS 205
Query: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAK 350
+ Q ++ SAT P +V ++ ++ DPI++ + EL+ + V + K D L
Sbjct: 206 NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 265
Query: 351 HLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGR 410
ET + Q +IF +T+R D +T + + A+HGD Q ERD ++ EFRSG
Sbjct: 266 LYETLTITQ---AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 411 SPIMVATDVAARGI 424
S +++ TD+ ARGI
Sbjct: 323 SRVLITTDLLARGI 336
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 160 bits (405), Expect = 4e-39
Identities = 103/313 (32%), Positives = 159/313 (49%), Gaps = 8/313 (2%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
I +FD+ +L + GF +P+ IQ + L RD++ A +G+GKT ++ +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 172 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIR 231
+ I+ L+LAPTRELA QIQK G + GG +
Sbjct: 78 LQKIDTSLKQCQA-----LILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMA 132
Query: 232 DLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 291
LQ GV +++ TPGR+ DM++ V VLDEAD ML GF+ QI I + P
Sbjct: 133 ALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPT 192
Query: 292 RQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKH 351
Q ++ SAT P++V ++ + ++ DPI++ + EL+ V V + K D L
Sbjct: 193 AQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDL 252
Query: 352 LETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRS 411
ET + Q +IF +T+R D +T L + ++HGD Q +RD ++ EFR+G S
Sbjct: 253 YETVTVTQ---AVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSS 309
Query: 412 PIMVATDVAARGI 424
I++ TD+ ARGI
Sbjct: 310 RILITTDLLARGI 322
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 159 bits (402), Expect = 8e-39
Identities = 107/312 (34%), Positives = 161/312 (51%), Gaps = 4/312 (1%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
SF + +L + GF +PT IQ P+ L G+D+ AATG+GKT ++ LP +
Sbjct: 219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 278
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233
+ +P +P VLVL PTREL +Q+ + I GG+ Q L
Sbjct: 279 RLIYKPRQAPVTR--VLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAAL 336
Query: 234 QRGVEILIATPGRLIDMLE-IGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 292
+ +ILIATPGRLID L +L + L+LDEADRMLD FE Q+++I+ R
Sbjct: 337 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 396
Query: 293 QTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHL 352
QT+++SAT EVK LAS L +P+++ + S A + + + + E DR A
Sbjct: 397 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNRE-GDREAIVA 455
Query: 353 ETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSP 412
++ +++F TK+ + L G +HG+ +Q +R L F+ +
Sbjct: 456 ALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQID 515
Query: 413 IMVATDVAARGI 424
I+VATDVAARG+
Sbjct: 516 ILVATDVAARGL 527
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 159 bits (402), Expect = 8e-39
Identities = 115/355 (32%), Positives = 189/355 (52%), Gaps = 16/355 (4%)
Query: 79 QEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTG 138
+E +V S SE + K+ ++ + +V P + + + + +++K G
Sbjct: 63 EEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFP 121
Query: 139 IQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP-----GDGPIVLVLA 193
IQ + M L G D++G A TG GKTL++ LP + + P S G P VLVL
Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLL 181
Query: 194 PTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEI 253
PTRELA Q+ + +G S + + C+YGG Q L+RGV+I++ TPGR+ D +E
Sbjct: 182 PTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIER 241
Query: 254 GKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR--QTLMWSATWPKEVKQLASD 311
+ + + VLDEAD ML MGF + I+ ++ QTL++SAT P VK +++
Sbjct: 242 QNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNR 301
Query: 312 YL-HDPIQVQ-IGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAST 369
+L D + +G+ ++ AS+++ I + + RL + + + IIFA T
Sbjct: 302 FLKRDQKTIDLVGNDKMKASNSVRHIA-IPCNKAAMARLIPDI-ISCYSSGGQTIIFAET 359
Query: 370 KRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
K E++ L +G + A+HG+ Q++R+ LA FR+G+ +VAT+VAARG+
Sbjct: 360 KVQVSELSGLL--DG--SRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGL 410
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 159 bits (402), Expect = 8e-39
Identities = 103/315 (32%), Positives = 169/315 (52%), Gaps = 11/315 (3%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
+F+ G + ++ K+ G KPT +Q P L+GRD++G+A TGSGKT ++ LP +
Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 118
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233
+ P G LV+ PTRELA Q+ ++ G+ +R + + GG+ Q L
Sbjct: 119 RLAEDPY-----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSL 173
Query: 234 QRGVEILIATPGRLIDMLEIG---KTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
I+I TPGR+ +LE R +LVLDEADR+LD+GF+ ++R I +
Sbjct: 174 VSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPK 233
Query: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAK 350
RQTL++SAT ++ L ++ + L T+TQ + D + ++
Sbjct: 234 SRQTLLFSATMTSNLQALL-EHSSNKAYFYEAYEGLKTVDTLTQQF-IFEDKDAKELYLV 291
Query: 351 HLETASQDQDSK-IIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSG 409
H+ + +D+ + +IF ST RTC ++ L +A+H +Q+ R L++F+SG
Sbjct: 292 HILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSG 351
Query: 410 RSPIMVATDVAARGI 424
+ PI++ATDVA+RG+
Sbjct: 352 KVPILLATDVASRGL 366
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 159 bits (401), Expect = 1e-38
Identities = 114/351 (32%), Positives = 186/351 (52%), Gaps = 19/351 (5%)
Query: 80 EHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGI 139
E P V + S S+ E E T + F+E L +++ GF T +
Sbjct: 16 EEPVVDEKSTSKQNNAAPEGEQTTC-------VEKFEELKLSQPTLKAIEKMGFTTMTSV 68
Query: 140 QCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELA 199
Q + P L+GRD++G A TGSGKTL++ +P I +++ P +G ++V+ PTRELA
Sbjct: 69 QARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLK-FKPRNGTGIIVITPTRELA 127
Query: 200 VQI---QKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKT 256
+QI +E +F + + V GG + Q+ L +GV +LIATPGRL+D L+ K
Sbjct: 128 LQIFGVARELMEFHSQT---FGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKG 184
Query: 257 NL-KRVTYLVLDEADRMLDMGFEPQIRKIVDQI-RPDRQTLMWSATWPKEVKQLASDYLH 314
+ K + L++DEADR+L++GFE ++R+I+ + DRQ++++SAT +V+ LA L
Sbjct: 185 FVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLR 244
Query: 315 -DPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTC 373
P+ + + +++ + V+ D +KR L ++Q KII+F S+ +
Sbjct: 245 PGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLL--FSFLKRNQKKKIIVFLSSCNSV 302
Query: 374 DEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
L P L +HG + Q +R EF + I++ TDVAARG+
Sbjct: 303 KYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGL 353
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 159 bits (401), Expect = 1e-38
Identities = 103/325 (31%), Positives = 170/325 (51%), Gaps = 17/325 (5%)
Query: 113 RSFDEAGFPSYVLDE-----VKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSY 167
R E F ++ + E +K G IQ + + G+D+I A TG+GKT S+
Sbjct: 132 REQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSF 191
Query: 168 CLPGIVHINA-QPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPK 226
+P I + Q + P VLVLAPTRELA Q+ K+ + ++ C YGG
Sbjct: 192 AIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDI--TRKLSVACFYGGTSY 249
Query: 227 SQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVD 286
QI ++ G++IL+ TPGR+ D L+ G+ +L ++ ++VLDE D+MLD+GF Q+ I+
Sbjct: 250 QSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIH 309
Query: 287 Q-----IRPDRQTLMWSATWPKEVKQLASDYLHDPIQV--QIGSLELSASHTITQIVEVL 339
+ + QTL++SAT P+ V ++A Y+ + +G + A+ T+ + +
Sbjct: 310 ESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLA-IQ 368
Query: 340 TDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNER 399
+ +R + + + + IIF TK+ E+ + A +HGD AQ++R
Sbjct: 369 CHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIK-QNAQCLHGDIAQSQR 427
Query: 400 DWVLAEFRSGRSPIMVATDVAARGI 424
+ L FR G ++VAT+VAARG+
Sbjct: 428 EITLKGFREGSFKVLVATNVAARGL 452
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 158 bits (400), Expect = 1e-38
Identities = 99/315 (31%), Positives = 165/315 (51%), Gaps = 9/315 (2%)
Query: 110 KPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCL 169
K + FD+ +L V GF +P+ IQ + + G D++ A +G+GKT ++ +
Sbjct: 19 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 78
Query: 170 PGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQ 229
+ I+ P L+LAPTRELA+QIQK I+ GG +
Sbjct: 79 AALQRIDTSV-----KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 133
Query: 230 IRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
L R +I++ TPGR+ D ++ + ++ +LDEAD ML GF+ QI +I +
Sbjct: 134 AEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP 192
Query: 290 PDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLA 349
P Q ++ SAT P +V ++ + ++ +P+++ + EL+ V V + K + L
Sbjct: 193 PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLT 252
Query: 350 KHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSG 409
++ S Q +IF +T+R +E+T+ LR + + AI+ D Q ERD ++ EFRSG
Sbjct: 253 DLYDSISVTQ---AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 309
Query: 410 RSPIMVATDVAARGI 424
S I+++TD+ ARGI
Sbjct: 310 SSRILISTDLLARGI 324
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 158 bits (400), Expect = 1e-38
Identities = 99/315 (31%), Positives = 165/315 (51%), Gaps = 9/315 (2%)
Query: 110 KPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCL 169
K + FD+ +L V GF +P+ IQ + + G D++ A +G+GKT ++ +
Sbjct: 19 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 78
Query: 170 PGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQ 229
+ I+ P L+LAPTRELA+QIQK I+ GG +
Sbjct: 79 AALQRIDTSV-----KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 133
Query: 230 IRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
L R +I++ TPGR+ D ++ + ++ +LDEAD ML GF+ QI +I +
Sbjct: 134 AEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP 192
Query: 290 PDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLA 349
P Q ++ SAT P +V ++ + ++ +P+++ + EL+ V V + K + L
Sbjct: 193 PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLT 252
Query: 350 KHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSG 409
++ S Q +IF +T+R +E+T+ LR + + AI+ D Q ERD ++ EFRSG
Sbjct: 253 DLYDSISVTQ---AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 309
Query: 410 RSPIMVATDVAARGI 424
S I+++TD+ ARGI
Sbjct: 310 SSRILISTDLLARGI 324
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 158 bits (400), Expect = 1e-38
Identities = 107/328 (32%), Positives = 162/328 (48%), Gaps = 12/328 (3%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
SFD +L + GF KP+ IQ +G G D+I A +G+GKT ++C +
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 101
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233
++ + LVLAPTRELA QI+K G ++ GG + R L
Sbjct: 102 QLDISLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVL 156
Query: 234 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
Q GV +++ TPGR+ D+L + VLDEAD ML GF+ QI I + Q
Sbjct: 157 QSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQ 216
Query: 294 TLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLE 353
++SAT P E ++ +++ P+++ + EL+ V V + K + L E
Sbjct: 217 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYE 276
Query: 354 TASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPI 413
T + Q +IF +T+R D +T +R+ A HGD QN RD ++ EFRSG S +
Sbjct: 277 TLAITQS---VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333
Query: 414 MVATDVAARGIGMLLKFNFFSIGLNFSL 441
++ TD+ ARGI + S+ +NF L
Sbjct: 334 LITTDLLARGIDV----QQVSLVINFDL 357
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 158 bits (399), Expect = 2e-38
Identities = 114/366 (31%), Positives = 182/366 (49%), Gaps = 24/366 (6%)
Query: 71 PVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDE--- 127
P + F PD SE+ E E E I P+ E F ++ + E
Sbjct: 80 PKLKNGFPHPEPD-CNPSEAASEESNSEIEQEI-------PVEQ-KEGAFSNFPISEETI 130
Query: 128 --VKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPL-LSPG 184
+K G IQ + + SG+D+I A TG+GKT S+ +P I ++ + G
Sbjct: 131 KLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRG 190
Query: 185 DGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATP 244
P VLVLAPTRELA Q+ K+ S + ++ C YGG P Q ++ G++IL+ TP
Sbjct: 191 RAPQVLVLAPTRELANQVSKDFSDI--TKKLSVACFYGGTPYGGQFERMRNGIDILVGTP 248
Query: 245 GRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQTLMWSA 299
GR+ D ++ GK +L ++ ++VLDE D+MLDMGF Q+ +I+ + QTL++SA
Sbjct: 249 GRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSA 308
Query: 300 TWPKEVKQLASDYLHDPI-QVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQD 358
T P V +A Y+ QV + + + + + + + +R + +
Sbjct: 309 TCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSG 368
Query: 359 QDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATD 418
+ IIF TK+ E++ + A ++HGD Q +R+ L FR+G ++VAT+
Sbjct: 369 HQGRTIIFCETKKEAQELSQNSAIK-QDAQSLHGDIPQKQREITLKGFRNGSFGVLVATN 427
Query: 419 VAARGI 424
VAARG+
Sbjct: 428 VAARGL 433
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 158 bits (399), Expect = 2e-38
Identities = 111/324 (34%), Positives = 181/324 (55%), Gaps = 20/324 (6%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
+++F E G ++ ++ G+ P+ IQ + P AL G+D+IG+A TGSGKT ++ +P
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 172 IVHI-----NAQPLLSPGDGP--IVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGV 224
+ + +++P P VL+PTRELA+QI ++ GA +R + GG+
Sbjct: 68 LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGI 127
Query: 225 PKSQQIRDLQRGVEILIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRK 283
+ QQ L G +ATPGRL D + K +LK + YLVLDEADR+L+ FE + +
Sbjct: 128 DRMQQTIAL--GKRPHVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQ 185
Query: 284 IVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFE 343
I+++I +R+T ++SAT K+V++L L +P++++ S + S T+ Q +
Sbjct: 186 ILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAAS-KYSTVDTLKQQYRFVAAKY 244
Query: 344 KRDRLAKHLETASQDQDSKIIIFASTKRTCDE---ITSYLRTEGWPALAIHGDKAQNERD 400
K L L S+ +S +IF RTCD + LR+ G+ A+ I G Q++R
Sbjct: 245 KDCYLVYIL---SEMPESTSMIFT---RTCDGTRFLALVLRSLGFRAIPISGQMTQSKRL 298
Query: 401 WVLAEFRSGRSPIMVATDVAARGI 424
L +F++G I+V TDVA+RG+
Sbjct: 299 GALNKFKAGECNILVCTDVASRGL 322
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 157 bits (397), Expect = 3e-38
Identities = 99/327 (30%), Positives = 166/327 (50%), Gaps = 9/327 (2%)
Query: 98 ENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVA 157
EN + DV + SF+E +L + G+ P+ +Q + GRD+I A
Sbjct: 7 ENVELTTSEDV-NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 158 ATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRN 217
+G+GKT ++ + + I+ LS D L+L+PTRELAVQIQ G ++
Sbjct: 66 QSGTGKTATFSIGILQSID----LSVRDTQ-ALILSPTRELAVQIQNVVLALGDHMNVQC 120
Query: 218 TCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGF 277
GG I+ L G ++ TPGR+ DM+ + V L+LDEAD +L+ GF
Sbjct: 121 HACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGF 180
Query: 278 EPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVE 337
+ QI I + P Q ++ SAT P++V ++ + + +P+++ + EL+ +
Sbjct: 181 KEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIA 240
Query: 338 VLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQN 397
V + K D L +T + Q +IF +++R D +T +R + ++HG+ Q
Sbjct: 241 VEKEEWKFDTLCDLYDTLTITQ---AVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQK 297
Query: 398 ERDWVLAEFRSGRSPIMVATDVAARGI 424
ERD ++ +FR G S +++ TD+ ARGI
Sbjct: 298 ERDAIMQDFRQGNSRVLICTDIWARGI 324
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 157 bits (396), Expect = 4e-38
Identities = 107/351 (30%), Positives = 172/351 (48%), Gaps = 36/351 (10%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
+F G +L + ++GF PT IQ + P+ L GRD++G+A TGSGKT ++ +P I
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233
H+ + S L+L+P RELA+Q K F + +R+ + GGV +Q L
Sbjct: 130 HLKSTLANS---NTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLL 186
Query: 234 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
+I++ATPGR + + K L + Y+V DEADR+ +MGF Q+ +I+ + RQ
Sbjct: 187 SGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQ 246
Query: 294 TLMWSATWPKEVKQLASDYLHDPIQVQIG-----SLELSASHTITQIVE-------VLTD 341
TL++SAT P+ + A L DP+ V++ S +L ++ + E +L D
Sbjct: 247 TLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQD 306
Query: 342 F--------------------EKRDR-LAKHLETASQDQDSKIIIFASTKRTCDEITSYL 380
+KR R L L+ + ++F TK + ++ L
Sbjct: 307 IIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELL 366
Query: 381 RTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGMLLKFN 431
G+ I+G Q R + FR G++ ++V TDVA+RGI + L N
Sbjct: 367 VQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLAN 417
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 156 bits (394), Expect = 7e-38
Identities = 102/314 (32%), Positives = 158/314 (49%), Gaps = 9/314 (2%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
+ +FD+ +L + GF KP+ IQ + + G D+I A +G+GKT ++ +
Sbjct: 32 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISI 91
Query: 172 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIR 231
+ + + + LVLAPTRELA QIQK G GG +++
Sbjct: 92 LQQLEIEFKETQA-----LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 146
Query: 232 DLQ-RGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
LQ I++ TPGR+ DML + K + VLDEAD ML GF+ QI +I ++
Sbjct: 147 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Query: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAK 350
Q + SAT P +V ++ ++ DPI++ + EL+ + V + K D L
Sbjct: 207 SIQVVFASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD 266
Query: 351 HLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGR 410
ET + Q +IF +T+R D +T + + A+HGD Q ERD ++ EFRSG
Sbjct: 267 LYETLTITQ---AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGS 323
Query: 411 SPIMVATDVAARGI 424
S +++ TD+ ARGI
Sbjct: 324 SRVLITTDLLARGI 337
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 153 bits (387), Expect = 4e-37
Identities = 110/400 (27%), Positives = 186/400 (46%), Gaps = 58/400 (14%)
Query: 89 ESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMAL 148
E +V E+ N + + H SF G VL+ +K++GF +PT IQ + P+ L
Sbjct: 117 EDDVNEYFSTNNLEKTKHKKG----SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLIL 172
Query: 149 SGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSK 208
RD++G+A TGSGKT ++ LP + + + S G ++L+P+RELA+Q
Sbjct: 173 QSRDIVGMARTGSGKTAAFILPMVEKLKSH---SGKIGARAVILSPSRELAMQTFNVFKD 229
Query: 209 FGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDE 268
F + +R+ + GG +Q + +++IATPGR + + +LK V Y+V DE
Sbjct: 230 FARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDE 289
Query: 269 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQI------- 321
ADR+ +MGF+ Q+ +++ + RQTL++SAT P + L +P+ V++
Sbjct: 290 ADRLFEMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVS 349
Query: 322 ------------GSLELSASHTITQIVEV-LTDFEKRDRLAKHLETASQDQDSK------ 362
E + + + +I+++ L E+ +L A D D +
Sbjct: 350 ENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKK 409
Query: 363 -------------------------IIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQN 397
I+F T+ + I+ LR G+ I+G Q+
Sbjct: 410 RRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQH 469
Query: 398 ERDWVLAEFRSGRSPIMVATDVAARGIGMLLKFNFFSIGL 437
R L FR+G + I+V TDVAARG+ + + N + L
Sbjct: 470 ARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVINYTL 509
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 152 bits (384), Expect = 1e-36
Identities = 104/322 (32%), Positives = 167/322 (51%), Gaps = 16/322 (4%)
Query: 113 RSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 172
+SF + G +++D +K +PT IQ L GR+ IG A TGSGKT ++ LP I
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 173 VHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRD 232
+ P G L+L PTRELA+QI ++ + GA+ +++ + GG+ +Q D
Sbjct: 67 EKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSID 121
Query: 233 LQRGVEILIATPGRLIDML----EIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI 288
L + +++ATPGRL D++ E L+R+ +LV+DEADR+L F + +
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVL 181
Query: 289 --RPDRQTLMWSATWPKEVKQLASDYLHD---PIQV-QIGSLELSASHTITQIVEVLTDF 342
DRQTL+++AT ++QL + P+ + ++ + +S T+ Q +
Sbjct: 182 PASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSY-IFVSS 240
Query: 343 EKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWV 402
+ R+ HL T ++ IIF + RT + I S LR +H + Q ER
Sbjct: 241 QVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINS 300
Query: 403 LAEFRSGRSPIMVATDVAARGI 424
L FR+ + I+VATDVA+RG+
Sbjct: 301 LGRFRAEAAKILVATDVASRGL 322
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 152 bits (384), Expect = 1e-36
Identities = 104/317 (32%), Positives = 169/317 (52%), Gaps = 3/317 (0%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
I SF + ++ + G+ PT IQ P+AL GRD+ G AATG+GKT +Y LP
Sbjct: 156 ITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPT 215
Query: 172 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIR 231
+ + +PL + VLVL PTREL Q+ + + + I GG+ Q
Sbjct: 216 LERLLYRPLNNKAITR-VLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEA 274
Query: 232 DLQRGVEILIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
L++ +I+IATPGRLID ++ + L + L+LDEADRMLD F Q+++I++
Sbjct: 275 VLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCK 334
Query: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAK 350
RQT+++SAT ++VK LA+ L PI+V + + + A + + + + D ++ DR
Sbjct: 335 TRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIRED-KEGDREPI 393
Query: 351 HLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGR 410
+ ++F TK+ + L G A +HG+ Q +R L +F+ +
Sbjct: 394 LASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQ 453
Query: 411 SPIMVATDVAARGIGML 427
+++ATDVAARG+ ++
Sbjct: 454 IDVLIATDVAARGLDIV 470
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 152 bits (383), Expect = 1e-36
Identities = 124/374 (33%), Positives = 194/374 (51%), Gaps = 21/374 (5%)
Query: 65 EELP-NLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDV------PKPIRSFDE 117
EELP + +E+ E D ESE E ENE V I F +
Sbjct: 34 EELPQDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDIEKFSD 93
Query: 118 AGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINA 177
+ +K+ GF T IQ + P L+GRD++G A TGSGKTL++ +P I + A
Sbjct: 94 LQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYA 153
Query: 178 QPLLSPGDGPIVLVLAPTRELAVQI---QKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ 234
P +G V++++PTRELA+QI KE K+ + V GG + + L
Sbjct: 154 LK-FKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQT---FGIVIGGANRRAEADKLV 209
Query: 235 RGVEILIATPGRLIDMLEIGKTNL-KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP--D 291
+GV +L+ATPGRL+D L+ K + + + LV+DEADR+L++GFE ++R+I+ +I P +
Sbjct: 210 KGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIM-KILPSEN 268
Query: 292 RQTLMWSATWPKEVKQLASDYLH-DPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAK 350
RQTL++SAT +V+ LA L P+ V + S + +++ + V+ D +KR L
Sbjct: 269 RQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLL- 327
Query: 351 HLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGR 410
++ K+I+F S+ + + L P L +HG + Q R EF +
Sbjct: 328 -FSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAE 386
Query: 411 SPIMVATDVAARGI 424
I++ T+VAARG+
Sbjct: 387 KGILLCTNVAARGL 400
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 150 bits (380), Expect = 3e-36
Identities = 108/343 (31%), Positives = 175/343 (50%), Gaps = 10/343 (2%)
Query: 88 SESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSY-----VLDEVKQEGFAKPTGIQCQ 142
SE + E K+N G D K + + + F S +L + GF PT IQ +
Sbjct: 230 SEEDEEEIAKKNAFFAEG-DKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDK 288
Query: 143 GWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQI 202
P+AL G+D++G A TGSGKT ++ +P + + +P P VL+L PTRELA+Q
Sbjct: 289 TIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTR--VLILCPTRELAMQC 346
Query: 203 QKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKT-NLKRV 261
+K + + I GG+ Q ++L++ +I+IATPGR ID + + ++ +
Sbjct: 347 HSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENI 406
Query: 262 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQI 321
+V+DEADRML+ GF ++ +I+ RQT+++SAT +V L L+ P++V +
Sbjct: 407 EIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFV 466
Query: 322 GSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLR 381
+ + +A + V V E R A + + + IIF +K ++
Sbjct: 467 DNKKTTAKLLTQEFVRVRPQRELL-RPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFG 525
Query: 382 TEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
A IHG +Q +R L +FR G+ ++ATDVA+RGI
Sbjct: 526 LLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGI 568
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 150 bits (380), Expect = 3e-36
Identities = 98/332 (29%), Positives = 167/332 (49%), Gaps = 5/332 (1%)
Query: 100 EMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAAT 159
EM + + K F G V + ++G+ PT IQ + P+ L G+D++ +A T
Sbjct: 83 EMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMART 142
Query: 160 GSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTC 219
GSGKT + LP + S G L+L+PTRELA+Q K + G + ++
Sbjct: 143 GSGKTACFLLPMFERLKTH---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTAL 199
Query: 220 VYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEP 279
+ GG Q L +I+IATPGRL+ + L+ V Y+V DEADR+ +MGF
Sbjct: 200 ILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAE 259
Query: 280 QIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVL 339
Q+++I+ ++ QT+++SAT PK + + A L +P+ +++ ++ + + ++
Sbjct: 260 QLQEIIARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRL-DVDTKLNEQLKTSFFLV 318
Query: 340 TDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNER 399
+ K L L + QD + ++F +TK + +T L T+ I+ R
Sbjct: 319 REDTKAAVLLHLLHNVVRPQD-QTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTAR 377
Query: 400 DWVLAEFRSGRSPIMVATDVAARGIGMLLKFN 431
LA+F G+ ++ TD+AARG+ + L N
Sbjct: 378 KINLAKFTLGKCSTLIVTDLAARGLDIPLLDN 409
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 150 bits (378), Expect = 5e-36
Identities = 114/359 (31%), Positives = 187/359 (51%), Gaps = 19/359 (5%)
Query: 74 EKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGF 133
+K ++ D SE E +E KE E + + ++F+ +K+ GF
Sbjct: 117 KKKKKKQRKDTEAKSEEEEVE-DKEEEKKLEETSIMTN-KTFESLSLSDNTYKSIKEMGF 174
Query: 134 AKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLA 193
A+ T IQ + P + G D++G A TGSGKTL++ +P V + + +P +G VLV+
Sbjct: 175 ARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVIC 233
Query: 194 PTRELAVQ---IQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDM 250
PTRELA+Q + KE K+ + + + V GG + + L +GV +L+ATPGRL+D
Sbjct: 234 PTRELAIQSYGVAKELLKYHSQTVGK---VIGGEKRKTEAEILAKGVNLLVATPGRLLDH 290
Query: 251 LEIGKTN---LKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQ 307
LE TN K + +LV+DEADR+L+ FE ++KI++ + RQT ++SAT +V+
Sbjct: 291 LE--NTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVED 348
Query: 308 LASDYLHDPIQVQI--GSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIII 365
LA L P+ + + G E++ + + Q V+ + L L+ + KI++
Sbjct: 349 LARVSLTSPVYIDVDEGRKEVT-NEGLEQGYCVVPSAMRLLFLLTFLKRFQGKK--KIMV 405
Query: 366 FASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
F ST ++ R + L I G QN+R +F + I++ T+VAARG+
Sbjct: 406 FFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGL 464
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 149 bits (375), Expect = 1e-35
Identities = 118/405 (29%), Positives = 196/405 (48%), Gaps = 67/405 (16%)
Query: 76 NFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQE-GFA 134
+ ++ +PD+ ++ V++ +E T + +F E G +++ + +
Sbjct: 203 SLFKNNPDIPELHRP-VVKQVQEKVFTSA---------AFHELGLHPHLISTINTVLKMS 252
Query: 135 KPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINA-QPLLSPGDGPIVLVLA 193
T +Q Q P+ L GRD + + TGSGKTL+YC+P + + A + + DGP LVL
Sbjct: 253 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLV 312
Query: 194 PTRELAVQ----IQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLID 249
PTRELA+Q +QK F + I + GG + + L++G+ ILI+TPGRL+D
Sbjct: 313 PTRELALQSFDTVQKLLKPF---TWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVD 369
Query: 250 MLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD---RQTLMWSATWPKEV 305
++ K + R+ +LV DEADR+LD+GFE I I++ + + RQ ++ SAT + V
Sbjct: 370 HIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGV 429
Query: 306 KQLASDYLHDPIQVQI---GSLELSASHTITQIV------EVLTDFEKRDRLAKH----- 351
+LA LHDP+ + + +L+ Q V + L F + L +H
Sbjct: 430 TRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVP 489
Query: 352 ------------LETASQDQDSKIIIFASTKRTCD-----EITSYLRTEGWPA------- 387
L+ ++D K+++F S+ + + + L + G PA
Sbjct: 490 SKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSA 549
Query: 388 ------LAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGM 426
L +HG Q ER V EF R +++ TDVAARG+ +
Sbjct: 550 SMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDL 594
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 148 bits (374), Expect = 1e-35
Identities = 95/315 (30%), Positives = 162/315 (51%), Gaps = 17/315 (5%)
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
+L + ++GF KP+ IQ + P+AL+G D++ A G+GKT ++C+P + I+ P
Sbjct: 165 LLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKID------P 218
Query: 184 GDGPI-VLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIA 242
+ I ++L PTRELA+Q + C + +I GG I L + V +L+
Sbjct: 219 ENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVG 278
Query: 243 TPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 302
TPGR++D+ + G LK LV+DEAD++L + F+P I +++ + RQ LM+SAT+P
Sbjct: 279 TPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFP 338
Query: 303 KEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSK 362
VK YL P + L T+ + + E+R ++ S+ Q ++
Sbjct: 339 VTVKSFKDRYLKKPY-----IINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQ 393
Query: 363 IIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAAR 422
IIF ++ + + + G+ IH Q+ R+ V +FR+G +V TD+ R
Sbjct: 394 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTR 453
Query: 423 GI-----GMLLKFNF 432
GI +++ F+F
Sbjct: 454 GIDIQAVNVVINFDF 468
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 147 bits (372), Expect = 2e-35
Identities = 94/315 (29%), Positives = 162/315 (50%), Gaps = 17/315 (5%)
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
+L + ++GF KP+ IQ + P+AL+G D++ A G+GKT ++C+P + I+ P
Sbjct: 135 LLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKID------P 188
Query: 184 GDGPI-VLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIA 242
+ I ++L PTRELA+Q + C + I+ GG I L + V +L+
Sbjct: 189 NNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVG 248
Query: 243 TPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 302
TPGR++D+ + G LK LV+DEAD++L F+P + +++ + +RQ LM+SAT+P
Sbjct: 249 TPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFP 308
Query: 303 KEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSK 362
VK +L P + L T+ + + E+R ++ S+ Q ++
Sbjct: 309 VTVKAFKDRHLRKPYVI-----NLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQ 363
Query: 363 IIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAAR 422
IIF ++ + + + G+ IH Q+ R+ V EFR+G +V TD+ R
Sbjct: 364 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTR 423
Query: 423 GI-----GMLLKFNF 432
GI +++ F+F
Sbjct: 424 GIDIQAVNVVINFDF 438
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 147 bits (371), Expect = 3e-35
Identities = 95/339 (28%), Positives = 176/339 (51%), Gaps = 19/339 (5%)
Query: 89 ESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMAL 148
E + ++F+ ++ +S +F+ +L + GF P+ IQ + +
Sbjct: 7 EDQKLKFKTSKKLKVSS--------TFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQII 58
Query: 149 SGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSK 208
SG+D+I A +G+GKT ++ + + I+ + L+L+PTRELA QI +
Sbjct: 59 SGKDVIAQAQSGTGKTATFTIGLLQAIDLRK-----KDLQALILSPTRELASQIGQVVKN 113
Query: 209 FGASSRIRNTCVYGGVPKSQQIRDLQR-GVEILIATPGRLIDMLEIGKTNLKRVTYLVLD 267
G + + GG ++ +Q+ G + + TPGR++DM++ + V LVLD
Sbjct: 114 LGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLD 173
Query: 268 EADRMLD--MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLE 325
EAD +L +GF+ QI I ++ + Q ++ SAT K++ ++ +++DP+++ + E
Sbjct: 174 EADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDE 233
Query: 326 LSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGW 385
+S +V V + K D L ++ + Q +IF +TK+ D ++ L +
Sbjct: 234 ISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQ---CVIFCNTKKKVDWLSQRLIQSNF 290
Query: 386 PALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+++HGD Q ERD V+ +FR+G S ++++TDV ARGI
Sbjct: 291 AVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGI 329
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 147 bits (370), Expect = 4e-35
Identities = 113/362 (31%), Positives = 182/362 (50%), Gaps = 33/362 (9%)
Query: 88 SESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSY-----------------------V 124
SE E E KE E ++V KP DE+ PS
Sbjct: 136 SEEESAETTKETE-----NNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENT 190
Query: 125 LDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPG 184
L +K+ GF T IQ + L GRD++ A TGSGKTL++ +P + I ++
Sbjct: 191 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTR- 249
Query: 185 DGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATP 244
+G VL+L+PTRELA+Q + + GG +S + + L G+ I++ATP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 309
Query: 245 GRLIDMLEIGKTNL-KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 303
GRL+D ++ + K + LV+DEADR+LD+GFE ++++I+ + RQT+++SAT +
Sbjct: 310 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 369
Query: 304 EVKQLASDYL-HDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSK 362
+V+ LA L +P+ V + + +A+ + V+ EKR L +++ K
Sbjct: 370 KVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLL--FTFLKKNRKKK 427
Query: 363 IIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAAR 422
+++F S+ + L P LAIHG + QN+R +F + S ++ TDVAAR
Sbjct: 428 LMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAAR 487
Query: 423 GI 424
G+
Sbjct: 488 GL 489
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 146 bits (369), Expect = 5e-35
Identities = 105/347 (30%), Positives = 167/347 (47%), Gaps = 10/347 (2%)
Query: 79 QEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTG 138
+E V M + E E + I G + + +FD +K+ GF T
Sbjct: 61 EEEEKVEAMEDGE-----DEKNIVIVGKGIMTNV-TFDSLDLSEQTSIAIKEMGFQYMTQ 114
Query: 139 IQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTREL 198
IQ L G+D++G A TGSGKTL++ +P V + + SP +G V+V+ PTREL
Sbjct: 115 IQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPA-VELLFKERFSPRNGTGVIVICPTREL 173
Query: 199 AVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNL 258
A+Q + + + V GG + + + + G ++IATPGRL+D L+ K +
Sbjct: 174 AIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFI 233
Query: 259 -KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPI 317
K + LV+DEADR+L+ FE + KI+ + RQT ++SAT +VK LA L P+
Sbjct: 234 YKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPV 293
Query: 318 QVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEIT 377
V + T + + + RL + ++ + KI++F ST ++ T
Sbjct: 294 HVDVDDGRRKV--TNEGLEQGYCVVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQFHT 351
Query: 378 SYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
++ IHG QN R +F + I++ TDVAARG+
Sbjct: 352 EIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGL 398
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 146 bits (368), Expect = 7e-35
Identities = 101/320 (31%), Positives = 167/320 (51%), Gaps = 17/320 (5%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
+F+ VL + G+ KP+ IQ P+AL G+D+I A TGSGKT ++ +P I
Sbjct: 232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 291
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQ---KECSKFGASSRIRNTCVYGGVPKSQQI 230
+ +P V+VL PTRELA+Q+ K+ ++F S I GG+ QQ
Sbjct: 292 RLLYKPAKIASTR--VIVLLPTRELAIQVADVGKQIARF--VSGITFGLAVGGLNLRQQE 347
Query: 231 RDLQRGVEILIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
+ L+ +I+IATPGR ID + + N+ V LV+DEADRML+ GF+ ++ +I+ +
Sbjct: 348 QMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLP 407
Query: 290 PDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLA 349
+RQ L++SAT ++K L S L P+++ I + +A T++ + KRD L
Sbjct: 408 SNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAA----TKLTQEFVRIRKRDHLK 463
Query: 350 KHL-----ETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLA 404
L +I++F + K T + + G +HG Q +R +
Sbjct: 464 PALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVN 523
Query: 405 EFRSGRSPIMVATDVAARGI 424
+F++ P+++ TD+A+RG+
Sbjct: 524 KFKNLEVPVLICTDLASRGL 543
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 145 bits (367), Expect = 9e-35
Identities = 119/376 (31%), Positives = 184/376 (48%), Gaps = 21/376 (5%)
Query: 65 EELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYV 124
++LP+ +++ + P + + + ++ ++ K + D FD+
Sbjct: 311 DDLPSEDSSDEDDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKTRFDQFPLSPLS 370
Query: 125 LDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPG 184
L +K GF T +Q P+ L G+D++ A TG+GKT+++ LP I + P S
Sbjct: 371 LKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRD 430
Query: 185 DGP---IVLVLAPTRELAVQIQKECS---KFGASSRIRNTCVYGGVPKSQQIRDLQRG-V 237
IVLV+ PTRELA Q E + K+ S ++ V GG + R +Q
Sbjct: 431 SRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQ--VVIGGTKLPTEQRRMQTNPC 488
Query: 238 EILIATPGRLIDMLEIGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 294
+IL+ATPGRL D +E T L V LVLDEAD +LDMGF I +I+ + RQT
Sbjct: 489 QILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQT 548
Query: 295 LMWSATWPKEVKQLASDYL---HDPIQ-VQIGSLELSASHTITQIVEVLTDFEKRDRLAK 350
++SAT P+EV+Q+ L H+ I VQ GS E +H + ++ ++ L
Sbjct: 549 FLFSATVPEEVRQICHVALKRDHEFINCVQEGSGE---THQKVTQMYMIASLDRHFSLLH 605
Query: 351 HL--ETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRS 408
L E + + D K+IIF +T + L IH K Q+ R V EFR
Sbjct: 606 VLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRK 665
Query: 409 GRSPIMVATDVAARGI 424
++ I+V +DV+ARG+
Sbjct: 666 SKAIILVTSDVSARGV 681
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 145 bits (366), Expect = 1e-34
Identities = 104/318 (32%), Positives = 168/318 (52%), Gaps = 11/318 (3%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
+R F + +K + T +Q P AL GRD++G A TGSGKTL++ +P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 172 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIR 231
+ ++ + SP DG ++++PTRELA Q +K G + + GG +
Sbjct: 130 LEKLHRERW-SPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEK 188
Query: 232 DLQRGVEILIATPGRLID-MLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
+ + IL+ PGRL+ M E ++ L+LDEADR+LD F+ Q+ I+ Q+
Sbjct: 189 ERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPK 248
Query: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHT-ITQIVEVLTDFEKRDRLA 349
RQTL++SAT K+VK LA L DP + + + ++A+ T + Q V ++ +K D L
Sbjct: 249 HRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLW 308
Query: 350 KHLETASQDQDSKIIIFASTKRT---CDEITSYLRTEGWPALAIHGDKAQNERDWVLAEF 406
++T +S+I++F STK+ E + LR G P ++HG +Q +R V ++F
Sbjct: 309 SFIKT---HLNSRILVFLSTKKQVKFVHEAFNKLR-PGIPLKSLHGKMSQEKRMGVYSQF 364
Query: 407 RSGRSPIMVATDVAARGI 424
R ++ TDV ARG+
Sbjct: 365 IE-RQSVLFCTDVLARGL 381
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 145 bits (366), Expect = 1e-34
Identities = 95/302 (31%), Positives = 164/302 (53%), Gaps = 5/302 (1%)
Query: 125 LDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPG 184
L +K+ GF + T IQ + L GRD++G A TGSGKTL++ +P + IN + P
Sbjct: 182 LRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFM-PR 240
Query: 185 DGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATP 244
+G V++++PTREL++Q + A V GG + + L +G+ IL+ATP
Sbjct: 241 NGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATP 300
Query: 245 GRLIDMLEIGKTNL-KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 303
GRL+D L+ L K + L++DE DR+L++GFE ++++I++ + RQT+++SAT
Sbjct: 301 GRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTA 360
Query: 304 EVKQLASDYL-HDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSK 362
++ L+ L +PI V + + +A+ + ++ EK RL +++ K
Sbjct: 361 RIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEK--RLLVLFTFLKKNRKKK 418
Query: 363 IIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAAR 422
+++F S+ + P +IHG + Q +R +F + S I++ TDVAAR
Sbjct: 419 VMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAAR 478
Query: 423 GI 424
G+
Sbjct: 479 GL 480
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 145 bits (365), Expect = 2e-34
Identities = 108/359 (30%), Positives = 180/359 (50%), Gaps = 24/359 (6%)
Query: 91 EVIEFRKENEMTISGHDVPKPIRSFDEA----GFPSYVLDEVKQEGFAKPTGIQCQGWPM 146
E RK + +SG D+P PI SF++ F +L+ + + GF +PT IQC+ P+
Sbjct: 96 EASALRKSYKGNVSGIDIPLPIGSFEDLISRFSFDKRLLNNLIENGFTEPTPIQCECIPV 155
Query: 147 ALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKEC 206
AL+ RD++ TGSGKTL++ +P + I + G L+++PT+ELA QI EC
Sbjct: 156 ALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKG---LIISPTKELANQIFIEC 212
Query: 207 SKFGASSRIRN---------TCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTN 257
K + + G K++ + D + +I+I+TP RLID+++ +
Sbjct: 213 FKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSD--KKYDIIISTPLRLIDVVKNEALD 270
Query: 258 LKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR-PDRQTLMWSATWPKEVKQLASDYLHDP 316
L +V +L+ DEAD++ D F Q I+ R P + M+SAT P V+++A + DP
Sbjct: 271 LSKVKHLIFDEADKLFDKTFVEQSDDILSACREPSLRKAMFSATIPSNVEEIAQSIMMDP 330
Query: 317 IQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEI 376
++V IG E A++T + + E+ +A + IIIF + +
Sbjct: 331 VRVIIGHKE--AANTNIEQKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFLESITRAKAL 388
Query: 377 TSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI---GMLLKFNF 432
L + IH ++ +RD ++ F++G ++ TDV ARGI G+ L N+
Sbjct: 389 YHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINY 447
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 145 bits (365), Expect = 2e-34
Identities = 98/302 (32%), Positives = 158/302 (51%), Gaps = 5/302 (1%)
Query: 125 LDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPG 184
L+ +K + KPT IQ +L+G D++G A TGSGKTL+ +P ++ + SP
Sbjct: 88 LEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIP-VLEALWRAKWSPD 146
Query: 185 DGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATP 244
G L+++PTRELA+Q + GA V GG + + R+ G+ I++ TP
Sbjct: 147 YGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFE-RNRISGINIIVCTP 205
Query: 245 GRLID-MLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 303
GRL+ M E + + + LVLDEADRMLDMGF Q+ I++ + +RQTL++SAT +
Sbjct: 206 GRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQTLLFSATQTR 265
Query: 304 EVKQLASDYLHDPIQVQIGSLELSAS-HTITQIVEVLTDFEKRDRLAKHLETASQDQDSK 362
VK L +DP+ V + +A+ + Q ++ + K + L +E + +
Sbjct: 266 NVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIEAHRKKKSLV 325
Query: 363 IIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAAR 422
+ R E S LR G P + + G Q +R +F ++ +++ATDVA+R
Sbjct: 326 FVSSCKQARFLTEAFSQLR-PGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASR 384
Query: 423 GI 424
G+
Sbjct: 385 GL 386
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 143 bits (360), Expect = 6e-34
Identities = 94/259 (36%), Positives = 134/259 (51%), Gaps = 50/259 (19%)
Query: 173 VHINAQPLLSP---GDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQ 229
+ + PL +P GDGPI ++L PTRELA+Q KE +KF ++ C YGGV S+Q
Sbjct: 100 IEVRENPLEAPLEEGDGPIAVILTPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQ 159
Query: 230 IRDLQRGVEILIATPGRLIDMLEIGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKIVD 286
I DL+RG EI++ TPGR+ID+L TNL+RVTYLVLDEADRM GFEP
Sbjct: 160 IADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKGFEP------- 212
Query: 287 QIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRD 346
Q+G + S ITQ + + +K
Sbjct: 213 ---------------------------------QVGGKSVVCS-DITQNAVICAEHQKFL 238
Query: 347 RLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALA-IHGDKAQNERDWVLAE 405
+L + L + S I+F + D+I L G+ ++A +HG Q++RD +A+
Sbjct: 239 KLLELLGMYYDEGSS--IVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIAD 296
Query: 406 FRSGRSPIMVATDVAARGI 424
F++G ++VAT VAARG+
Sbjct: 297 FKTGVIKVLVATSVAARGL 315
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 143 bits (360), Expect = 6e-34
Identities = 102/356 (28%), Positives = 172/356 (47%), Gaps = 27/356 (7%)
Query: 87 MSESEVIEFRKENEMT------ISGHDVPKP---IRSFDEAGFPSY-----VLDEVKQEG 132
M E +++++ +E E + G D K S +GF + +L + G
Sbjct: 1 MEEEQLLDYEEEQEEIQDKQPEVGGGDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCG 60
Query: 133 FAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI-VLV 191
F P+ +Q + P A+ G D++ A +G GKT + + + L P DG + V+
Sbjct: 61 FEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQ------LEPVDGEVSVVC 114
Query: 192 LAPTRELAVQIQKECSKFGAS-SRIRNTCVYGGVP-KSQQIRDLQRGVEILIATPGRLID 249
+ TRELA QI KE +F ++ +GG+ K + R I++ TPGR++
Sbjct: 115 MCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLA 174
Query: 250 MLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308
+ GK L +V Y VLDE D+M+ D +++IV +Q +M+SAT PKE++ +
Sbjct: 175 LARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTV 234
Query: 309 ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAS 368
++ DP++V + H + Q L + EK RL L+ +Q ++IF
Sbjct: 235 CKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQ---VVIFVK 291
Query: 369 TKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ C+ + L + +P++AIH AQ ER F+ + I+VATD+ RG+
Sbjct: 292 AVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGM 347
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 142 bits (359), Expect = 8e-34
Identities = 88/310 (28%), Positives = 158/310 (50%), Gaps = 10/310 (3%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
++ G +L ++ G+ P+ +Q P L G++++ + G+GKT SY +P +
Sbjct: 110 WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNM 169
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ 234
IN+ L G ++L P RELA+QI + + + + + V GG I +
Sbjct: 170 INSSELSIQG-----IILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVS 224
Query: 235 RGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 294
GV +++ TPGR++D++E L + LV DEAD++LD+ F + K++D + ++Q
Sbjct: 225 NGVHVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDLLPREKQM 284
Query: 295 LMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLET 354
L++SAT+P V Y+ +P+ + + ++ A + Q + EK L L
Sbjct: 285 LLYSATFPYFVTGFIRRYMKNPLCINL--MKELAPVGVKQFYTYVKPSEKLLCLKSLLLR 342
Query: 355 ASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIM 414
S +Q +IF ++ +T + + + G P+ IH AQ +R+ V F G+ I+
Sbjct: 343 LSINQ---CVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKIL 399
Query: 415 VATDVAARGI 424
VATD+ RG+
Sbjct: 400 VATDLITRGV 409
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 142 bits (359), Expect = 8e-34
Identities = 116/350 (33%), Positives = 176/350 (50%), Gaps = 25/350 (7%)
Query: 95 FRKEN----EMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG 150
F KEN + T + +D FD L +K G+ T +Q P+ L G
Sbjct: 32 FDKENVIEADKTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKG 91
Query: 151 RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDG--PIV-LVLAPTRELAVQIQKECS 207
+D++ A TG+GKT+++ LP I + P SP + PI+ LV+ PTRELA Q E +
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEAN 151
Query: 208 ---KFGASSRIRNTCVYGGVPKSQQIRDLQRG-VEILIATPGRLIDMLEIGK---TNLKR 260
K+ S ++ V GG + + +Q +IL+ATPGRL D +E T LK
Sbjct: 152 TLLKYHPSIGVQ--VVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKG 209
Query: 261 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYL---HDPI 317
V LVLDEAD +LDMGF I +I+ + +RQT ++SAT P+EV+Q+ L H+ +
Sbjct: 210 VKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFV 269
Query: 318 Q-VQIGSLELSASHTITQIVEVLTDFEKRDRLAKHL--ETASQDQDSKIIIFASTKRTCD 374
V G++E +H + + ++ ++ L L E + D K+I+F +T
Sbjct: 270 NCVHEGTIE---THQQVRQMHMIASLDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTK 326
Query: 375 EITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ L IH K Q+ R V EFR + I+V +DV+ARG+
Sbjct: 327 LVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGV 376
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 142 bits (358), Expect = 1e-33
Identities = 95/356 (26%), Positives = 178/356 (49%), Gaps = 32/356 (8%)
Query: 100 EMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAAT 159
++ I+ + K + + G V ++++GF +PT IQ + P + G+D++ ++ T
Sbjct: 11 QLQINQNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRT 70
Query: 160 GSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTC 219
GSGKT ++ +P + + + G L+++PTRELA+Q K + G + +R C
Sbjct: 71 GSGKTAAFVIPMLQKLKRRDTT----GIRALMVSPTRELALQTFKVVKELGRFTGLRCAC 126
Query: 220 VYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEP 279
+ GG +Q + +IL+ATPGRL+ ++ L V Y+V DEADR+ +MGF+
Sbjct: 127 LVGGDQIEEQFSTIHENPDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQD 186
Query: 280 QIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIV--- 336
Q+ + + +I RQTL++SAT PK + A L DP+ V++ ++ S ++ +
Sbjct: 187 QLTETLKRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRL-DVDEKVSDKLSMVFCMC 245
Query: 337 -------------------EVLTDFEKRDRLAKH----LETASQDQDSK-IIIFASTKRT 372
++L K+ +++K L+ D+++K ++F +T +
Sbjct: 246 RPDEKLFALLHLCRNFCFKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKH 305
Query: 373 CDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGMLL 428
+ + L G ++ R + +F ++ I+V TDVAARG+ + L
Sbjct: 306 VEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPL 361
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 141 bits (356), Expect = 2e-33
Identities = 103/347 (29%), Positives = 179/347 (50%), Gaps = 6/347 (1%)
Query: 80 EHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGI 139
E D ++ E + + + +E +S S E + +L V+ GF T I
Sbjct: 36 EEEDEEEVEEEQKHQTEESSETKVSEFLTKTTFASL-EGKVNANLLKAVQGLGFTTMTEI 94
Query: 140 QCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELA 199
Q + L G+D++ A TGSGKTL++ LP I ++ +G V++++PTREL+
Sbjct: 95 QAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNW-KQHNGTGVIIVSPTRELS 153
Query: 200 VQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLK 259
+Q S+ S + V GG +S + L +GV IL+ATPGRL+D L+ L
Sbjct: 154 MQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLV 213
Query: 260 R-VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLH-DPI 317
R + L++DEADR+LD+GFE ++++++ + RQ++++SAT +V +L LH +P+
Sbjct: 214 RNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSNPV 273
Query: 318 QVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEIT 377
+V + A+ Q ++ +K RL +++ K+++F S+ +
Sbjct: 274 RVSVHEKAEEATVEGLQQGYIVAPSDK--RLLLLFTFLKKNKTKKVMVFFSSCNSVKFHH 331
Query: 378 SYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
L P ++IHG + Q +R +F + I++ TDVAARG+
Sbjct: 332 ELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGL 378
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 141 bits (355), Expect = 2e-33
Identities = 87/308 (28%), Positives = 160/308 (51%), Gaps = 15/308 (4%)
Query: 130 QEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIV 189
++G+ KP+ IQ +AL+G+D++ A G+GKT +YC+P I I QP L
Sbjct: 60 EKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKI--QPALKAIQA--- 114
Query: 190 LVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLID 249
+V+ PTRELA+Q + C + +++ GG I L V ++IATPGR++D
Sbjct: 115 MVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILD 174
Query: 250 MLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLA 309
++E G ++ LVLDEAD++L F+ + ++++ + +RQ +++SAT+P V
Sbjct: 175 LMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFM 234
Query: 310 SDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAST 369
++H P ++ L T+ + + +++ ++ + Q ++ IIF ++
Sbjct: 235 QKHMHKPYEI-----NLMEELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNS 289
Query: 370 KRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI----- 424
+ + + + G+ IH AQN R+ V +FR G +V +D+ RGI
Sbjct: 290 TQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAV 349
Query: 425 GMLLKFNF 432
+++ F+F
Sbjct: 350 NVVINFDF 357
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 140 bits (354), Expect = 3e-33
Identities = 104/312 (33%), Positives = 161/312 (51%), Gaps = 19/312 (6%)
Query: 125 LDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPG 184
L +++ F K T IQ P++L G D++ A TGSGKTL++ +P I + + +
Sbjct: 53 LKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKW-TEF 111
Query: 185 DGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATP 244
DG L+++PTRELA+QI + +K G+ + V GG ++ + R + ILI TP
Sbjct: 112 DGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR-INILIGTP 170
Query: 245 GRLIDMLE--IGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 302
GR++ L+ +G N + LVLDEADR LDMGF+ + IV + P RQTL++SAT
Sbjct: 171 GRILQHLDQAVG-LNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQS 229
Query: 303 KEVKQLA----SDY----LHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLET 354
+ V LA +DY HD + + E S T+ Q + +K D L +++
Sbjct: 230 QSVADLARLSLTDYKTVGTHDVMDGSVNK-EASTPETLQQFYIEVPLADKLDILFSFIKS 288
Query: 355 ASQDQDSKIIIFASTKRTCDEITSYLR--TEGWPALAIHGDKAQNERDWVLAEFRSGRSP 412
+ K+I+F S+ + + R G + +HG + Q R L +F +
Sbjct: 289 HLK---CKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQV 345
Query: 413 IMVATDVAARGI 424
+ ATDV ARGI
Sbjct: 346 CLFATDVVARGI 357
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 140 bits (354), Expect = 3e-33
Identities = 104/324 (32%), Positives = 159/324 (48%), Gaps = 23/324 (7%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F G ++ + ++ +PT IQ P L GRD IG A TGSGKT+++ P +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ 234
+ P G +VL PTRELA+QI ++ + G+S IR + + GG QQ DLQ
Sbjct: 64 WSEDP-----SGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQ 118
Query: 235 RGVEILIATPGRLI-DMLEIGKT---NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
R +IATPGRL ++ G L R YLVLDEAD +L F + + + P
Sbjct: 119 RKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPP 178
Query: 291 --DRQTLMWSATWPKEVKQLASDYLHDPIQ--------VQIGSLELSASHTITQIVEVLT 340
RQTL+++AT +VK L + P+Q Q+ S++ A + +I +L
Sbjct: 179 KDKRQTLLFTATITDQVKSLQ----NAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILV 234
Query: 341 DFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERD 400
++ L T + ++ IIF + T + + L+ ++H Q ER
Sbjct: 235 PEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERT 294
Query: 401 WVLAEFRSGRSPIMVATDVAARGI 424
L FR+ + I++ATDVA+RG+
Sbjct: 295 NSLHRFRANAARILIATDVASRGL 318
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 140 bits (354), Expect = 3e-33
Identities = 91/311 (29%), Positives = 156/311 (49%), Gaps = 11/311 (3%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F + ++ +++G +PT +Q Q P L G D+I V+ TGSGKTL++ LP + H
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ 234
LL LV+APTREL+ QI EC ++ +R + GG + Q L
Sbjct: 63 -----LLQKNRSFYCLVVAPTRELSSQI-AECFNMFQATGLRVCLLVGGANFNVQANQLS 116
Query: 235 RGVEILIATPGRLID-MLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
+ +++ TPGR+ + +L+ +RV VLDEADR + F + I+ +R RQ
Sbjct: 117 KRPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQ 176
Query: 294 TLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLE 353
TL+++AT E+ +L+S L P ++ T+ + E + + + +E
Sbjct: 177 TLLFTATMSDEISKLSSSILKRPKTIRTA----EKYETVPALKEYYLFVAMKWKNSALVE 232
Query: 354 TASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPI 413
Q +I+F S T ++ L G+ + A+HG+ +Q +R+ + F+ R +
Sbjct: 233 LLEMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNV 292
Query: 414 MVATDVAARGI 424
+V TD+ +RG+
Sbjct: 293 LVCTDLGSRGL 303
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 140 bits (354), Expect = 3e-33
Identities = 113/388 (29%), Positives = 181/388 (46%), Gaps = 45/388 (11%)
Query: 79 QEHPDVAQMSESE----VIEFRK--------ENE----MTISGHDVPKPIR-SFDEAGFP 121
+E DV Q+ E V E RK ENE I G + + SF++
Sbjct: 97 EEEDDVQQLGGKETRDTVREKRKSGKSKKSQENEDFFSALIDGKSLDTSVNVSFEQMNLS 156
Query: 122 SYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLL 181
+L G++ PT IQ P+AL+G+D+ AATG+GKT ++ LP + + +P
Sbjct: 157 RQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRP-- 214
Query: 182 SPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILI 241
VLVL PTRELA+Q+ + K ++ GG+ Q L+ G ++++
Sbjct: 215 KGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVV 274
Query: 242 ATPGRLIDMLEIG-------------------KTNLKRVT------YLVLDEADRMLDMG 276
ATPGRLID L K N +++ LVLDEADRML+
Sbjct: 275 ATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRMLEEA 334
Query: 277 FEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIV 336
F Q+ +++ +RQTL++SAT +E+ +LAS L P+++ I +A + +
Sbjct: 335 FRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFI 394
Query: 337 EVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQ 396
+ E DR A ++ + I+F TK+ C + L G + Q
Sbjct: 395 RIRAGRE-TDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQ 453
Query: 397 NERDWVLAEFRSGRSPIMVATDVAARGI 424
+R L++F+ ++V+TD+A+RG+
Sbjct: 454 GQRIESLSKFKKAEIDVLVSTDLASRGL 481
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 140 bits (354), Expect = 3e-33
Identities = 91/323 (28%), Positives = 166/323 (51%), Gaps = 15/323 (4%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F+E +L + ++G+ +P+ IQ P+ALSG+D++ A G+GKT +YC+P +
Sbjct: 59 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 118
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ 234
I+ D LV+ PTRELA+Q + C + IR GG I +
Sbjct: 119 IDPTK-----DYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIY 173
Query: 235 RGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 294
+ V+++IATPGR++D+++ ++ LVLDEAD++L + F+ + ++ ++ D Q
Sbjct: 174 QKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQI 233
Query: 295 LMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLET 354
L++SAT+P VK +L +P ++ L T+ + + ++R ++
Sbjct: 234 LLFSATFPLTVKNFMEKHLREPYEI-----NLMEELTLKGVTQYYAFVQERQKVHCLNTL 288
Query: 355 ASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIM 414
S+ Q ++ IIF ++ + + + + G+ IH AQ R+ V +FR G +
Sbjct: 289 FSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNL 348
Query: 415 VATDVAARGI-----GMLLKFNF 432
V +D+ RGI +++ F+F
Sbjct: 349 VCSDLFTRGIDVQAVNVVINFDF 371
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 140 bits (353), Expect = 4e-33
Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 7/223 (3%)
Query: 194 PTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEI 253
P +E + +E KF R+ VYG QQI+ L+ G +L+ATPG L+D++E
Sbjct: 196 PQQENWLYRYEEVRKFSYQPRVHPCVVYGDADIGQQIQVLEHGCHLLVATPGGLVDLMER 255
Query: 254 GKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQ----IRPDRQTLMWSATWPKEVKQLA 309
GK L YLVLDEADRMLDMGF PQI I++Q ++ +M+SAT+P E++ LA
Sbjct: 256 GKIGLDFCKYLVLDEADRMLDMGFGPQIHLILEQDTMPLKGIHHIMMFSATFPNEIQMLA 315
Query: 310 SDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAST 369
D+L + I + +G + S S TITQ V + + +KR L L + +DS ++F T
Sbjct: 316 RDFLDEYIFLAVGRVG-STSETITQEVVWVEEPDKRSFLLDLLN--APGKDSLTLVFVET 372
Query: 370 KRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSP 412
K+ D + ++L E +P +IHGD++Q +R+ + G +P
Sbjct: 373 KKGEDSLENFLYHEVYPCTSIHGDQSQRDREGGPSSVLLGENP 415
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 140 bits (353), Expect = 4e-33
Identities = 93/311 (29%), Positives = 158/311 (49%), Gaps = 7/311 (2%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F G ++ + + G+ PT IQ + P+ L GRD++ +A TGSGKT + +P
Sbjct: 97 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 156
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ 234
+ + P G L+L+PTRELAVQ K + G +++ V GG Q +
Sbjct: 157 LQRR---EPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIH 213
Query: 235 RGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 294
++++ATPGR + + L + Y+V DEADR+ +MGF Q+ + + ++ RQT
Sbjct: 214 TCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQT 273
Query: 295 LMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLET 354
+M+SAT PK + + A L+DP+ +++ +E + ++ L L+
Sbjct: 274 VMFSATLPKLLVEFARAGLNDPVLIRL-DVESKLPDALALKFLYCRPDDRYTALVVLLKY 332
Query: 355 ASQDQDSKIIIFASTKRTCDEITSYLRTE-GWPALAIHGDKAQNERDWVLAEFRSGRSPI 413
Q S+ ++FA T+ E+ SY+ TE G +++ R A+F + + +
Sbjct: 333 VIPVQ-SQTVVFAGTQHHV-ELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSV 390
Query: 414 MVATDVAARGI 424
++ TDVAARGI
Sbjct: 391 LIVTDVAARGI 401
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 139 bits (350), Expect = 8e-33
Identities = 93/324 (28%), Positives = 161/324 (48%), Gaps = 15/324 (4%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
+F++ +L + + GF KP+ IQ + P+A++GRD++ A G+GKT ++ +P +
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233
+ +P L+ L++ PTRELA+Q + G I GG I L
Sbjct: 107 KV--KPKLNKIQA---LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 161
Query: 234 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
V IL+ TPGR++D+ +L + ++DEAD+ML F+ I +I+ + P Q
Sbjct: 162 NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 221
Query: 294 TLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLE 353
+L++SAT+P VK+ +LH P ++ L T+ I + E+R +L
Sbjct: 222 SLLFSATFPLTVKEFMVKHLHKPYEI-----NLMEELTLKGITQYYAFVEERQKLHCLNT 276
Query: 354 TASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPI 413
S+ Q ++ IIF ++ + + + G+ H Q ER+ V EFR G+
Sbjct: 277 LFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRT 336
Query: 414 MVATDVAARGI-----GMLLKFNF 432
+V +D+ RGI +++ F+F
Sbjct: 337 LVCSDLLTRGIDIQAVNVVINFDF 360
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 139 bits (350), Expect = 8e-33
Identities = 92/316 (29%), Positives = 170/316 (53%), Gaps = 15/316 (4%)
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
+++ + Q F T +Q P+ S +D+ AATGSGKTL++ +P + + P
Sbjct: 27 IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP 86
Query: 184 GDGPIV-LVLAPTRELAVQIQKECSKFGAS-SRIRNTCVYGGVPKSQQIRDLQR-GVEIL 240
++ ++++PTREL+ QI F ++ + + + + GG ++ ++ G +L
Sbjct: 87 KPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVL 146
Query: 241 IATPGRLIDMLE-IGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 299
I TPGRL D++E + + + + L+LDEADR+L+MGF+ Q+ I+ ++ R+T ++SA
Sbjct: 147 IGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSA 206
Query: 300 TWPKEVKQLASDYLHDPIQVQI-------GSLELSASHTITQIVEVLTDFEKRDRLAKHL 352
T + V++LA L +P++V++ S +L+ S T + + + E + ++ +
Sbjct: 207 TQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQLV 266
Query: 353 ETASQDQDSKIIIFASTKRTCD----EITSYLRTEGWPALAIHGDKAQNERDWVLAEFRS 408
+ ++ D K+I+F T + D ++ + + IHGD QN RD LA F
Sbjct: 267 DLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALASFTK 326
Query: 409 GRSPIMVATDVAARGI 424
S ++ TDVAARG+
Sbjct: 327 ASSGALLCTDVAARGL 342
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 137 bits (346), Expect = 2e-32
Identities = 104/304 (34%), Positives = 155/304 (50%), Gaps = 15/304 (4%)
Query: 128 VKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGP 187
+K F T IQ Q P AL GRD++G A TGSGKTL++ +P I ++ + S DG
Sbjct: 54 LKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGL 112
Query: 188 IVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRL 247
LV++PTRELA+Q + K G + GG ++ L R + IL+ TPGRL
Sbjct: 113 GALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRL 171
Query: 248 IDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVK 306
+ ++ + + L+LDEADR+LDMGF + IV + RQT+++SAT K VK
Sbjct: 172 LQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVK 231
Query: 307 QLASDYLHDPIQVQIGSLELSAS-HTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIII 365
LA L +P + + + S++ + Q + EK D L + T + K I+
Sbjct: 232 DLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLK---FKTIV 288
Query: 366 FASTKRTCDEITSYLRT-----EGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVA 420
F S +C ++ T G L +HG + Q R V A+F S R ++ TD+
Sbjct: 289 FLS---SCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIV 345
Query: 421 ARGI 424
ARG+
Sbjct: 346 ARGL 349
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 137 bits (345), Expect = 3e-32
Identities = 98/322 (30%), Positives = 164/322 (50%), Gaps = 17/322 (5%)
Query: 110 KPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCL 169
K F G +++ ++ + G T IQ + P L+G+D IG A TGSGKT ++ L
Sbjct: 4 KEANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFAL 63
Query: 170 PGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQ 229
P + ++ +P+ LVL PT ELA QI ++ G + +R V GG + +
Sbjct: 64 PILERLSEEPV-----SHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVE 118
Query: 230 IRDLQRGVEILIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI 288
+ L + I++A PGRL D L T + + YLV+DEADRML+ F+ + I +
Sbjct: 119 SQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCL 178
Query: 289 RPDRQTLMWSATWPKEVKQ-----LASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFE 343
RQ L +SAT +K+ +ASD + ++E T+ Q + D++
Sbjct: 179 PKTRQNLFFSATMKDFIKESSIFPIASDCFEWSQDSDVATVE-----TLDQRYLLCADYD 233
Query: 344 KRDRLAKHLET-ASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWV 402
+ L + L +++++ ++IF +TK+ C ++ L+ + +HG Q ER
Sbjct: 234 RDMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAA 293
Query: 403 LAEFRSGRSPIMVATDVAARGI 424
L+ F+S + ++ATDVAARG+
Sbjct: 294 LSRFKSNQIRTLIATDVAARGL 315
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 136 bits (343), Expect = 5e-32
Identities = 94/326 (28%), Positives = 170/326 (51%), Gaps = 20/326 (6%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F++ +L + + G+ KP+ IQ + P+ALSGRD++ A G+GK+ +Y +P +
Sbjct: 87 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 146
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKEC---SKFGASSRIRNTCVYGGVPKSQQIR 231
++ + D +V+ PTRELA+Q+ + C SK +++ T GG I
Sbjct: 147 LDLKK-----DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATT--GGTNLRDDIM 199
Query: 232 DLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 291
L V ++IATPGR++D+++ G + V +VLDEAD++L F + I+ + +
Sbjct: 200 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 259
Query: 292 RQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKH 351
RQ L++SAT+P V++ + +L P ++ + +E +TQ +T+ +K L
Sbjct: 260 RQILLYSATFPLSVQKFMNSHLQKPYEINL--MEELTLKGVTQYYAYVTERQKVHCLN-- 315
Query: 352 LETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRS 411
S+ Q ++ IIF ++ + + + + G+ IH Q R+ V +FR+G
Sbjct: 316 -TLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLC 374
Query: 412 PIMVATDVAARGI-----GMLLKFNF 432
+V TD+ RGI +++ F+F
Sbjct: 375 RNLVCTDLFTRGIDIQAVNVVINFDF 400
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 136 bits (343), Expect = 5e-32
Identities = 112/396 (28%), Positives = 188/396 (47%), Gaps = 67/396 (16%)
Query: 76 NFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQE-GFA 134
+ ++ +PD+ ++ V++ +E T + +F E G +++ + +
Sbjct: 203 SLFKNNPDIPELHRP-VVKQVQEKVFTSA---------AFHELGLHPHLISTINTVLKMS 252
Query: 135 KPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINA-QPLLSPGDGPIVLVLA 193
T +Q Q P+ L GRD + + TGSGKTL+YC+P + + A + + DGP LVL
Sbjct: 253 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLV 312
Query: 194 PTRELAVQ----IQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLID 249
PTRELA+Q +QK F + I + GG + + L++G+ ILI+TPGRL+D
Sbjct: 313 PTRELALQSFDTVQKLLKPF---TWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVD 369
Query: 250 MLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD---RQTLMWSATWPKEV 305
++ K + R+ +LV DEADR+LD+GFE I I++ + + RQ ++ SAT + V
Sbjct: 370 HIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGV 429
Query: 306 KQLASDYLHDPIQVQI---GSLELSASHTITQIV------EVLTDFEKRDRLAKH----- 351
+LA LHDP+ + + +L+ Q V + L F + L +H
Sbjct: 430 TRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVP 489
Query: 352 ------------LETASQDQDSKIIIFASTKRTCD-----EITSYLRTEGWPA------- 387
L+ ++D K+++F S+ + + + L + G PA
Sbjct: 490 SKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSA 549
Query: 388 ------LAIHGDKAQNERDWVLAEFRSGRSPIMVAT 417
L +HG Q ER V EF R +++ T
Sbjct: 550 SMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 136 bits (342), Expect = 7e-32
Identities = 112/329 (34%), Positives = 165/329 (50%), Gaps = 27/329 (8%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI-V 173
FD+ L ++ GF T +Q P+ L G+D++ A TG+GKT+++ LP I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 174 HINAQPLLSPGDGP--IVLVLAPTRELAVQIQKECS---KFGASSRIRNTCVYGGVPKSQ 228
I A P P IVLV+ PTRELA Q E + K+ S ++ V GG
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQ--VVIGGTKLPT 199
Query: 229 QIRDLQRG-VEILIATPGRLIDMLEIGK---TNLKRVTYLVLDEADRMLDMGFEPQIRKI 284
+ R LQ+ +IL+ATPGRL D ++ T L V LVLDEAD +LDMGF +I +I
Sbjct: 200 EQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERI 259
Query: 285 VDQIRPDRQTLMWSATWPKEVKQLASDYL---HDPIQ-VQIGSLELSASHTITQIVEVLT 340
+ + RQT ++SAT EV+Q+ L H+ + VQ G+ E +H + ++
Sbjct: 260 IAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGE---THQKVSQMYMIA 316
Query: 341 DFEKR-----DRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKA 395
++ L KH+ + + K+IIF +T + L IH K
Sbjct: 317 SLDRHFSLLYGLLKKHI---TDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKP 373
Query: 396 QNERDWVLAEFRSGRSPIMVATDVAARGI 424
Q+ R V EFR +S I+V +DV+ARG+
Sbjct: 374 QSYRTRVSDEFRKSKSIILVTSDVSARGV 402
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 135 bits (340), Expect = 1e-31
Identities = 99/332 (29%), Positives = 169/332 (50%), Gaps = 20/332 (6%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
+ S+ +G +L+ +K+ + IQ P L G D++G A T +GKT ++ LP
Sbjct: 380 LTSWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPI 439
Query: 172 IVHI-----NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPK 226
I I + DGP+ L+LAPTRELA QI + + ++ I YG +
Sbjct: 440 IDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQSDR 499
Query: 227 SQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEP--QIRK 283
++ + +++ G +ILI T GR++D +L + +LV DEADR+L DM +P +
Sbjct: 500 ARSLNEIRNGCDILIGTCGRIMDFTVKSHISLLHLRFLVFDEADRLLQDMKKDPLGHLGA 559
Query: 284 IVD-----QIRPDRQTLMWSATWPKEVKQLASDYL------HDPIQVQIGSLELSASHTI 332
I+ + RQT+M SAT+ V +A++ + + I++ + + LS +
Sbjct: 560 IIKDAGFMESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANGRLSKRVNL 619
Query: 333 TQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHG 392
+ E EK +L + L+ + K IIF K CD + L + G A +HG
Sbjct: 620 -EFFECKGLAEKNAKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHG 678
Query: 393 DKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
D++Q+ R+ ++ +F+S R ++V TD+ +RGI
Sbjct: 679 DRSQDMREKLINDFKSNRVNLLVTTDLLSRGI 710
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 135 bits (339), Expect = 2e-31
Identities = 97/351 (27%), Positives = 166/351 (46%), Gaps = 24/351 (6%)
Query: 89 ESEVIEFRKENEMT------ISGHDVPKPIRSFDEAGFPSYVLDE-----VKQEGFAKPT 137
E E++++ +E+E ++G V K +GF ++L + GF P+
Sbjct: 11 EEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPS 70
Query: 138 GIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI-VLVLAPTR 196
+Q + P A+ G D+I A +G GKT + L + I P G + LVL TR
Sbjct: 71 EVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTR 124
Query: 197 ELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGV--EILIATPGRLIDMLEIG 254
ELA QI E +F V+ G + +DL + I++ TPGR++ +
Sbjct: 125 ELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREK 184
Query: 255 KTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYL 313
+LK V + +LDE D+ML+ + +++I D+Q +M+SAT KE++ + ++
Sbjct: 185 DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244
Query: 314 HDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTC 373
DP+++ + H + Q L++ EK +L L+ +Q ++IF +
Sbjct: 245 QDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQ---VVIFVKSVSRA 301
Query: 374 DEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
E+ L +P++ IH +Q ER F+ G I+VATD+ RGI
Sbjct: 302 AELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGI 352
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 135 bits (339), Expect = 2e-31
Identities = 90/323 (27%), Positives = 161/323 (48%), Gaps = 21/323 (6%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F++ +L + ++GF +P+ IQ + P+AL+GRD++ A G+GKT ++C+P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ 234
I+ + G+ VL T ++ C + G +I+ GG I L
Sbjct: 193 IDQDNNVIQGN----CVLDHTSQV-------CKELGKHLKIQVMVTTGGTSLKDDIMRLY 241
Query: 235 RGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 294
+ V +L+ TPGR++D+ + G LK + LV+DEAD++L F+P + ++ + RQ
Sbjct: 242 QPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQI 301
Query: 295 LMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLET 354
LM+SAT+P VK +L +P + L T+ I + E+R ++
Sbjct: 302 LMFSATFPVTVKDFKDRFLTNPYVI-----NLMDELTLKGITQFYAFVEERQKIHCLNTL 356
Query: 355 ASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIM 414
S+ Q ++ IIF ++ + + + G+ IH Q+ R+ V +FR+G +
Sbjct: 357 FSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL 416
Query: 415 VATDVAARGI-----GMLLKFNF 432
V TD+ RGI +++ F+F
Sbjct: 417 VCTDLFTRGIDIQAVNVVINFDF 439
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 134 bits (338), Expect = 2e-31
Identities = 97/351 (27%), Positives = 166/351 (46%), Gaps = 24/351 (6%)
Query: 89 ESEVIEFRKENEMT------ISGHDVPKPIRSFDEAGFPSYVLDE-----VKQEGFAKPT 137
E E++++ +E+E ++G V K +GF ++L + GF P+
Sbjct: 11 EEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPS 70
Query: 138 GIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI-VLVLAPTR 196
+Q + P A+ G D+I A +G GKT + L + I P G + LVL TR
Sbjct: 71 EVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTR 124
Query: 197 ELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGV--EILIATPGRLIDMLEIG 254
ELA QI E +F V+ G + +DL + I++ TPGR++ +
Sbjct: 125 ELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREK 184
Query: 255 KTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYL 313
+LK V + +LDE D+ML+ + +++I D+Q +M+SAT KE++ + ++
Sbjct: 185 DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244
Query: 314 HDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTC 373
DP+++ + H + Q L++ EK +L L+ +Q ++IF +
Sbjct: 245 QDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQ---VVIFVKSVSRA 301
Query: 374 DEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
E+ L +P++ IH +Q ER F+ G I+VATD+ RGI
Sbjct: 302 AELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGI 352
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 134 bits (337), Expect = 3e-31
Identities = 92/315 (29%), Positives = 163/315 (51%), Gaps = 15/315 (4%)
Query: 113 RSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG--RDMIGVAATGSGKTLSYCLP 170
+SFDE G +L + F KP+ IQ + P+ L R+MI + +G+GKT ++ L
Sbjct: 92 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 151
Query: 171 GIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQI 230
+ +N + P + LAP+RELA Q + + G ++I + + VP S +
Sbjct: 152 MLTRVNPEDA-----SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLI---VPDSFE- 202
Query: 231 RDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDM-GFEPQIRKIVDQIR 289
++ Q ++++ TPG ++D++ L+++ VLDEAD MLD G Q ++ +
Sbjct: 203 KNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP 262
Query: 290 PDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLA 349
D Q +++SAT+ V+Q A + + +++ + E++ ++ + +K D L
Sbjct: 263 KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLT 322
Query: 350 KHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSG 409
E IIF +TK+T + + L++EG +HGD ERD ++ +FR G
Sbjct: 323 ---ELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG 379
Query: 410 RSPIMVATDVAARGI 424
RS +++ T+V ARGI
Sbjct: 380 RSKVLITTNVLARGI 394
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 134 bits (337), Expect = 3e-31
Identities = 108/331 (32%), Positives = 155/331 (46%), Gaps = 21/331 (6%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
I+ F + + + F PT +Q AL G+D++G A TGSGKTL++ +P
Sbjct: 71 IKKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPV 130
Query: 172 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIR 231
+ H+ S DG ++++PTRELA QI + K G + GG + R
Sbjct: 131 LEHLFMNKW-SRTDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFE-R 188
Query: 232 DLQRGVEILIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
ILI TPGRL+ ++ N + LVLDEADR LDMGF+ + I++ P
Sbjct: 189 TRMDQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPP 248
Query: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSL----ELSASHTITQIVEVLTDFE--- 343
RQTL++SAT V+ LA L DP+ V G E SAS T VL E
Sbjct: 249 VRQTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQ 308
Query: 344 -------KRDRLAKHLETASQDQDSKIIIFASTKRTCD---EITSYLRTEGWPALAIHGD 393
D++ KII+F ++ + EI LR G P LA++G
Sbjct: 309 QSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLR-PGSPLLALYGT 367
Query: 394 KAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
Q+ R + +F +M +TDVA+RG+
Sbjct: 368 LHQDRRIAIYEDFLRKSHVVMFSTDVASRGL 398
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 134 bits (337), Expect = 3e-31
Identities = 99/362 (27%), Positives = 170/362 (46%), Gaps = 50/362 (13%)
Query: 113 RSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 172
+SF+E G P +LD +++EGF+ PT +Q P + G D + + TGSGKTL+Y LP +
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 173 VHI-----NAQPLLSPGDGPI---VLVLAPTRELAVQIQKECSK-FGASSRIRNTCVYGG 223
I ++ S D +++AP+REL +QI +E K G R + GG
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGG 229
Query: 224 VPKSQQIRDLQRG-VEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIR 282
+ +Q L++ I++ TPGR+ ++ + GK + +LVLDE D +L F I
Sbjct: 230 ANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIH 289
Query: 283 KIVDQI--------------RPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLE--- 325
+I++ + R +RQT++ SAT P V + A + H+P+ VQ +
Sbjct: 290 RILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLD 349
Query: 326 --------LSASHTITQI-VEVLTDFEKRDRLAKHLETASQDQD--------------SK 362
+S + T ++ ++ T + KH S+ Q
Sbjct: 350 TVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQS 409
Query: 363 IIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAAR 422
+I F + R ++ L G + +HGD + R VL +F++G ++V +++AR
Sbjct: 410 VIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSAR 469
Query: 423 GI 424
G+
Sbjct: 470 GL 471
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 134 bits (336), Expect = 4e-31
Identities = 93/309 (30%), Positives = 163/309 (52%), Gaps = 10/309 (3%)
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
+++ + + GF T +Q + P S +D++ AATGSGKTL++ LP I I P
Sbjct: 27 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
Query: 184 GDGPIV-LVLAPTRELAVQIQKECSKFGAS-SRIRNTCVYGGVPKSQQIRDLQR-GVEIL 240
++ ++++PTREL+ QI K F ++ + + + GG + L+ G +L
Sbjct: 87 KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLL 146
Query: 241 IATPGRLIDMLE-IGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 299
I TPGRL DM++ + + + + L+LDEADR+LDMGF+ Q+ I+ ++ R+T ++SA
Sbjct: 147 IGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSA 206
Query: 300 TWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQ 359
T + V LA L + ++V G+ S + + + + +++ HL +++
Sbjct: 207 TQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHL--LIENK 264
Query: 360 DSKIIIFASTKRTCDE---ITSYLRT-EGWPALAIHGDKAQNERDWVLAEFRSGRSPIMV 415
+ K+++F T D + S + T + + HG Q RD LA F S +++
Sbjct: 265 NKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLL 324
Query: 416 ATDVAARGI 424
TDVAARG+
Sbjct: 325 CTDVAARGL 333
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 133 bits (334), Expect = 6e-31
Identities = 107/384 (27%), Positives = 175/384 (44%), Gaps = 73/384 (19%)
Query: 114 SFDEAGFPSYVLDEVKQE-GFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 172
SF G + + D++K+ GF PT +Q Q P+ LSGRD++ A TG+GKT++Y P I
Sbjct: 30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89
Query: 173 VHINA-QPLLSPGDGPIVLVLAPTRELAVQIQKECSK-FGASSRIRNTCVYGGVPKSQQI 230
H+ P + G LV+ PTREL +Q+ + K I V GG K+++
Sbjct: 90 HHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEK 149
Query: 231 RDLQRGVEILIATPGRLIDMLEIGKTNL-KRVTYLVLDEADRMLDMGFEPQIRKIV---- 285
L++G+ ILIATPGRL+D L+ + + K + +++ DEAD +L++G+ +I +I+
Sbjct: 150 ARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLG 209
Query: 286 ---------DQIRP---DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTI- 332
D I P +Q L+ SAT +V LA L DP+ + + + +L + +I
Sbjct: 210 SGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIE 269
Query: 333 ------------------------------TQIVEVLTDFEKRDRLAKHLETA----SQD 358
+Q+V+ RL L ++
Sbjct: 270 SPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFERE 329
Query: 359 QDSKIIIFASTKRTCDEITSYLRTEGWP------------------ALAIHGDKAQNERD 400
K+++F ST+ D S L WP +HG Q +R
Sbjct: 330 ASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRR 389
Query: 401 WVLAEFRSGRSPIMVATDVAARGI 424
F++ + ++++TDVAARG+
Sbjct: 390 SAFGTFKTEKQAVLLSTDVAARGL 413
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 132 bits (333), Expect = 8e-31
Identities = 107/357 (29%), Positives = 180/357 (49%), Gaps = 22/357 (6%)
Query: 91 EVIEF-RKENEMTISGHDVPKPIRSFD----EAGFPSYVLDEVKQEGFAKPTGIQCQGWP 145
E I F R ++++ + G D+P PI +F E S +L + GF PT IQ Q P
Sbjct: 30 EKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIP 89
Query: 146 MALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKE 205
+ L GR+++ A TGSGKTL++ +P ++ + QP G L+++PTRELA QI +E
Sbjct: 90 VMLHGRELLASAPTGSGKTLAFSIPILMQLK-QP---ANKGFRALIISPTRELASQIHRE 145
Query: 206 CSKFGASSRIRNTCVYGGVPKSQQI-RDLQRGVEILIATPGRLIDMLEIGK--TNLKRVT 262
K + R ++ +++ + +IL+ TP RLI +L+ +L V
Sbjct: 146 LIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVE 205
Query: 263 YLVLDEADRMLD---MGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVKQLASDYLHDPIQ 318
+LV+DE+D++ + GF Q+ I + + M+SAT+ +V+Q L + I
Sbjct: 206 WLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 265
Query: 319 VQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITS 378
V IG+ SA T+ Q E+L + +L E + + +++F + E+
Sbjct: 266 VSIGARN-SAVETVEQ--ELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKELFH 322
Query: 379 YLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI---GMLLKFNF 432
L EG IH ++ Q +RD + FR+G+ +++ T + ARGI G+ L N+
Sbjct: 323 ELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINY 379
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 132 bits (333), Expect = 8e-31
Identities = 108/400 (27%), Positives = 200/400 (50%), Gaps = 41/400 (10%)
Query: 62 NWDEELPNLPV-FEKNFYQEH-----PDVAQMSES----EVIEFRKENEMTISGHDVPKP 111
+W E P P + NF + + PD ++ + I+F ++ + ++P
Sbjct: 675 HWGYECPTRPKDLQGNFLESYDFVFTPDDKMFEDAVNNDDKIDFDQKVVASTGKVEIPD- 733
Query: 112 IRSFDEAGF---PSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYC 168
+ SFD GF P + D +K+ +PT IQ + + G D++ A TGSGKTL++
Sbjct: 734 MASFD--GFKILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFL 791
Query: 169 LPGIVHINAQ-----PLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGG 223
+P ++ + + + P +L++APTREL Q + + ++ +GG
Sbjct: 792 IPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAFGG 851
Query: 224 VPKSQQIRDLQR--GVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMG-FEPQ 280
++ ++ L+ + IL+AT GRL D + G+ +L ++ Y+VLDEADRM+D F +
Sbjct: 852 YSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSNDFGEE 911
Query: 281 IRKIVDQI-RPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLEL----SASHTITQI 335
+ KI+ +QT+++SA++ ++ L SD L ++ L++ +A+ I Q
Sbjct: 912 VSKIIGSPGERTQQTVLFSASFSED---LQSDDLPKFVKEGYTMLQVDKFGTANEKIDQK 968
Query: 336 VEVLTDFEKRDRLAKHLETASQD---------QDSKIIIFASTKRTCDEITSYLRTEGWP 386
+ + EKRD + K L + K +IF ++ + CD + + + + G
Sbjct: 969 ILPVPRTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVS 1028
Query: 387 ALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGM 426
+++H + Q +RD L +FR G+ MVA++V ARG+ +
Sbjct: 1029 TISMHSYQNQEQRDRTLDDFRRGKYQCMVASNVCARGLNI 1068
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 132 bits (333), Expect = 8e-31
Identities = 122/380 (32%), Positives = 181/380 (47%), Gaps = 35/380 (9%)
Query: 64 DEELPNLPVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSY 123
DEEL P + N +E Q S V+E ++E HD + FDE+
Sbjct: 335 DEEL--YPPLDINRVREDLSKKQ-SVDNVMEEKQEP------HDSIYSAKRFDESCISPL 385
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
L + G K T +Q L G+D + A TG+GK++++ LP I + ++
Sbjct: 386 TLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETV--LKAMNS 443
Query: 184 GDG-----PI-VLVLAPTRELAVQIQKECSKFGASSRIRN-------TCVYGGVPKSQQI 230
G G PI VL+L PTRELA QI E + ++N T + G + Q
Sbjct: 444 GKGVHKVAPIFVLILCPTRELASQIAAE-----GKALLKNHDGIGVQTLIGGTRFRLDQQ 498
Query: 231 RDLQRGVEILIATPGRLIDMLE--IGKTN-LKRVTYLVLDEADRMLDMGFEPQIRKIVDQ 287
R +ILIATPGRL+D +E G T+ L + ++DEAD +LD+GF+ + KI+D
Sbjct: 499 RLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDC 558
Query: 288 IRPDRQTLMWSATWPKEVKQLASDYL-HDPIQVQIGSLELSASHTITQIVEVLTDFEKRD 346
+ RQ+L++SAT PKEV++++ L D + L +H + ++ E
Sbjct: 559 LPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHF 618
Query: 347 RLAKHL--ETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLA 404
L HL E + D KII+F ST + + LR IH K Q R V
Sbjct: 619 HLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSD 678
Query: 405 EFRSGRSPIMVATDVAARGI 424
EF+ I+V +DV+ARG+
Sbjct: 679 EFKESNRLILVTSDVSARGM 698
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 132 bits (332), Expect = 1e-30
Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 26/353 (7%)
Query: 89 ESEVIEFRKENEMTISGHDVPKPIR--------SFDEAGFPSYVLDE-----VKQEGFAK 135
E++++++ +E E P P + S +GF ++L + GF
Sbjct: 7 ENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEH 66
Query: 136 PTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI-VLVLAP 194
P+ +Q + P A+ G D++ A +G GKT + L + I P +G + VLV+
Sbjct: 67 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE------PVNGQVTVLVMCH 120
Query: 195 TRELAVQIQKECSKFGA-SSRIRNTCVYGGVPKSQQIRDLQRGV-EILIATPGRLIDMLE 252
TRELA QI KE +F ++ + +GG+ + L++ +++ TPGR++ ++
Sbjct: 121 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 180
Query: 253 IGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASD 311
+LK V + VLDE D+ML+ + +++I ++Q +M+SAT K+++ +
Sbjct: 181 NRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRK 240
Query: 312 YLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKR 371
++ DP++V + H + Q L D EK +L L+ +Q +IIF + +
Sbjct: 241 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQ---VIIFVKSVQ 297
Query: 372 TCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
C + L + +PA+AIH AQ ER +F+ + I+VAT++ RG+
Sbjct: 298 RCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 132 bits (332), Expect = 1e-30
Identities = 111/334 (33%), Positives = 162/334 (48%), Gaps = 18/334 (5%)
Query: 106 HDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTL 165
HD + FDE+ L + G K T +Q L G+D + A TG+GK++
Sbjct: 321 HDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSM 380
Query: 166 SYCLPGIVHINAQPLLSPGDG-----PI-VLVLAPTRELAVQIQKECS---KFGASSRIR 216
++ LP I + ++ G G PI L+L PTRELA QI E KF ++
Sbjct: 381 AFLLPAIETV--LKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ 438
Query: 217 NTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLE--IGKTN-LKRVTYLVLDEADRML 273
T + G K Q R +ILIATPGRL+D +E G T+ L + ++DEAD +L
Sbjct: 439 -TLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLL 497
Query: 274 DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYL-HDPIQVQIGSLELSASHTI 332
D+GF + KI+D + RQ+L++SAT PKEV++++ L D + L +H
Sbjct: 498 DLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDK 557
Query: 333 TQIVEVLTDFEKRDRLAKHL--ETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAI 390
+ ++ E L HL E + D KII+F ST + + LR I
Sbjct: 558 VRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREI 617
Query: 391 HGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
H K Q R V EF+ I+V +DV+ARG+
Sbjct: 618 HARKPQLHRTRVSDEFKESNRLILVTSDVSARGM 651
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 132 bits (332), Expect = 1e-30
Identities = 108/377 (28%), Positives = 188/377 (49%), Gaps = 24/377 (6%)
Query: 71 PVFEKNFYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQ 130
P EK + ++ + +E E E RK+ + + G +VP P+ SF +L ++Q
Sbjct: 74 PKKEKTLSPKELEIQKAAE-EANETRKQYGIRVLGKNVPPPVDSFGTLTRDFKMLPRLQQ 132
Query: 131 E----GFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDG 186
F PT IQ Q P+ L R ++ A TGSGKTL++ P I + A G
Sbjct: 133 NLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTT----G 188
Query: 187 PIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYG-GVPKSQQIRDLQRGVEILIATPG 245
LVLAPTRELA QI +EC++ + +R + K + + ++ +IL++TP
Sbjct: 189 LRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPN 248
Query: 246 RLIDML--EIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI-----RPDRQTLMWS 298
R+ +L E +L V + VLDEADR+++ G + ++ +D I P + +S
Sbjct: 249 RVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEG-QNNFKEQLDDIYAACSNPTKCVAFFS 307
Query: 299 ATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQD 358
AT+ V + A +L + +++ IG ++ SA+ T+ Q E+L + +L + Q
Sbjct: 308 ATYTVPVAKWALRHLKNLVRITIG-VQNSATETVQQ--ELLFVGSEGGKLVAIRDLVRQG 364
Query: 359 QDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATD 418
+++F +K ++ L +G IH +++Q++RD + FR G +++ T+
Sbjct: 365 LQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTE 424
Query: 419 VAARGI---GMLLKFNF 432
+ RGI G+ L N+
Sbjct: 425 LMGRGIDFKGVNLVINY 441
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 132 bits (331), Expect = 1e-30
Identities = 105/316 (33%), Positives = 156/316 (49%), Gaps = 7/316 (2%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
I F + L +++ + T IQ Q +AL G+D++G A TGSGKTL++ +P
Sbjct: 68 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127
Query: 172 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIR 231
+ + S DG VL+++PTRELA Q + K G + + GG +
Sbjct: 128 LEALYRLQWTST-DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 186
Query: 232 DLQRGVEILIATPGRLID-MLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290
+ + IL+ TPGRL+ M E + + LVLDEADR+LDMGF + +++ +
Sbjct: 187 RINN-INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 245
Query: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQI-GSLELSASHTITQIVEVLTDFEKRDRLA 349
RQTL++SAT K VK LA L +P V + + S T+ Q V +K L
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305
Query: 350 KHLETASQDQDSKIIIFASTKRTCDEITSYLRTE-GWPALAIHGDKAQNERDWVLAEFRS 408
L S + I+ F+S K + R G LA+HG + Q R V EF
Sbjct: 306 SFLR--SHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVR 363
Query: 409 GRSPIMVATDVAARGI 424
R+ ++ ATD+AARG+
Sbjct: 364 KRAAVLFATDIAARGL 379
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 131 bits (329), Expect = 2e-30
Identities = 87/323 (26%), Positives = 157/323 (47%), Gaps = 15/323 (4%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F++ +L + + GF +P+ IQ + P+ALSGRD++ A G+GKT ++ +P +
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ 234
++ + L+L PTRELA+Q + C G ++ GG I L
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLN 160
Query: 235 RGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 294
V I++ TPGR++D+ G + T V+DEAD++L F P I +++ +RQ
Sbjct: 161 DTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQI 220
Query: 295 LMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLET 354
++SAT+P VK +L+ P ++ + ++ +TQ + + +K L
Sbjct: 221 SLYSATFPLIVKNFMDKHLNKPYEINL--MDELTLRGVTQYYAFVDESQKVHCLN---TL 275
Query: 355 ASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIM 414
S+ Q ++ IIF ++ + + + G+ H Q+ R+ V FR+G +
Sbjct: 276 FSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNL 335
Query: 415 VATDVAARGI-----GMLLKFNF 432
V +D+ RGI +++ F+F
Sbjct: 336 VCSDLLTRGIDIQAVNVVINFDF 358
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 130 bits (328), Expect = 3e-30
Identities = 95/355 (26%), Positives = 168/355 (46%), Gaps = 19/355 (5%)
Query: 80 EHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSY-----VLDEVKQEGFA 134
++ D+ + E E DV S +GF + +L + GF
Sbjct: 3 DNDDLLDYEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFE 62
Query: 135 KPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI--VLVL 192
P+ +Q + P A+ G D++ A +G GKT + L + L P D VLV+
Sbjct: 63 HPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ------LEPSDNNTCHVLVM 116
Query: 193 APTRELAVQIQKECSKFGA-SSRIRNTCVYGGVPKSQQIRDLQRGV-EILIATPGRLIDM 250
TRELA QI KE +F ++ +GG+ + L+ G I++ TPGR++ +
Sbjct: 117 CHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILAL 176
Query: 251 LEIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLA 309
+ K NLK + + VLDE D+ML+ + +++I +Q +M+SAT K+++ +
Sbjct: 177 IRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVC 236
Query: 310 SDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAST 369
++ DP++V + H + Q L + EK +L + L+ +Q ++IF +
Sbjct: 237 KKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQ---VVIFVKS 293
Query: 370 KRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ C ++ L + +PA+ IH Q ER +F+ + I+VAT++ RG+
Sbjct: 294 VQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGM 348
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 129 bits (325), Expect = 7e-30
Identities = 94/354 (26%), Positives = 173/354 (48%), Gaps = 27/354 (7%)
Query: 89 ESEVIEFRKENEMTISGHD-----VPKPIR----SFDEAGFPSYVLDE-----VKQEGFA 134
++E++++ + T +G D K ++ S +GF ++L + GF
Sbjct: 7 DNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFE 66
Query: 135 KPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI-VLVLA 193
P+ +Q + P A+ G D++ A +G GKT + L + L P G + VLV+
Sbjct: 67 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ------LEPVTGQVSVLVMC 120
Query: 194 PTRELAVQIQKECSKFGA-SSRIRNTCVYGGVPKSQQIRDLQRGV-EILIATPGRLIDML 251
TRELA QI KE +F ++ +GG+ + L++ I++ TPGR++ +
Sbjct: 121 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA 180
Query: 252 EIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAS 310
NLK + + +LDE D+ML+ + +++I ++Q +M+SAT KE++ +
Sbjct: 181 RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR 240
Query: 311 DYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTK 370
++ DP+++ + H + Q L D EK +L L+ +Q ++IF +
Sbjct: 241 KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQ---VVIFVKSV 297
Query: 371 RTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+ C + L + +PA+AIH Q ER +F+ + I+VAT++ RG+
Sbjct: 298 QRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 351
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 129 bits (323), Expect = 1e-29
Identities = 89/263 (33%), Positives = 138/263 (51%), Gaps = 17/263 (6%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F E G S+++++ +Q G KPT +Q P L GRD +G A TGSGKT ++ LP +
Sbjct: 4 FAELGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQ 234
++ P G LVL PTRELA QI + G +++ + GG+ Q +L
Sbjct: 64 LSEDPY-----GIFCLVLTPTRELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELS 118
Query: 235 RGVEILIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMG---FEPQIRKIVDQIRP 290
R ++IATPGRL D L T ++K++ +LV+DEADR+L+ G F + I+ +
Sbjct: 119 RKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPA 178
Query: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVE--VLTDFEKRDRL 348
RQTL++SAT +++L + P + + T+ Q+ + +L + +D
Sbjct: 179 RRQTLLFSATLTDTLRELQGLATNQPFFWE----AQAPVSTVEQLDQRYLLVPEKVKDAY 234
Query: 349 AKHLETASQD--QDSKIIIFAST 369
HL QD +D IIIF +T
Sbjct: 235 LVHLIQRFQDEHEDWSIIIFTNT 257
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 127 bits (318), Expect = 4e-29
Identities = 95/341 (27%), Positives = 151/341 (43%), Gaps = 70/341 (20%)
Query: 86 QMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWP 145
+M++ + FR+ +T G +P PIRS+ E+ ++L+ + + G+ + T IQ Q P
Sbjct: 281 EMTDRDWWLFREGYSITTKGGKIPNPIRSWKESSLLPHILEVIDKCGYKESTPIQRQAIP 340
Query: 146 MALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKE 205
L RD ++ R++
Sbjct: 341 FGLQNRD--------------------------------------IIGRDRQV------- 355
Query: 206 CSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLV 265
++R V GG+ + L G EI+IATPG LID+LE L TY+V
Sbjct: 356 ----WEAARYPTVAVIGGISREDWGFRLLMGCEIVIATPGHLIDVLENRYLVLSCCTYVV 411
Query: 266 LDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLE 325
LDEADRM+D+GFEP ++KI++ + + D DP + + + E
Sbjct: 412 LDEADRMIDVGFEPDVQKILEHM---------------PQSEARHDESEDP-EKMLANFE 455
Query: 326 LS--ASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTE 383
H + V ++++ EKR +L LE Q D I IF + K+ CD + L
Sbjct: 456 SGKRKPHERVEQVFLMSESEKRKKL---LEILKQGFDPAITIFVNQKKGCDVLAKSLEKM 512
Query: 384 GWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
G+ A +HG K Q +R++ L+ + G ++V TDVA GI
Sbjct: 513 GYNACTLHGGKGQEQREFALSNLKPGAKDVLVTTDVAGHGI 553
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 125 bits (313), Expect = 2e-28
Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 15/307 (4%)
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
+L + GF P+ +Q P ++ G D++ A +G GKT + L + I P
Sbjct: 62 LLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE------P 115
Query: 184 GDGPI-VLVLAPTRELAVQIQKECSKFGAS-SRIRNTCVYGGVPKSQQI---RDLQRGVE 238
DG + VLVL TRELA QI+ E ++F +R YGG+ Q + +D +
Sbjct: 116 VDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPH 175
Query: 239 ILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMW 297
I++ATPGRL ++ + V + VLDE D++L+ + I+++ P +Q +M+
Sbjct: 176 IVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMF 235
Query: 298 SATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQ 357
SAT E++ + ++ +P+++ + H + Q L + K ++ L++
Sbjct: 236 SATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEF 295
Query: 358 DQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVAT 417
+Q ++IF + +E+ LR +P++ IHG Q ER F+ I VAT
Sbjct: 296 NQ---VVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVAT 352
Query: 418 DVAARGI 424
DV RGI
Sbjct: 353 DVFGRGI 359
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 125 bits (313), Expect = 2e-28
Identities = 86/304 (28%), Positives = 157/304 (51%), Gaps = 27/304 (8%)
Query: 127 EVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHI-----NAQPLL 181
E+++ GF K T +Q + P L G+D++ + TG+GKT+++ P + I +P
Sbjct: 18 EIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRP-- 75
Query: 182 SPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILI 241
G +V+ PTRELA+QI++ F ++ C GG+ + + ++ I +
Sbjct: 76 ----GVTAVVITPTRELALQIREVAGLFD----VKCECFIGGMSIEEDYKRMKEEFSIAV 127
Query: 242 ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 301
TPGRL++++ +++LVLDEAD++L GFE ++ +++ ++ +R T ++SAT
Sbjct: 128 GTPGRLLEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLPRNRVTGLFSATR 187
Query: 302 PKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDS 361
V +L+ +L +P+ + +G+ E+ V ++ + K L
Sbjct: 188 NDSVDKLSRVFLRNPVSINVGNNEM----------PVALEYIVVSPMEKLLVLMDIVTGR 237
Query: 362 KIIIFASTKRTCDEITSYLRTEGWPALA-IHGDKAQNERDWVLAEFRSGRSPIMVATDVA 420
+ I+F +T D + + G+ + IHG +Q+ER+ V EF R ++ TDVA
Sbjct: 238 RCIVFFATCSEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEFFQ-RDGLLFCTDVA 296
Query: 421 ARGI 424
ARGI
Sbjct: 297 ARGI 300
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 124 bits (311), Expect = 3e-28
Identities = 85/299 (28%), Positives = 148/299 (49%), Gaps = 15/299 (5%)
Query: 132 GFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI-VL 190
GF P+ +Q P ++ G D++ A +G GKT + L + ++ P G + V+
Sbjct: 81 GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP------GEVAVV 134
Query: 191 VLAPTRELAVQIQKECSKFGA-SSRIRNTCVYGGVPKSQQ---IRDLQRGVEILIATPGR 246
V+ RELA QI+ E +F ++ YGG P S+ +++ I++ATPGR
Sbjct: 135 VICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGR 194
Query: 247 LIDMLEIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 305
L ++ +L V V+DE D++L+ + +++I D+Q +M+SAT +E+
Sbjct: 195 LKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEI 254
Query: 306 KQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIII 365
+ + +L +P+++ + H + Q L + EK +LA+ L+ +Q +II
Sbjct: 255 RPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQ---VII 311
Query: 366 FASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
F + +E+T L +PA+ +HG Q ER F+ I V+TDV RGI
Sbjct: 312 FVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGI 370
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 124 bits (311), Expect = 3e-28
Identities = 86/308 (27%), Positives = 160/308 (51%), Gaps = 14/308 (4%)
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
VL+ ++ GF +P+ +Q + P+ G D+I A +G+GKT + + + + L +
Sbjct: 73 VLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ 132
Query: 184 GDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVY-GGVPKSQQIRDLQRGVEILIA 242
+L+LAPTRE+AVQI + G V+ GG P SQ L++ I +
Sbjct: 133 -----ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAVG 186
Query: 243 TPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMG-FEPQIRKIVDQIRPDRQTLMWSATW 301
+PGR+ ++E+ N + +LDEAD++L+ G F+ QI I + +Q L SAT+
Sbjct: 187 SPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 246
Query: 302 PKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRL----AKHL-ETAS 356
P+ + + Y+ DP V++ S + S + Q +V+ + ++ +HL E S
Sbjct: 247 PEFLANALTKYMRDPTFVRLNSSDPSLI-GLKQYYKVVNSYPLAHKVFEEKTQHLQELFS 305
Query: 357 QDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVA 416
+ ++ ++F++ + L ++G+PA I G+ QN+R +A+ + ++++
Sbjct: 306 RIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLIS 365
Query: 417 TDVAARGI 424
TD+ +RGI
Sbjct: 366 TDLTSRGI 373
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 122 bits (307), Expect = 8e-28
Identities = 91/303 (30%), Positives = 150/303 (49%), Gaps = 26/303 (8%)
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
+++ + + GF T +Q + P S +D++ AATGSGKTL++ LP I I P
Sbjct: 28 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
Query: 184 GDGPIV-LVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIA 242
++ ++++PTREL+ QI K + +R ++ + G +LI
Sbjct: 88 KPHQVMGVIISPTRELSAQIHK------VARAVRLDFAKCREVEADMNTLEEEGANLLIG 141
Query: 243 TPGRLIDMLE-IGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 301
TPGRL DM++ + + + + L+LDEADR+LDMGF+ Q+ I+ ++ R+T ++SAT
Sbjct: 142 TPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQ 201
Query: 302 PKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDS 361
+ V LA L +P L+ A +Q+V +L + + + + + A D
Sbjct: 202 TQAVADLAKAGLRNPY------LKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWG 255
Query: 362 KIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAA 421
+I +I S +P HG Q RD LA F S +++ TDVAA
Sbjct: 256 LVI---------SKIPSLKSISFFPT---HGKMDQKGRDTALASFTEASSGVLLCTDVAA 303
Query: 422 RGI 424
RG+
Sbjct: 304 RGL 306
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 122 bits (306), Expect = 1e-27
Identities = 91/328 (27%), Positives = 158/328 (47%), Gaps = 16/328 (4%)
Query: 110 KPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCL 169
K + +F E G V+ +++ PT IQC G P + + ++ + TGSGKTL+Y L
Sbjct: 109 KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLL 168
Query: 170 PGIVHINAQPLLSPGDG---------PIVLVLAPTRELAVQIQKECSKFGASSRIRNTCV 220
P IV + ++ + P +VL PTREL+ Q+ A R R+ V
Sbjct: 169 P-IVQVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQVCLHQDYHHA--RFRSILV 225
Query: 221 YGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQ 280
GG Q L +++++ TPGR++ +E G + YLVLDEAD M D GF P+
Sbjct: 226 SGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPE 285
Query: 281 IRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLT 340
IRK + + + + ++ + V++L + ++ +L ++ +++
Sbjct: 286 IRKFLAPLNQHIKVVNEIVSF-QAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSG 344
Query: 341 DFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERD 400
+K + L + LE S + SK+++F +T + + YL + HG+ +R
Sbjct: 345 GEDKLEALLQVLE-PSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRV 403
Query: 401 WVLAEFR--SGRSPIMVATDVAARGIGM 426
L +F+ G P +V TD+AARG+ +
Sbjct: 404 ENLKKFKDEEGDCPTLVCTDLAARGLDL 431
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 122 bits (305), Expect = 1e-27
Identities = 84/274 (30%), Positives = 136/274 (48%), Gaps = 11/274 (4%)
Query: 157 AATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIR 216
A TG+GKTL++ +P + ++ P G L+L PTRELA QI ++ + G ++
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDPY-----GIYALILTPTRELAFQIAEQFTALGKPITLK 244
Query: 217 NTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNL----KRVTYLVLDEADRM 272
+ + GG Q R+L +++ATPGRL D++E + K++ + VLDEADRM
Sbjct: 245 CSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRM 304
Query: 273 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQ-IGSLELSASHT 331
L+ + Q++ I + I RQTL+ SAT + L P + G + S
Sbjct: 305 LEGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDR 364
Query: 332 ITQIVEVLTDFEKRDRLAKHLETASQ-DQDSKIIIFASTKRTCDEITSYLRTEGWPALAI 390
+ Q V K L ++ S+ + S ++IFA T R C + G+ ++
Sbjct: 365 LEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSL 424
Query: 391 HGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
H Q +R L+ FRS +++ TDVA+RG+
Sbjct: 425 HSQIPQKQRLAALSAFRSKTLQVIICTDVASRGL 458
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 121 bits (304), Expect = 2e-27
Identities = 89/317 (28%), Positives = 161/317 (50%), Gaps = 17/317 (5%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG--RDMIGVAATGSGKTLSYCL 169
++SF+E +L + F KP+ IQ + P+ LS R+MIG + +G+GKT ++ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 170 PGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTC-VYGGVPKSQ 228
+ ++A P + LAP+RELA QI ++ G + ++ + VPK
Sbjct: 173 TMLSRVDASV-----PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA 227
Query: 229 QIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDM-GFEPQIRKIVDQ 287
+I +I+I TPG ++D+++ + + + + VLDEAD MLD G Q +I
Sbjct: 228 KI-----DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHL 282
Query: 288 IRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDR 347
+ + Q +++SAT+ + V++ A + + ++++ + ELS ++ ++ K +
Sbjct: 283 LPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNV 342
Query: 348 LAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFR 407
L + + Q IIF K T +EI + +G + G+ +RD ++ FR
Sbjct: 343 LVELYGLLTIGQS---IIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFR 399
Query: 408 SGRSPIMVATDVAARGI 424
G S ++V T+V ARGI
Sbjct: 400 VGTSKVLVTTNVIARGI 416
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 121 bits (303), Expect = 2e-27
Identities = 99/357 (27%), Positives = 175/357 (48%), Gaps = 30/357 (8%)
Query: 89 ESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMAL 148
E++ ++ + + ++G++ PI F E + + +K++ + T IQ P
Sbjct: 26 EAKKLQGITKGKAKVTGNNPVDPIEEFPEG----ILCENLKKQNITECTTIQRYAIPTIG 81
Query: 149 SGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSK 208
S RD++ A TGSGKT++Y P + + L PG G +++APTREL QI ++ K
Sbjct: 82 SKRDLLACAPTGSGKTIAYLFPILQKLQ---LHVPG-GYRAIIVAPTRELCEQIYRQAEK 137
Query: 209 --FGASSRI-----RNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRV 261
FG S +I N + PK L+ ++ I TP RL+ ++ G + ++V
Sbjct: 138 LSFGTSLKIIELSKSNEKIQEKAPK------LREKYDMCIGTPMRLVQAIQTG-LSFEKV 190
Query: 262 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL-MWSATWPKEVKQLASDYLHDPIQVQ 320
+ V+DEADR+ + GF Q I+ ++SAT P V++LA DPI++
Sbjct: 191 EFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRII 250
Query: 321 IGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYL 380
+G + + +++ V +D K L + + + +++IF + + L
Sbjct: 251 VGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNG--ELKPRVVIFVQDIERAKALYTEL 308
Query: 381 RTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIG-----MLLKFNF 432
+ IHG+ Q +R+ LA+FR G +++ATD+ ARGI M++ F+F
Sbjct: 309 LFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDF 365
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 121 bits (303), Expect = 2e-27
Identities = 75/179 (41%), Positives = 110/179 (60%), Gaps = 8/179 (4%)
Query: 251 LEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR----PDRQTLMWSATWPKEVK 306
++ G ++ YLVLDEADRMLDMGFEPQIR+IV+ R +R T M+SAT+PKE++
Sbjct: 1 MDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQ 60
Query: 307 QLASDYLHDP-IQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIII 365
LA D+L + + + +G + ++ + + +IV V D EKR L L+ S ++
Sbjct: 61 LLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEED-EKRSYLMDLLDATGDS--SLTLV 117
Query: 366 FASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
F TKR ++ YL + + + IHGD Q ER+ L FR+G +PI+VAT VAARG+
Sbjct: 118 FVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGL 176
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 120 bits (301), Expect = 4e-27
Identities = 95/348 (27%), Positives = 180/348 (51%), Gaps = 50/348 (14%)
Query: 121 PSYVLDEVKQEGFAKPTGIQCQGWPMALSGR-DMIGVAATGSGKTLSYCLPGIVHI---- 175
P+ VL+ ++Q GF++PT IQ P A+ R D++G A TGSGKTL++ +P + +
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESS 222
Query: 176 --NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233
+ + + GP L++APTREL +QI K + +++++ T + GG+ + +Q R +
Sbjct: 223 DDSQETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERII 282
Query: 234 -QRGVEILIATPGRLIDMLEIGKT-----NLKRVTYLVLDEADRMLDMGFEPQIRKIVDQ 287
Q+ +I++ATPGRL M++ +T K + LV+DE DRM++ G+ ++ I+++
Sbjct: 283 SQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNK 342
Query: 288 IRPDR-----QTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDF 342
I + QTL++SAT Q ++ + + + ELS+ I +++++
Sbjct: 343 IHEESEKEKLQTLVFSATLTFAKAQDVAE------EEKKKAKELSSQQKIQRLIKLTGLR 396
Query: 343 EKRDR---LAKHLETASQDQDSKI-----------------------IIFASTKRTCDEI 376
E + + L + + TA +++I I+F ++ +
Sbjct: 397 ENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSIDAARRL 456
Query: 377 TSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
S L++ + +H Q +R L +F ++ +++ATDVAARG+
Sbjct: 457 YSVLKSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGL 504
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 119 bits (299), Expect = 7e-27
Identities = 101/384 (26%), Positives = 190/384 (49%), Gaps = 41/384 (10%)
Query: 62 NWDEELPNLPV-FEKNFYQEH-----PDVAQMSES----EVIEFRKENEMTISGHDVPKP 111
+W E P P + NF + + PD ++ + I+F ++ + ++P
Sbjct: 638 HWGYECPTRPKDLQGNFLESYDFVFTPDDKMFEDAVNNDDKIDFDQKVVASTGKVEIPD- 696
Query: 112 IRSFDEAGF---PSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYC 168
+ SFD GF P + D +K+ +PT IQ + + G D++ A TGSGKTL++
Sbjct: 697 MASFD--GFKVLPQDLHDNLKRMKMNRPTPIQRASFFPIMHGDDVVACAHTGSGKTLAFL 754
Query: 169 LPGIVHINAQ-----PLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGG 223
+P ++ + + + P +L++APTREL Q + + ++ +GG
Sbjct: 755 IPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAFGG 814
Query: 224 VPKSQQIRDLQR--GVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLD-MGFEPQ 280
++ ++ L+ + IL+AT GRL D + G+ +L ++ Y+VLDEADRM+D + F +
Sbjct: 815 YSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSIDFGEE 874
Query: 281 IRKIVDQI-RPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLEL----SASHTITQI 335
+ KI+ +QT+++SA++ ++ L SD L ++ L++ +A+ I Q
Sbjct: 875 VSKIIGSPGERTQQTVLFSASFSED---LQSDDLPKFVKEGYTMLQVDKFGTANEKIDQK 931
Query: 336 VEVLTDFEKRDRLAKHLETASQD---------QDSKIIIFASTKRTCDEITSYLRTEGWP 386
+ + EKRD + K L + K +IF ++ + CD + + + + G
Sbjct: 932 ILPVPRTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVS 991
Query: 387 ALAIHGDKAQNERDWVLAEFRSGR 410
+++H + Q +RD L +FR G+
Sbjct: 992 TISMHSYQNQEQRDRTLDDFRRGK 1015
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 119 bits (299), Expect = 7e-27
Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 13/338 (3%)
Query: 91 EVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG 150
EV E R + E + P +SF+E G S ++ + ++G KPT IQ P L G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 151 RDMIGVAATGSGKTLSYCLPGIVHI-NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKF 209
+D++ A TGSGKTL+Y LP + + +A + P +L P+REL Q+ E S
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSL 143
Query: 210 GASSRIRNTCVYGGVPKSQQIRDLQRGV----EILIATPGRLIDMLEIGKTN----LKRV 261
R++ V + S D++ + EIL++TP + G + +
Sbjct: 144 IELCRVQLKAVQ--LTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESL 201
Query: 262 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQI 321
+ LVLDEAD +L G+E +R + I Q L+ SAT +V++L LH+PI + +
Sbjct: 202 SILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTL 261
Query: 322 GSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQD-QDSKIIIFASTKRTCDEITSYL 380
+ + + +D+L L + KI+IF +T + +L
Sbjct: 262 TEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFL 321
Query: 381 RTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATD 418
G + ++G+ QN R +L +F +G ++ATD
Sbjct: 322 EKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATD 359
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 119 bits (298), Expect = 9e-27
Identities = 102/329 (31%), Positives = 163/329 (49%), Gaps = 23/329 (6%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
S D+ VL V+ GF + T +Q P+ L+ +D+ A TGSGKTL++ +P +
Sbjct: 8 SLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLE 67
Query: 174 HINAQPLLSPGDGPI---VLVLAPTRELAVQIQKECSKFGASS---RIRNTCVYGGVPKS 227
+ + +P GP LV++PTRELA QI + ++F + + GG
Sbjct: 68 ILQRRHKETPW-GPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIE 126
Query: 228 QQIRDLQRGVE-ILIATPGRLIDMLEIGKTNL------KRVTYLVLDEADRMLDMGFEPQ 280
+ I L+R IL+ TPGRL D+ + +L K + +LVLDEADR+LD+GF+
Sbjct: 127 EDIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTS 186
Query: 281 IRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLT 340
+ I+ + R+T ++SAT EV L L +P+ V + E ++ +T ++
Sbjct: 187 VNNILGYLPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSV--KEKASVNTPARLQNFYR 244
Query: 341 DFEKRDRLAKHLETASQDQD--SKIIIFASTKRTCDEITSYLRTEGWP---ALAIHGDKA 395
E + LE S K+++F T C E + P L IHG K
Sbjct: 245 IVEPELKFVALLEFLSSPATVIGKVMVFFPT-CACVEYWAEALPPLLPKRTVLGIHG-KM 302
Query: 396 QNERDWVLAEFRSGRSPIMVATDVAARGI 424
+N+R V+ +FR+ +++ TDV ARG+
Sbjct: 303 KNKRANVVEKFRNTPQAVLLCTDVLARGL 331
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 119 bits (297), Expect = 1e-26
Identities = 100/364 (27%), Positives = 178/364 (48%), Gaps = 34/364 (9%)
Query: 74 EKNFYQEHPDVAQ------MSESEVIEFRKENEMTISGHDVPKPI---RSFDEAGFPSYV 124
EK Q+ +VA+ ++ IE + ++ G D + + F + G +
Sbjct: 3 EKTLIQDDKEVARELFTMIKHDTTAIETGLDGSISGVGTDRGQKLLVAEHFSDMGLSDEL 62
Query: 125 LDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPG 184
L + +GF KP+ IQ P L G +++ + +G+GKT++Y + + G
Sbjct: 63 LKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAYTCGVLGNTKI------G 116
Query: 185 DGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATP 244
+ V+V+ PTREL+ Q+ + S I+ V+ + +I D G E+++ +P
Sbjct: 117 ERTQVMVVTPTRELSTQVTEVISGLAGPLGIK---VFSAL--KNKITD-SIGEEVVVGSP 170
Query: 245 GRLIDMLEIGKTNLKRVTYLVLDEADRMLD---MGFEP-QIRKIVDQIRPDRQTLMWSAT 300
G ++ ++E+GK N K V +VLDEAD +LD MG + +I K++ Q + +SAT
Sbjct: 171 GTILKLMELGKLNYKGVKMIVLDEADILLDKDMMGTQTFRILKLIS----GAQMIFFSAT 226
Query: 301 WPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQD 360
+ ++VKQ Y D +++ E + ++ + + E + R K L
Sbjct: 227 FSEQVKQTIEFYAPDAVKMYE---ERNGKPDEIKLFYIEAEGENKRRALKSLYEYLSI-- 281
Query: 361 SKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVA 420
S++IIF STK T + + L + +HGD ER+ + +FRS +S I++ TDV
Sbjct: 282 SQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGDLEIEEREKAVGDFRSSKSKILLTTDVF 341
Query: 421 ARGI 424
+RG+
Sbjct: 342 SRGM 345
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 117 bits (294), Expect = 3e-26
Identities = 104/367 (28%), Positives = 170/367 (45%), Gaps = 36/367 (9%)
Query: 84 VAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQG 143
V + +E +E+E G DV ++ +L + + GF+KP IQ
Sbjct: 97 VTSKNYNEFSTLEEEDEHNSHGVDVS----AWAHFSLSPEMLGSLSKAGFSKPMPIQSLV 152
Query: 144 WPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIV--LVLAPTRELAVQ 201
P A G D+IG A TGSGKTL++ +P + H L D V LV+APTRELA Q
Sbjct: 153 IPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQ 207
Query: 202 IQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKT--NLK 259
I + S IR + GG+ +Q R L + +++ATPGRL ++ N K
Sbjct: 208 ICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFK 267
Query: 260 RVTYLVLDEADRMLDMGFEPQIRKIVD----QIRPDRQTLMWSATWP--------KEVKQ 307
++ LVLDEADR+L ++ K+++ + RQT ++SAT+ K +K
Sbjct: 268 KIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKG 327
Query: 308 LASDYLHDPIQVQIGSLELSA----------SHTITQIVEVLTDFEKRDRLAKHLETASQ 357
++ + P++ + + S ++++E L + ++ +L
Sbjct: 328 NITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEK-DLYLYYLIM 386
Query: 358 DQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVAT 417
K ++FA+ IT +L P+ +H Q +R L +F++ ++V T
Sbjct: 387 RYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCT 446
Query: 418 DVAARGI 424
DVAARGI
Sbjct: 447 DVAARGI 453
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 117 bits (294), Expect = 3e-26
Identities = 104/369 (28%), Positives = 164/369 (44%), Gaps = 83/369 (22%)
Query: 137 TGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ-PLLSPGDGPIVLVLAPT 195
T +Q + P L G+D++ + TGSGKTL+Y LP + + Q P + DG + LV+ PT
Sbjct: 352 TSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPT 411
Query: 196 RELAVQIQKECSKFGAS-SRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLID-MLEI 253
REL +Q + K + I + GG + + L++G+ ILI TPGRL+D +L
Sbjct: 412 RELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHT 471
Query: 254 GKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI-----------RPDRQTLMWSATWP 302
L ++ +L+LDEADR+L++G+E ++++V+ I P Q ++ SAT
Sbjct: 472 ASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLT 531
Query: 303 KEVKQLASDYLHDPIQVQIGSLELSAS---------HTITQIVEV---LTDFEK------ 344
+V+QLA L +P+ + SA+ TI ++EV L ++++
Sbjct: 532 SQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVL 591
Query: 345 ----------------------RDRLAKHLETASQDQDSKIIIFAS-------------- 368
LAK E + + K I+F S
Sbjct: 592 SIPENLQLSYVVVPPKLRLVALSSLLAK--EVDASPKQFKAIVFMSTTEMVNFHHDMLNE 649
Query: 369 --TKRTCDEITSYLR-----------TEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMV 415
T+R DE + +G +HG Q ER V FR S +++
Sbjct: 650 ALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLL 709
Query: 416 ATDVAARGI 424
ATDV RGI
Sbjct: 710 ATDVVGRGI 718
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 117 bits (293), Expect = 3e-26
Identities = 100/340 (29%), Positives = 155/340 (45%), Gaps = 33/340 (9%)
Query: 113 RSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 172
++F E G ++ +K++ F +P IQ + + G+ I +GSGKTL+Y +P I
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 173 VHINAQPLL-----SPGDGPIVLVLAPTRELAVQIQKECSKFGASS-RIRNTCVYGGVPK 226
+ + L SPG P V+VL PT ELA Q+ C S R+ V GG +
Sbjct: 434 QRLREEELQGHSKSSPGC-PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQ 492
Query: 227 SQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIV 285
Q+ +L++GV++LIATPGR ++ G L + +LDE D + D FE ++ ++
Sbjct: 493 RTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLI 552
Query: 286 DQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKR 345
+ Q L +AT P E+ + D +V +G S+ + E L D
Sbjct: 553 NSSPVTAQYLFVTATLPLEIYNKLVEVFPD-CEVVMGPRVHRVSNALE---EFLVDCSGD 608
Query: 346 DRLAKHLETASQDQD------------SKIIIFASTKRTCDEITSYL-----RTEGWPAL 388
D K ETA Q++ SK IIF + TC ++ + + L
Sbjct: 609 DNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVL 668
Query: 389 AIHGDKAQNERDWVLAEFRSGR----SPIMVATDVAARGI 424
H +Q R + EF S + S +V TD A+RGI
Sbjct: 669 PFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGI 708
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 115 bits (288), Expect = 1e-25
Identities = 93/321 (28%), Positives = 151/321 (46%), Gaps = 64/321 (19%)
Query: 114 SFDEAGFPSY-------VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLS 166
+FD+ F S L +K+ F T IQ + L GRD++ A TGS
Sbjct: 363 AFDDTSFASLSNLVNENTLKAIKEMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGS----- 417
Query: 167 YCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNT--CVYGGV 224
V + + P + P V +L+PTRELA+QI GA++ +T + GG
Sbjct: 418 ------VELTVKLKFMPTNRPGVFILSPTRELAMQIFG-----GANTHHMHTYGLIMGGD 466
Query: 225 PKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNL-KRVTYLVLDEADRMLDMGFEPQIRK 283
S + + L G+ I++ATPG L+D ++ + K + YLV+DEADR+LD+GFE ++++
Sbjct: 467 NTSAEAQKLANGINIIVATPGHLLDYMQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQ 526
Query: 284 IVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFE 343
I+ + R T++ SAT ++V+ LA I ++ G++
Sbjct: 527 IIKLLPTCRHTMLLSATQTRKVEDLAR------ISLKKGAI------------------- 561
Query: 344 KRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVL 403
+++ KI++F S+ + L P LAIHG + QN+
Sbjct: 562 -------------KNRKRKIMVFFSSSMSVKYHYELLNYMDLPILAIHGKQKQNKGTTTF 608
Query: 404 AEFRSGRSPIMVATDVAARGI 424
+F S I++ DVAARG+
Sbjct: 609 FQFCKADSGILLCMDVAARGL 629
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 115 bits (288), Expect = 1e-25
Identities = 90/322 (27%), Positives = 153/322 (46%), Gaps = 12/322 (3%)
Query: 109 PKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYC 168
P +++F+E +L+ +K+ F PT IQ PMAL+ D+I + +G+GKTL Y
Sbjct: 21 PGQVKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYV 80
Query: 169 LPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQ 228
+ + N + P +++ PTRELA+Q+Q S R + G
Sbjct: 81 IAVVQSFNPNI-----NQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVA 135
Query: 229 QIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQ 287
+ R ++I TPGRL+ + E ++ ++ LVLDEAD++ + + K+++
Sbjct: 136 KDRKRMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEA 195
Query: 288 IRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTD-----F 342
+ +RQ + SAT+ + + + + + P+ + S + I Q V L
Sbjct: 196 MPKNRQIIACSATYDQNLDERLAKVMDKPMLIS-NSERATVLLGIRQFVYELPQQNNSVE 254
Query: 343 EKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWV 402
E R +L + +Q + IIFAS++ D +YL G I G Q+ER V
Sbjct: 255 EMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHV 314
Query: 403 LAEFRSGRSPIMVATDVAARGI 424
+R+ I+VATD+ ARG+
Sbjct: 315 FEGYRNFTMRILVATDLMARGV 336
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 114 bits (286), Expect = 2e-25
Identities = 86/289 (29%), Positives = 139/289 (47%), Gaps = 7/289 (2%)
Query: 133 FAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGD-GPIVLV 191
F KPT +Q + P+AL G+D++ A TGSGKT +Y +P + + Q + G L+
Sbjct: 34 FEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALL 93
Query: 192 LAPTRELAVQIQKECSKFGA--SSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLID 249
L PTRELA Q+ K A S IR V + Q L +I+IATP R +
Sbjct: 94 LVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVV 153
Query: 250 MLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLA 309
+ G L ++ +LV+DEAD ML G+ ++ + + Q+ + SAT K + L
Sbjct: 154 HVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQ 213
Query: 310 SDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAST 369
+P + + E AS +TQ V ++ +K L ++ + KI+IF +
Sbjct: 214 KLVCRNPFILAVKDKE--ASGKLTQYVVKCSEQDK--FLLAYILLKLRLIKGKILIFVNE 269
Query: 370 KRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATD 418
C + +L G +L ++ + N R +L ++ G I++ATD
Sbjct: 270 INRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATD 318
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 114 bits (284), Expect = 4e-25
Identities = 107/366 (29%), Positives = 164/366 (44%), Gaps = 69/366 (18%)
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
+L ++ F +PT IQ + P+ + G D++G A+TGSGKTL+Y +P IV
Sbjct: 182 ILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIP-IVEKLISNFSQK 240
Query: 184 GDGPIVLVLAPTRELAVQI----QKECSKFGASSRIRNTCVYGG--VPKSQQIRDLQRGV 237
PI L+ PTRELA Q+ +K C A S+ + GG + K Q++
Sbjct: 241 NKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSG 300
Query: 238 EILIATPGRLIDMLEIGKTNLKR---VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-- 292
+I+IATPGR +++LE T +KR V L+LDEADR+L G + KI+ + +R
Sbjct: 301 QIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRK 360
Query: 293 ------------QTLMWSATW----------PKEVKQLA----SDYLHDPIQVQIGSLEL 326
QTL++SAT+ ++VK D L+ IQ + +
Sbjct: 361 NRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHF 420
Query: 327 SASHTI----------TQIVEVLTDFE--KRDRLAKHLETASQDQDSKIIIFASTKRTCD 374
++ I +QI E L + +RD + T +IF + +
Sbjct: 421 NSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMF---PGTTLIFCNAIDSVK 477
Query: 375 EITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGR----------------SPIMVATD 418
++T YL G PA IH Q R L F+ S +++A+D
Sbjct: 478 KLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASD 537
Query: 419 VAARGI 424
VAARG+
Sbjct: 538 VAARGL 543
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 113 bits (283), Expect = 5e-25
Identities = 81/297 (27%), Positives = 149/297 (49%), Gaps = 20/297 (6%)
Query: 132 GFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI-VL 190
GF KP+ IQ +G+D+ + GSGKT+ + + I+ + D + V+
Sbjct: 15 GFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDCE------DAHLQVI 68
Query: 191 VLAPTRELAVQIQKECSKFGASSRIRNTCV-YGGVPKSQQIRDLQRGVEILIATPGRLID 249
+LAP R +A + ++ G + + TC+ + ++ +I +L+ TP D
Sbjct: 69 LLAPQRGMAQRAHEQLKSLGRNLNVNATCLGFDTTAENDKIS------HVLMGTPK---D 119
Query: 250 MLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLA 309
L ++ R+ VLDEAD ML GF+ QI ++ + D Q ++ SAT P EV +
Sbjct: 120 FLSNIPSDTSRIKMFVLDEADEMLSKGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVT 179
Query: 310 SDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFAST 369
+ ++ DPI++ + EL+ + V D K + L L+T+ ++++ +IF +T
Sbjct: 180 NRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDLLKTS---RETQALIFCNT 236
Query: 370 KRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGM 426
+R ++T L + HG+ NER+ ++ +F S + ++V TD+ ARG+ +
Sbjct: 237 RRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMARGMNI 293
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 112 bits (281), Expect = 8e-25
Identities = 84/318 (26%), Positives = 148/318 (46%), Gaps = 14/318 (4%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F+ G +L V G+++PT IQ + P+AL G+D++ A TGSGKT +Y +P +
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 175 INAQPLLSPGDGPIV------LVLAPTRELAVQIQKECSKFG--ASSRIRNTCVYGGVPK 226
+ L GP+V LVL PT+ELA Q Q + + +R V
Sbjct: 69 L----LHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDS 124
Query: 227 SQQIRDLQRGVEILIATPGRLIDMLEIGKTNLK-RVTYLVLDEADRMLDMGFEPQIRKIV 285
Q L ++++ TP R++ L+ L+ + LV+DEAD + GFE +++ ++
Sbjct: 125 VSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLL 184
Query: 286 DQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKR 345
+ Q + SAT+ ++V+ L LH+P+ +++ +L + Q V E +
Sbjct: 185 CHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDK 244
Query: 346 DRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAE 405
L L S + K ++F +T + +L P ++G+ R ++++
Sbjct: 245 FLLLYALLKLSLIR-GKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQ 303
Query: 406 FRSGRSPIMVATDVAARG 423
F G ++ATD G
Sbjct: 304 FNQGFYDCVIATDAEVLG 321
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 112 bits (280), Expect = 1e-24
Identities = 93/323 (28%), Positives = 158/323 (48%), Gaps = 31/323 (9%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F++ + +++ GF +Q + PMAL G D+IG + TG+GKTL++ +P +
Sbjct: 6 FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTL-- 63
Query: 175 INAQPLLS----PGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQI 230
Q L+S GDG LV+ PTRELA+QI S+ + + + GG+ ++
Sbjct: 64 ---QRLVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAEDEL 120
Query: 231 RDLQRGVEILIATPGRLIDMLEIGK-TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
+ + + IL+ TPGRL+ L+ + V L+LDEAD+M++MGF+ + I++ I
Sbjct: 121 LKVNQ-MNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIP 179
Query: 290 PDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLA 349
+QTL++SAT ++ L DP + I E S + Q ++ +K + L
Sbjct: 180 QKKQTLLFSATPKASTARILK--LEDPRIISIYKEEGFPSQ-LRQYFYMMRTGDKINYL- 235
Query: 350 KHLETASQDQDSKIIIFASTKRTCDEITSY--------LRTEGWPALAIHGDKAQNERDW 401
H S + I+ F+ TC E+ + LR + G +Q +R
Sbjct: 236 -HTFIGSNPEVKGIVFFS----TCKEVKFHCLLFERLKLRNR---IFCLSGGMSQKQRID 287
Query: 402 VLAEFRSGRSPIMVATDVAARGI 424
V F ++ I+ TD+ +RG+
Sbjct: 288 VFKRFVKEKNGILFCTDLGSRGL 310
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 111 bits (278), Expect = 2e-24
Identities = 97/300 (32%), Positives = 149/300 (49%), Gaps = 33/300 (11%)
Query: 152 DMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSK--- 208
D+I A TG+GKT ++ +P H+ S V+V APTR+LA+QI+ E K
Sbjct: 147 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIV-APTRDLALQIEAEVKKIHD 205
Query: 209 -------FGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKR- 260
+ S + T + K ++R I+IATPGRLID+LE R
Sbjct: 206 MNYGLKKYACVSLVGGTDFRAAMNKMNKLRP-----NIVIATPGRLIDVLEKYSNKFFRF 260
Query: 261 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-------QTLMWSATWPKEVKQLASDYL 313
V Y VLDEADR+L++GF + I + +TL++SAT +V++LA++ +
Sbjct: 261 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM 320
Query: 314 HDPIQVQIGSL---ELSASHTITQIVEVLTDFEKRDRLA-KHLETASQDQDS--KIIIFA 367
+ + + ++ E A I Q V + F A +H++ +++DS K IIFA
Sbjct: 321 NKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA 380
Query: 368 STKRTCDEITSYLRTE---GWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
T + + S L+ E P L HG QN+R ++ F+ S I+V TDV ARG+
Sbjct: 381 PTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 440
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 111 bits (278), Expect = 2e-24
Identities = 71/274 (25%), Positives = 138/274 (49%), Gaps = 12/274 (4%)
Query: 152 DMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGA 211
DM+ A +G+GKTL + + + +++++ +++ PTRE++VQI++ K
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSR-----SSHIQKVIVTPTREISVQIKETVRKVAP 105
Query: 212 SSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADR 271
+ + V G K I Q +I+I TPGR+ ++++G N+ V + VLDEAD+
Sbjct: 106 TGARTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADK 165
Query: 272 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHT 331
++D F I I++ + RQ ++SAT+P+ + L S +L D V+ + ++
Sbjct: 166 LMDEVFRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGI 225
Query: 332 ITQIVEVLTD-FEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAI 390
+V + EK + K + + ++F C+ I ++L++ G +
Sbjct: 226 KQYVVAKCSPMLEKLTHVLKSIRYV------QALVFCDQISKCEPIATHLKSSGLDVTFV 279
Query: 391 HGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+Q +R + + R+ R I+V++D+ ARGI
Sbjct: 280 SSAMSQKDRQLAVDQLRAKRVKILVSSDLTARGI 313
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 111 bits (278), Expect = 2e-24
Identities = 81/310 (26%), Positives = 150/310 (48%), Gaps = 3/310 (0%)
Query: 113 RSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 172
++F + G +L + + G+ K +Q +AL ++++G A TGSGKT ++ +P +
Sbjct: 89 KTFADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLV 148
Query: 173 VHINAQPLLSPGD-GPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIR 231
+ A+ + G GP +++APT+EL QI K K + + + +
Sbjct: 149 QKLIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDINEEENSV 208
Query: 232 DLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 291
L+ +++ TPG+L+ M + V+YLV+DEAD +L G+E ++ KI ++ P
Sbjct: 209 WLEDRSHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLPPT 268
Query: 292 RQTLMWSATWPKEVKQLASDYLHDP-IQVQIGSLELSASHTITQIVEVLTDFEKRDRLAK 350
Q LM SAT ++ L ++ P I +++ +L S +TQ E+R +
Sbjct: 269 YQCLMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSDEERFAILV 328
Query: 351 HLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGR 410
+ + I+F +T C ++ LR G + ++ N R V+ +F G
Sbjct: 329 AMFKLKLIV-GRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGS 387
Query: 411 SPIMVATDVA 420
I++A+DV+
Sbjct: 388 YQIVIASDVS 397
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 111 bits (278), Expect = 2e-24
Identities = 98/328 (29%), Positives = 159/328 (47%), Gaps = 23/328 (7%)
Query: 109 PKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYC 168
P +++F E P + EV + + T +Q L+ D++ + TGSGKTL++
Sbjct: 7 PVALKTFREKLGPELL--EVFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFV 64
Query: 169 LPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQ 228
LP ++ + L P D L+L+P+REL QI F + V GG +
Sbjct: 65 LP-MMRMIQNAKLQPADIG-ALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDK 122
Query: 229 QIRDLQ-RGVEILIATPGRLIDMLEIGKTNLKR----VTYLVLDEADRMLDMGFEPQIRK 283
I+ + + V IL+ATPGRL +++ KT + R + LV+DEADR ++ FE +R+
Sbjct: 123 NIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMRE 182
Query: 284 IVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQ--IVEVLTD 341
I+ I R+T ++SAT KE L L + QV++ SA+ + + VE D
Sbjct: 183 ILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRAD 242
Query: 342 FEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLR-----TEGWPALAIHGDKAQ 396
++ + LE Q D KI+IF +C+ + + + P A+HG +
Sbjct: 243 ----EKTSVCLEFIRQRTDKKILIFFP---SCNSVRYFYKIFERCLGKRPLFAVHGKCSN 295
Query: 397 NERDWVLAEFRSGRSPIMVATDVAARGI 424
R + F + +M++TDV ARGI
Sbjct: 296 PHRASQIKAFSDSTNGVMISTDVMARGI 323
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 111 bits (277), Expect = 2e-24
Identities = 92/329 (27%), Positives = 156/329 (46%), Gaps = 25/329 (7%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
SF ++ + V +GF K T +Q P+ L +D++ A TGSGKTL+Y LP
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQI---QKECSKF------GASSRIRNTCVYG-G 223
+ + G G L++APTRELA QI KE + G + + + G G
Sbjct: 62 KVTRRDTDETGLG--ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKG 119
Query: 224 VPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRK 283
+ ++ ++I TPGRL +ML + K + L+LDEAD ++DMGF+ ++
Sbjct: 120 TLTNDLASFREKNPSVVIGTPGRLNEML--SHISSKHLEILILDEADTLIDMGFQRTLQS 177
Query: 284 IVDQIRPDRQTLMWSATWPKEVKQ-LASDYLHDPIQVQI----GSLELSASHTITQIVEV 338
I+ Q+ R+T ++SAT V L L + ++V + ++ ++ V
Sbjct: 178 IISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLV 237
Query: 339 LTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWP--ALAIHGDKAQ 396
+ K + L T + K I+F S+ + + S T P +A+HG + Q
Sbjct: 238 IPPIYKVQCMIHLLCTIEYE---KAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQ 294
Query: 397 NERDWVLAEF-RSGRSPIMVATDVAARGI 424
+ R +F +S + ++ TD+A+RG+
Sbjct: 295 SNRSRNFEKFKKSNKKTVLFTTDIASRGL 323
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 111 bits (277), Expect = 2e-24
Identities = 95/302 (31%), Positives = 148/302 (48%), Gaps = 24/302 (7%)
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLP--GIVHINAQPLL 181
VL +++ GF T +Q P+ + +D+ A TGSGKTL++ +P I+ + L
Sbjct: 20 VLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLK 79
Query: 182 SPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVY--GGVPKSQQIRDLQRGVEI 239
G I++ PTRELA+QI + S F + ++ G P R Q+G I
Sbjct: 80 KSQVGAIIIT--PTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNI 137
Query: 240 LIATPGRLIDMLEIGKTNL------KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
++ATPGRL DM L + + LVLDEADR+LDMGFE I I++ + R+
Sbjct: 138 IVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRR 197
Query: 294 TLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHT------ITQIVEVLTDFEKRDR 347
T ++SAT +EV+ L L +P++V + ++AS + V EK ++
Sbjct: 198 TGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQ 257
Query: 348 LAKHLETASQDQDSKIIIFASTKRTCDEITSYLR--TEGWPALAIHGDKAQNERDWVLAE 405
L L Q+ K ++F ST + L +G + IHG K + +R+ + E
Sbjct: 258 LVHFLRNHKQE---KHLVFFSTCACVEYYGKALEVLVKGVKIMCIHG-KMKYKRNKIFME 313
Query: 406 FR 407
FR
Sbjct: 314 FR 315
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 111 bits (277), Expect = 2e-24
Identities = 92/345 (26%), Positives = 163/345 (46%), Gaps = 27/345 (7%)
Query: 102 TISGHDVPKPIRSFDE----AGFPSY--VLDEVKQE-GFAKPTGIQCQGWPMALSGRDMI 154
++ G ++ + +++ DE G + +L+ ++ E G TGIQ QG P+ +
Sbjct: 91 SVRGEELQQEMQTVDEFLESTGMQIHPQLLENLRVELGIKLLTGIQKQGMPVVHGNEHCL 150
Query: 155 GVAATGSGKTLSYCLPGIVHINAQPLLSPG--DGPIVLVLAPTRELAVQIQKECSKFGAS 212
A TG GKT++Y LP + + + +++ + P VL+L P RELA QI K
Sbjct: 151 IAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVLILTPGRELATQIAGVTEKLTQG 210
Query: 213 SRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRM 272
+ ++ + GG K + V+IL+AT G L ++ G +++V +LVLDEAD +
Sbjct: 211 TNLKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSKLVTTGIYRMEQVRHLVLDEADTL 270
Query: 273 LDMGFEPQIR--------KIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSL 324
LD F ++ +V + Q ++ SAT P +++ LH I V
Sbjct: 271 LDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTREI----LHKVIDVDT-IR 325
Query: 325 ELSASH---TITQIVEVLTDFEKRDRLAKHLETASQDQDSK--IIIFASTKRTCDEITSY 379
E+ + H ++ + + K DR A L D + +I+F++ T D ++ +
Sbjct: 326 EVVSPHLHRLMSHVTQKFLRLSKADRPATLLSLVKHDLAKRRPLIVFSNKSTTSDFVSIF 385
Query: 380 LRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
L G L ++GD R +F++G ++ TDV +RG+
Sbjct: 386 LNNSGVNCLNLNGDMLMKIRLGRFEQFQNGHCDVLSTTDVGSRGL 430
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 110 bits (276), Expect = 3e-24
Identities = 102/389 (26%), Positives = 170/389 (43%), Gaps = 83/389 (21%)
Query: 119 GFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGR-DMIGVAATGSGKTLSYCLP---GIVH 174
G P+ +L + ++GF PT IQ P A+ G+ D++G A TGSGKTL++ +P GI+
Sbjct: 221 GVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIME 280
Query: 175 INAQPLLS--------PGDGP--------------------------------------- 187
+ + + S G P
Sbjct: 281 LKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPPEELDHVSGASDEESDAEEQAQRVQTP 340
Query: 188 -IVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGR 246
LVL PTRELAVQ++ + IR ++GG+ ++Q R L++ +I++ATPGR
Sbjct: 341 LYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGR 400
Query: 247 LIDMLEIGKTNLKR---VTYLVLDEADRMLDMGFEPQIRKIV------DQIRPDRQTLMW 297
L ++ G +L + V++LV+DE DRM++ G ++R ++ +Q + RQ ++
Sbjct: 401 LWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFVY 460
Query: 298 SATW------------------PKEVKQLASDYLHDPI-QVQIGSLELSASHTITQIVEV 338
SAT PK VKQ + I ++ I ++ + Q +
Sbjct: 461 SATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSSQQTAQT 520
Query: 339 LTDFE---KRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKA 395
LT+ D HL Q + I+F ++ + + L +H +
Sbjct: 521 LTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMI 580
Query: 396 QNERDWVLAEFRSGRSPIMVATDVAARGI 424
Q +R L FR + +++ATDVAARG+
Sbjct: 581 QKQRLKNLERFRDSPTGLLIATDVAARGL 609
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 110 bits (274), Expect = 5e-24
Identities = 87/296 (29%), Positives = 137/296 (45%), Gaps = 57/296 (19%)
Query: 185 DGPIVLVLAPTRELAVQIQ---KECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILI 241
+ P L++ P+RELA Q K+ K+ + ++R + GGV Q+ L+ GV+I++
Sbjct: 285 NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV 344
Query: 242 ATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKI---VDQIRPD---RQTL 295
TPGRL D++ GK NL +V +LVLDEAD +L G+ I ++ + Q+ D Q +
Sbjct: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI 404
Query: 296 MWSATWPK-EVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKR--DRLAK-H 351
+ SAT +VK+L+ +H P V + E S T+ +V + R +RL K H
Sbjct: 405 VCSATLHSFDVKKLSEKIMHFPTWVDLKG-EDSVPDTVHHVVVPVNPKTDRLWERLGKSH 463
Query: 352 LET----------------------------------ASQDQDSKIIIFASTKRTCDEIT 377
+ T + + + IIF TK CD +
Sbjct: 464 IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE 523
Query: 378 SYLRTEG---------WPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
Y +G + + +HGD+ +ER L F+ G ++ TDVAARGI
Sbjct: 524 QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI 579
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 108 bits (270), Expect = 2e-23
Identities = 94/337 (27%), Positives = 152/337 (44%), Gaps = 28/337 (8%)
Query: 114 SFDEAGFPSYVLDEVKQEG--FAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
SF + G VL +++ +PT +Q P L GR ++ A TGSGKTLSY LP
Sbjct: 127 SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPL 186
Query: 172 IVHINAQPLLS--PGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQ 229
+ + QP L P P LVL P+RELA Q++ G S + + GG +
Sbjct: 187 LQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRI 246
Query: 230 IRDLQR--GVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIV-- 285
L R ++L+ATPG L L+ +L+++++LVLDEAD +LD F + I+
Sbjct: 247 RLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEK 306
Query: 286 -----------DQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQ 334
D P Q ++ AT+P+ V QL + I S +L +
Sbjct: 307 SHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHC--IMPH 364
Query: 335 IVEVLTDFEKRDRLA------KHLETASQDQDS-KIIIFASTKRTCDEITSYLRTEGWPA 387
+ + + D++A KH + A + S +++F ++ T + + L
Sbjct: 365 VKQTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQH 424
Query: 388 LAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
L + G R + F+ I++ TD+A+RG+
Sbjct: 425 LRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGL 461
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 105 bits (263), Expect = 1e-22
Identities = 86/316 (27%), Positives = 153/316 (48%), Gaps = 13/316 (4%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG-RDMIGVAATGSGKTLSYCLPGI 172
+F+ S +L +K GF PT IQ P+AL RD+I AATGSGKTL+Y +P I
Sbjct: 18 TFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVI 77
Query: 173 VHI-NAQPLLSPGD--GPIVLVLAPTRELAVQIQKECSK--FGASSRIRNTCVYGGVPKS 227
I + + G+ G + ++L PTRELA Q+ K S IR + + S
Sbjct: 78 ETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMSDS 137
Query: 228 QQIRDLQRGVEILIATPGRLIDMLE--IGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIV 285
L EI++ TPG+L+D+L+ I +L + +LV+DE D +L G++ + KI
Sbjct: 138 VLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIG 197
Query: 286 D--QIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSAS-HTITQIVEVLTDF 342
+ ++ + QT + SAT +++ L + P ++ E++ + + + Q +++F
Sbjct: 198 EYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVKVSEF 257
Query: 343 EKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWV 402
+K L ++ K +IF + + + G + ++ + N R +
Sbjct: 258 DK--FLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQHI 315
Query: 403 LAEFRSGRSPIMVATD 418
+ +F +++ATD
Sbjct: 316 VDQFNKNVYQLLIATD 331
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 105 bits (263), Expect = 1e-22
Identities = 86/330 (26%), Positives = 150/330 (45%), Gaps = 26/330 (7%)
Query: 112 IRSFD---EAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYC 168
IR FD + G +L + GF P+ IQ + GRD+ A +G+GKT ++
Sbjct: 34 IRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFA 93
Query: 169 LPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQ 228
+ + + D +LVLA TRE+A Q G R + GG P +
Sbjct: 94 VAALQICDMSQ-----DVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAA 148
Query: 229 QIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI 288
L++ I++ TPGR+ M+ I + ++ + V+DEAD ML GF+ Q++ I +I
Sbjct: 149 DKVALEKKPHIVVGTPGRVEHMININELSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRI 208
Query: 289 --RPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEK-- 344
+ + Q M+SAT+ +E +++ + L +P+ + + + T+ I + D K
Sbjct: 209 TNKDEVQIAMFSATYDEEELRVSEEILINPVIIDLRYND----QTLKGIRQYFIDLRKEP 264
Query: 345 ------RDRLAKHLETA----SQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDK 394
D L L T + + + I+F ++K + +L W I +
Sbjct: 265 PFRKGREDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHEWECELISAEL 324
Query: 395 AQNERDWVLAEFRSGRSPIMVATDVAARGI 424
Q ER+ L FR G ++++ + +RGI
Sbjct: 325 TQAERERTLNRFRGGTGRCLISSGLLSRGI 354
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 105 bits (263), Expect = 1e-22
Identities = 100/345 (28%), Positives = 151/345 (42%), Gaps = 56/345 (16%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGK---------- 163
+F E +L + G+ KPT IQ Q P RD+ A TGSGK
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQVQFIPQ--EWRDLCASAITGSGKVSTRLMVLCN 225
Query: 164 ----------TLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASS 213
T ++ LP + + +P VL+L PTRELAVQI +
Sbjct: 226 TEILFRYLTNTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFT 283
Query: 214 RIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRM 272
I+ + GG+ +Q L+ +I++ATPGR+ID L + +L + L+LDEADR+
Sbjct: 284 DIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 343
Query: 273 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTI 332
L GF +I ++V RQT+++SAT +EVK+L L+ P+++ S + SA
Sbjct: 344 LQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRL---SADPSARRPP 400
Query: 333 TQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHG 392
E L +F + TK+ + G A +HG
Sbjct: 401 GLTEEYLREFFVPS------------------CASGTKQAAHRLKILFGLAGLKAAELHG 442
Query: 393 DKAQNERDWV----------LAEFRSGRSPIMVATDVAARGIGML 427
+ Q +R V L FR ++ATDVAARG+ ++
Sbjct: 443 NLTQAQRLDVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDII 487
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 105 bits (263), Expect = 1e-22
Identities = 85/309 (27%), Positives = 148/309 (47%), Gaps = 8/309 (2%)
Query: 115 FDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVH 174
F E +L V Q G+ +PT IQ P+ L G+D++ A TGSGKT +Y LP I
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 175 INAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKF----GASSRIRNTCVYGGVPKSQQI 230
I L + +VLAPT++L Q +K + G R+ + +Q+
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQR- 129
Query: 231 RDLQRGVEILIATPGRLIDMLEIGK-TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
L +I++ATP L+ E G +LK V LV+DEAD + G+E ++++ +
Sbjct: 130 HALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLP 189
Query: 290 PDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLA 349
P Q ++ SAT +V ++ L++P+ +++ EL ++ + + +K L
Sbjct: 190 PIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILY 249
Query: 350 KHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSG 409
L+ + K IIF ++ C ++ +L G A ++ + N R +++F G
Sbjct: 250 ALLKL--RLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKG 307
Query: 410 RSPIMVATD 418
I++A+D
Sbjct: 308 TYDIIIASD 316
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 104 bits (260), Expect = 2e-22
Identities = 115/379 (30%), Positives = 174/379 (45%), Gaps = 63/379 (16%)
Query: 111 PIRSFDEAG--FPSYVLDEVKQE-GFAKPTGIQCQGWPMALS--GRDMIGVAATGSGKTL 165
PI++ + AG + + D + + + PT IQ P L+ +D A TGSGKTL
Sbjct: 134 PIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTL 193
Query: 166 SYCLPGIVHINAQP--LLSPGDGPIVLVLAPTRELAVQIQKECSKFG---ASSRIRNTCV 220
+Y LP + + P L + G +++APTREL QI +K S I + V
Sbjct: 194 AYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNV 253
Query: 221 YGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKT-NLKRVTYLVLDEADRMLDMGFEP 279
GG K + +++GV ILI TPGRL D LE + ++ +V ++VLDE DR++DMGFE
Sbjct: 254 IGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEE 313
Query: 280 QIRKIVDQIR------------PDRQ-TLMWSATWPKEVKQLASDYLHDPIQVQIGSLEL 326
+ KI+ + P R+ T++ SAT VK+L+ L D + ++ +E
Sbjct: 314 TLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEE 373
Query: 327 S---ASHTITQIVEVLTDFEKRDRLAKHLETASQDQDS--KIIIFASTKRT--------- 372
+ S Q+++ + RL + S KIIIF S +
Sbjct: 374 TNDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFR 433
Query: 373 ----CDEITSYLR----TEG-----WPALAI---------HGDKAQNERDWVLAEFRSGR 410
DE+ ++ +EG PAL I HG +Q R L F S
Sbjct: 434 CAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSE 493
Query: 411 ---SPIMVATDVAARGIGM 426
S I++ TDVAARG+ +
Sbjct: 494 DSGSHILLCTDVAARGLDL 512
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 104 bits (259), Expect = 3e-22
Identities = 87/302 (28%), Positives = 143/302 (46%), Gaps = 21/302 (6%)
Query: 133 FAKPTGIQCQGWPMALSG--RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVL 190
F KP+ IQ PM ++ + +I A GSGKT + L + ++ P L P L
Sbjct: 112 FEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQAL 166
Query: 191 VLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQ-----IRDLQRGVEILIATPG 245
+ PTRELA Q + K G + I VP S + R ++I TPG
Sbjct: 167 CICPTRELANQNMEVLQKMGKFTGITAELA---VPDSTRGAPAATRGAPVSAHVVIGTPG 223
Query: 246 RLIDMLEIGKTNLKRVTYLVLDEADRMLDM-GFEP---QIRKIVDQIRPDRQTLMWSATW 301
L + + L + LV DEAD ML GF +I K + ++ P+ Q L++SAT+
Sbjct: 224 TLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATF 283
Query: 302 PKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDS 361
+ VK + + DP Q+ + +L A ++ Q V + + + K +
Sbjct: 284 NETVKDFVARTVKDPNQLFVKREDL-ALDSVKQYKVVCPKEQNKIEVIKD-QIMELGDIG 341
Query: 362 KIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAA 421
+ IIF TK + ++ L G+ ++HG+ +++RD ++ EF+ + +++ATDV A
Sbjct: 342 QTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIA 401
Query: 422 RG 423
RG
Sbjct: 402 RG 403
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 103 bits (257), Expect = 5e-22
Identities = 102/360 (28%), Positives = 172/360 (47%), Gaps = 41/360 (11%)
Query: 81 HPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQ------EGFA 134
+P V + +++++E K + D P+P RS P V + K+ F
Sbjct: 18 NPLVLRSLKNKILEKTKSRKQMACTVDTPRPWRS------PRIVSNGSKEPLTEWPSSFN 71
Query: 135 K------PTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI 188
K PT +Q P L+G + ++ TGSGKTLSY LP HI+ LL GD +
Sbjct: 72 KGLLPPHPTDVQRFVIPYILAGEGVDVISETGSGKTLSYVLP---HIH---LLESGDKRL 125
Query: 189 VLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLI 248
LV+ PTREL Q+ + KF + +R + G V Q + R ++ I+TPGRL
Sbjct: 126 -LVIVPTRELVSQVGQVFRKF-SEGLLRIVEITGEVSIESQRLQVSRPFDVAISTPGRLR 183
Query: 249 DMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT---WPKEV 305
++LE+ ++ Y+V+DEADR++ + I+++++P+ + +SAT W
Sbjct: 184 ELLEL--KSIGGFEYVVVDEADRLMQHDIRSDVTFILERMKPEVAS-FFSATPFEWSGGT 240
Query: 306 KQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQD-SKII 364
+ L + + V+ + + + + E+L E LAK++ + KII
Sbjct: 241 RILVGN-VSVGRDVEEFFMYVEKKEKMQVLGEILVSCE--GWLAKNMGVDRNGLEVKKII 297
Query: 365 IFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
+F ++ RTC+ + R L +H + ER V+ E G +++ATD+ RGI
Sbjct: 298 VFCNSIRTCENLHKRFR----QLLVLHSRRTMQERKAVI-EALEGERAVLIATDLGGRGI 352
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 102 bits (254), Expect = 1e-21
Identities = 96/325 (29%), Positives = 152/325 (46%), Gaps = 12/325 (3%)
Query: 110 KPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAA-TGSGKTLSYC 168
+P + A S + + + GF K T +Q + + V A TG+GKTL++
Sbjct: 35 QPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFL 94
Query: 169 LPGIVHI-NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKS 227
L + +P L+ V +L+PTRELA+QI +E K + IR + GG K
Sbjct: 95 LVAFKDVLKGKPRLNSSKIHSV-ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKM 153
Query: 228 QQIRDLQRG-VEILIATPGRLIDMLEIGKTNLKRVT-YLVLDEADRMLDMGFEPQIRKIV 285
++ ++RG +LIATPGRL D L+ + T +LDEADR++DMGF I I
Sbjct: 154 REENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIH 213
Query: 286 DQIRPDR-QTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQ----IVEVLT 340
+ + + + L +SAT P +V + L ++ I L+ + T + ++E
Sbjct: 214 EAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKL-INCLDPNEPPTHERVPQFVIETKL 272
Query: 341 DFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTE-GWPALAIHGDKAQNER 399
D L+ + S + S+II+F T D + L P +H +R
Sbjct: 273 DKVFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQR 332
Query: 400 DWVLAEFRSGRSPIMVATDVAARGI 424
+ FR +S I+ ATDV ARG+
Sbjct: 333 RSITESFRKCQSGILFATDVVARGM 357
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 102 bits (253), Expect = 1e-21
Identities = 92/391 (23%), Positives = 171/391 (43%), Gaps = 67/391 (17%)
Query: 100 EMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMAL-SGRDMIGVAA 158
E + ++P ++ ++ + + F +PT IQ + +A G+D+IG A
Sbjct: 178 EEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAE 237
Query: 159 TGSGKTLSYCLPGIVHI--------------NAQPLLSPGDGPI-VLVLAPTRELAVQIQ 203
TGSGKTL++ LP + + + DG + L++ PTRELA+Q+
Sbjct: 238 TGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVT 297
Query: 204 KECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGK---TNLKR 260
+ + ++ + GG+ +Q R L+ EI++ATPGRL +++ G+ L
Sbjct: 298 EHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHS 357
Query: 261 VTYLVLDEADRMLDMGFEPQIRKIVDQI------------------------RPDRQTLM 296
+++ VLDEADRM++ G +++ I+D + + RQT +
Sbjct: 358 LSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFV 417
Query: 297 WSAT------WPKEVKQLASDYLHDPIQVQIGSLEL-----------------SASHTIT 333
+SAT + K++K+ S ++ S+E+ + S
Sbjct: 418 FSATIALSSDFRKKLKR-GSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAP 476
Query: 334 QIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGD 393
+I E E++++ A S + I+F ++ I+ L+ G + +
Sbjct: 477 KIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSE 536
Query: 394 KAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
Q R + FR+ + I++ATD+ ARGI
Sbjct: 537 MKQRARLKSIDRFRASENGILIATDLVARGI 567
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 101 bits (251), Expect = 3e-21
Identities = 85/300 (28%), Positives = 148/300 (49%), Gaps = 21/300 (7%)
Query: 130 QEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIV 189
++ F T IQ W G ++ G+A TG+GKTL++ LP + I+ + + V
Sbjct: 12 EQQFKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRIDPKVKQTQ-----V 66
Query: 190 LVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGV-EILIATPGRLI 248
L+LAP++ELA+Q ++GA + T + GG +Q L++ I++ T GR++
Sbjct: 67 LILAPSQELAMQTTAVAREWGALVDVSVTSLIGGANGRRQADKLKKDKPHIVVGTLGRVL 126
Query: 249 DMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308
ML+ G L + ++ DEAD ML ++ + Q+ D Q ++SAT ++K +
Sbjct: 127 TMLDGGALKLNGLQTVIFDEADAMLSDERRDSLQALAAQLPTDVQLGLFSATSGVDLKYV 186
Query: 309 ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKH---LETASQDQDSKIII 365
A + + V +G+ A IT +F+ D+ AK ++ A Q + ++
Sbjct: 187 ADTFGQEVRPVSVGT---DAPAAITH------EFQYVDQKAKASLLIQLARNKQQA--LV 235
Query: 366 FASTKRTCDEITSYLRTEGWPALAI-HGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
F +T + + LR ++I DK Q +R L F+ G +++ TDVAARG+
Sbjct: 236 FFNTISGLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKKGEVSLLLVTDVAARGL 295
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 101 bits (251), Expect = 3e-21
Identities = 84/300 (28%), Positives = 145/300 (48%), Gaps = 20/300 (6%)
Query: 132 GFAKPTGIQCQGWPMALSG--RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIV 189
GF +P+ IQ PM L+ +++I + +G+GKT ++ L + +NA L P
Sbjct: 2 GFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELF-----PQC 56
Query: 190 LVLAPTRELAVQ---IQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGR 246
L LAPT ELA+Q + ++ KF ++ +P+ I +I+I TPG
Sbjct: 57 LCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK-----QIIIGTPGT 111
Query: 247 LIDM-LEIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKE 304
++D ++ +L ++ VLDEAD M+D GF +I + + Q L++SAT+
Sbjct: 112 VLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDS 171
Query: 305 VKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKII 364
V A + DP +++ EL+ ++ I Q VL + K D+ + I
Sbjct: 172 VWHFAERIIPDPNVIKLRKEELTLNN-IRQYY-VLCEHRK-DKYQALCNIYGSITIGQAI 228
Query: 365 IFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
IF T+R +T + +G + G+ +R ++ FR G+ +++ T+V ARGI
Sbjct: 229 IFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGI 288
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 101 bits (251), Expect = 3e-21
Identities = 90/326 (27%), Positives = 139/326 (42%), Gaps = 61/326 (18%)
Query: 158 ATGSGKTLSYCLPGIVHINAQPLLSPGDG----------PIVLVLAPTRELAVQIQKECS 207
A G+G + C G H A P+ P G P +++ P+RELA Q +
Sbjct: 249 APGNG-FVGACQAGPEHSKANPITGPAAGAPSAKPAPNAPQAIIMEPSRELAEQTYNQIE 307
Query: 208 KFG---ASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYL 264
KF ++ +R+ + GGV +Q L +G I++ TPGRL +M+ G L +
Sbjct: 308 KFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGRLEEMINSGLVLLTHCRFF 367
Query: 265 VLDEADRMLDMGF-------EPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPI 317
VLDEAD +L G+ QI KI R + + + EVK++A +H P
Sbjct: 368 VLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVVCSATLHAFEVKKMAERLMHFPT 427
Query: 318 QVQIGSLELSASHTITQIV-----EVLTDFEK----------RDRLAKH-----LETASQ 357
V + E + T+ +V ++ T ++ DR H ET SQ
Sbjct: 428 WVDLKG-EDAVPETVHHVVCLVDPQMDTTWQSLRQPIGTDGVHDRDNVHPGNHSKETLSQ 486
Query: 358 ----------------DQDSKIIIFASTKRTCDEITSYLRTEG---WPALAIHGDKAQNE 398
+ IIF TK+ CD + +LR G + + +HGD+ E
Sbjct: 487 AVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFLRQRGGKHYSCVCLHGDRKPQE 546
Query: 399 RDWVLAEFRSGRSPIMVATDVAARGI 424
R L F+ + ++ TDVAARG+
Sbjct: 547 RKENLEMFKRQQVKFLICTDVAARGL 572
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 100 bits (250), Expect = 3e-21
Identities = 95/354 (26%), Positives = 169/354 (46%), Gaps = 29/354 (8%)
Query: 99 NEMTISGHDVPKP---IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG--RDM 153
N++ + D P ++SF+E +L V GF +P+ IQ PM L+ +++
Sbjct: 74 NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNL 133
Query: 154 IGVAATGSGKTLSYCLPGIVHINAQPLLSPGDG-PIVLVLAPTRELAVQIQK---ECSKF 209
I + +G+GKT ++ L + + P D P L L+PT ELA+Q K + KF
Sbjct: 134 IAQSQSGTGKTAAFVLAMLSRVE------PSDRYPQCLCLSPTYELALQTGKVIEQMGKF 187
Query: 210 GASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGK-TNLKRVTYLVLDE 268
++ + + Q+I + +I+I TPG ++D K + K++ VLDE
Sbjct: 188 YPELKLAYAVRGNKLERGQKISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 242
Query: 269 ADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELS 327
AD M+ G + Q +I + + Q L++SAT+ V + A + DP +++ E
Sbjct: 243 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL-KREEE 301
Query: 328 ASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPA 387
TI Q + + +++ + +L A ++ +IF T++T + + L EG
Sbjct: 302 TLDTIKQYYVLCSSRDEKFQALCNLYGAITI--AQAMIFCHTRKTASWLAAELSKEGHQV 359
Query: 388 LAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGMLLKFNFFSIGLNFSL 441
+ G+ +R V+ FR G+ ++V T+V ARGI + S+ +NF L
Sbjct: 360 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV----EQVSVVINFDL 409
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 100 bits (248), Expect = 6e-21
Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 20/300 (6%)
Query: 132 GFAKPTGIQCQGWPMALSG--RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIV 189
GF +P+ IQ PM L+ +++I + +G+GKT ++ L + +NA L P
Sbjct: 2 GFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELF-----PQC 56
Query: 190 LVLAPTRELAVQ---IQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGR 246
L LAPT ELA+Q + ++ KF ++ +P+ I +I+I TPG
Sbjct: 57 LCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK-----QIIIGTPGT 111
Query: 247 LIDM-LEIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKE 304
++D ++ +L ++ VLDEAD M+D GF +I + + Q L++SAT+
Sbjct: 112 VLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDS 171
Query: 305 VKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKII 364
V A + DP +++ EL+ ++ I Q VL + K D+ + I
Sbjct: 172 VWHFAERIIPDPNVIKLRKEELTLNN-IRQYY-VLCEHRK-DKYQALCNIYGSITIGQAI 228
Query: 365 IFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
IF T+R +T + +G + G+ +R + FR G+ +++ T+V ARGI
Sbjct: 229 IFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARGI 288
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 100 bits (248), Expect = 6e-21
Identities = 88/358 (24%), Positives = 160/358 (44%), Gaps = 26/358 (7%)
Query: 83 DVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQ 142
DV + + + + R+ N + G +P I F ++ +L+ + + +P+ IQ Q
Sbjct: 96 DVEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSSMSPSLLNRLSENSIRQPSPIQMQ 155
Query: 143 GWPMALSGRDMIGVAATGSGKTLSYCLPGIVHI-----NAQPLLSPGDGPIVLVLAPTRE 197
P R+++ A TGSGKTL++ LP I I A S + +VL PTRE
Sbjct: 156 SIPFMTERRNVLASAPTGSGKTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRE 215
Query: 198 LAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTN 257
LA Q E K+ A++ I S + D+Q +IL++TP R++ + K +
Sbjct: 216 LAAQTYTEFLKYCANTSI------SAANFSGEETDIQH-ADILVSTPNRIV--FHLDKID 266
Query: 258 LKRVTYLVLDEADRML------DMGFEPQIRKIVDQIRPD-RQTLMWSATWPKEVKQLAS 310
+ +LV+DE+DR+ D F Q+ I + +SAT+ EV++
Sbjct: 267 TSSLRWLVVDESDRLFEVVEGQDKCFRNQLAAIYKACDAKCTRVAFFSATFSHEVEKWCK 326
Query: 311 DYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTK 370
+ + + V +G S + ++ T+ K+ + L T+ + ++F +K
Sbjct: 327 ENIDEIGMVCVGERNSSNTSVKQKLTYCGTEDGKKIAIRNLLRTSFK---PPALVFVQSK 383
Query: 371 RTCDEITSYLRT--EGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGM 426
++ L +I+ K+ ERD + FR G ++V T++ RG+ +
Sbjct: 384 DRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFRRGEIWVLVCTELLGRGLDL 441
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 98.2 bits (243), Expect = 2e-20
Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 27/353 (7%)
Query: 99 NEMTISGHDVPKP---IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG--RDM 153
N++ + D P ++SF+E +L V GF +P+ IQ P+ L+ +++
Sbjct: 75 NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNL 134
Query: 154 IGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQK---ECSKFG 210
I + +G+GKT ++ L + + P L L+PT ELA+Q K + KF
Sbjct: 135 IAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFY 189
Query: 211 ASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGK-TNLKRVTYLVLDEA 269
++ + + Q+I + +I+I TPG ++D K + K++ VLDEA
Sbjct: 190 PELKLAYAVRGNKLERGQKISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244
Query: 270 DRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSA 328
D M+ G + Q +I + + Q L++SAT+ V + A + DP +++ E
Sbjct: 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL-KREEET 303
Query: 329 SHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPAL 388
TI Q + + +++ + +L A ++ +IF T++T + + L EG
Sbjct: 304 LDTIKQYYVLCSSRDEKFQALCNLYGAITI--AQAMIFCHTRKTASWLAAELSKEGHQVA 361
Query: 389 AIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGMLLKFNFFSIGLNFSL 441
+ G+ +R V+ FR G+ ++V T+V ARGI + S+ +NF L
Sbjct: 362 LLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV----EQVSVVINFDL 410
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 95.5 bits (236), Expect = 1e-19
Identities = 67/198 (33%), Positives = 101/198 (50%), Gaps = 10/198 (5%)
Query: 98 ENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQE-GFAKPTGIQCQGWPMALSG---RDM 153
+ + I+ + P F G S ++ ++Q+ KPT IQ Q P + D
Sbjct: 128 DENVAINPSNAPLKGDQFASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDF 187
Query: 154 IGVAATGSGKTLSYCLPGIVHI-NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGAS 212
A TGSGKTLSY LP I I N + G LV+APTRELA QI CS +
Sbjct: 188 FIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLVSC 247
Query: 213 SRIRNTCVY-GGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVT----YLVLD 267
C+ GG K + L++G +I TPGR++D L+ K ++++ Y+VLD
Sbjct: 248 CHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLD 307
Query: 268 EADRMLDMGFEPQIRKIV 285
E D+++++GF+ I +I+
Sbjct: 308 EGDKLMELGFDETISEII 325
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 94.4 bits (233), Expect = 3e-19
Identities = 85/313 (27%), Positives = 135/313 (42%), Gaps = 60/313 (19%)
Query: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 173
SF G +L + EG PT IQ + P+ L R ++GV TGSGKTL Y +P I
Sbjct: 11 SFKTMGLDYRLLRNILYEG---PTPIQRKTIPLILERRSLMGVGRTGSGKTLCYLIPAI- 66
Query: 174 HINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDL 233
Q +S G LV+ PT+EL +Q ++ ++ L
Sbjct: 67 ----QRAIS---GEKTLVIVPTKELVIQARR------------------------VLKRL 95
Query: 234 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR- 292
RG+E +LI++ GK LV+DE DR+L+ EP ++ + D+I
Sbjct: 96 ARGIE----EAWKLIEICTPGKIEGMSADMLVVDEIDRILE---EPSLKSVFDRINESLS 148
Query: 293 -QTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKH 351
Q + +SAT P P+ +++ +E + T+ + K L +
Sbjct: 149 CQKVFFSATLPDH-----------PLNMKVVEIETRINETVKHFFFYIPSESKEAALLRI 197
Query: 352 LETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRS 411
L D+ K I+FA+TK + + L + + I+ R +F + +
Sbjct: 198 L-----DKTRKTIVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSKF 252
Query: 412 PIMVATDVAARGI 424
I+V TDVAARG+
Sbjct: 253 SILVVTDVAARGL 265
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 92.8 bits (229), Expect = 9e-19
Identities = 75/261 (28%), Positives = 128/261 (48%), Gaps = 26/261 (9%)
Query: 190 LVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLID 249
LVL PTRELAVQ+++ + I+ + GG+ +Q R L R EI++ATPGRL +
Sbjct: 391 LVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWE 450
Query: 250 MLE---IGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQTLMWSAT- 300
+++ NL+++ LV+DEADRM++ G ++ ++++ Q P RQTL++SAT
Sbjct: 451 LIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATL 510
Query: 301 -----------WPKEVKQLASDYLHDPIQVQIGSLELSASHTITQ---IVEVLTDFE--- 343
K K++ D + +IG +T+ VE LT+ +
Sbjct: 511 TLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIHC 570
Query: 344 KRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVL 403
+ D +L + ++FA++ ++ L+ L +H Q +R L
Sbjct: 571 ETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNL 630
Query: 404 AEFRSGRSPIMVATDVAARGI 424
+F +++ATDVAARG+
Sbjct: 631 EQFARLEDCVLLATDVAARGL 651
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 92.0 bits (227), Expect = 2e-18
Identities = 65/253 (25%), Positives = 127/253 (49%), Gaps = 23/253 (9%)
Query: 89 ESEVIEFRKENEMTISGHDVPKPIR--------SFDEAGFPSYVLDE-----VKQEGFAK 135
E++++++ +E E P P + S +GF ++L + GF
Sbjct: 7 ENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEH 66
Query: 136 PTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI-VLVLAP 194
P+ +Q + P A+ G D++ A +G GKT + L + I P +G + VLV+
Sbjct: 67 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE------PVNGQVTVLVMCH 120
Query: 195 TRELAVQIQKECSKFGA-SSRIRNTCVYGGVPKSQQIRDLQRGV-EILIATPGRLIDMLE 252
TRELA QI KE +F ++ + +GG+ + L++ +++ TPGR++ ++
Sbjct: 121 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 180
Query: 253 IGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASD 311
+LK V + VLDE D+ML+ + +++I ++Q +M+SAT K+++ +
Sbjct: 181 NRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRK 240
Query: 312 YLHDPIQVQIGSL 324
++ D + ++ +L
Sbjct: 241 FMQDVSRARVAAL 253
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 89.7 bits (221), Expect = 8e-18
Identities = 77/289 (26%), Positives = 131/289 (44%), Gaps = 22/289 (7%)
Query: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171
+ SFD+ +L + G KP+ IQ + + G +I A +G+GK ++ +
Sbjct: 76 VDSFDDMNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGKMATFSI-S 134
Query: 172 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIR-NTCVYGGVPKSQQI 230
I+H I L + T+ L IQK G +TC+ GG ++
Sbjct: 135 ILH------------QIELDVKATQAL---IQKVVIALGDHMDASCHTCI-GGTNVHAEV 178
Query: 231 RDLQ-RGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
+ LQ I++ TPG + DML + K + VLD+ D ML GF+ QI I ++
Sbjct: 179 QKLQMEAPHIIVGTPGHVFDMLNWRYLSPKYIKMFVLDKTDEMLSHGFKDQIYGIFQELN 238
Query: 290 PDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLA 349
+ Q ++ SAT P +V ++ ++ + I + + EL+ + + + K D L
Sbjct: 239 SNTQVVLPSATMPSDVLEVTKKFMREHIWILVKKEELTLEGICQFYINMEREEWKLDTLG 298
Query: 350 KHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNE 398
ET + Q +IF +T+R D +T + + + A+HGD Q E
Sbjct: 299 DLYETLTIAQ---AVIFLNTRRKADWLTKKMHAQDFTVSAMHGDMDQKE 344
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 89.4 bits (220), Expect = 1e-17
Identities = 85/313 (27%), Positives = 137/313 (43%), Gaps = 24/313 (7%)
Query: 132 GFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLP---GIVHINAQPLLSPGDGPI 188
GF T +Q PM +D++ + TGSGKT ++ +P +V A
Sbjct: 26 GFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFH 85
Query: 189 VLVLAPTRELAVQIQKECSKF---GASSRIRNTCVYGGVPKSQQIRD-----LQRGVEIL 240
L++APTREL+ QI+ F S C +RD L+ +IL
Sbjct: 86 SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQIL 145
Query: 241 IATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 300
I TPGR++D L++ + +V+DEADR+LDM F KI+ + R+T ++SAT
Sbjct: 146 IGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSAT 205
Query: 301 WPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQD 360
+ L +P+++ + S + A ++ V+ EK L L + +
Sbjct: 206 MRSAGSDIFKTGLRNPVRITVNS-KNQAPSSLKLNYCVVNPAEKLQLLVSIL---NNYKF 261
Query: 361 SKIIIFASTKRTCDEITSYLRTEG--------WPALAIHGDKAQNERDWVLAEFRSGRS- 411
K I++ T + S+++ G ++HG + R L F S
Sbjct: 262 KKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSLSN 321
Query: 412 PIMVATDVAARGI 424
++ TDVAARGI
Sbjct: 322 SVLFTTDVAARGI 334
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 86.7 bits (213), Expect = 6e-17
Identities = 77/308 (25%), Positives = 126/308 (40%), Gaps = 70/308 (22%)
Query: 177 AQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGA---SSRIRNTCVYGGVPKSQQIRDL 233
A+ L P+ ++L PTREL Q + F + S +IR + G +Q +R L
Sbjct: 296 AEQLSIDSSTPLCVILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAGENMNQILRTL 355
Query: 234 QRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML--DMGFEPQIRKI------V 285
+ G +I++ TP R+ D++ GK K + ++V+DE D+ L QI I V
Sbjct: 356 ETGCDIVVGTPSRVFDLIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLV 415
Query: 286 DQIRPDRQTLMWSAT--------------------------------------------- 300
Q RQ + SAT
Sbjct: 416 AQDGTRRQVIACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDK 475
Query: 301 -WPKEVKQ---LASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETAS 356
W +++ Q L D++HD Q++ G+ + T+I+ K + + +
Sbjct: 476 QWIRQMHQQVHLEDDHVHDGDQIRPGTTDKDTISLGTKIL-------KGIYVVRAIHALQ 528
Query: 357 QDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVA 416
D K I+F TK+ CD + +L+ A +HGD++ ER L F+ G +V
Sbjct: 529 MD---KAIVFCRTKQQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVC 585
Query: 417 TDVAARGI 424
+DV ARG+
Sbjct: 586 SDVVARGL 593
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 84.3 bits (207), Expect = 3e-16
Identities = 95/357 (26%), Positives = 158/357 (43%), Gaps = 26/357 (7%)
Query: 83 DVAQMSE--SEVIEFRKENEMTISGHDVPKP---IRSFDEAGFPSYVLDEVKQEGFAKPT 137
D+A +++ + ++ K+ + + D P I SF E VL + F PT
Sbjct: 174 DIALLNKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPT 233
Query: 138 GIQCQGWPMALSG--RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPT 195
IQ P+ L ++I A +G+GKT ++ L + I+ + P + LAPT
Sbjct: 234 RIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMC-----PQCICLAPT 288
Query: 196 RELAVQIQKECSKFGA--SSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEI 253
ELA QI + K G + + + GG + + R L +I+I TPG D L+
Sbjct: 289 LELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTE--QIVIGTPGITRDYLQK 346
Query: 254 GKT-NLKRVTYLVLDEADRML-DMGF---EPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308
K + ++ LVLDEAD M+ GF I +V+ Q++++SAT+ + V
Sbjct: 347 YKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINF 406
Query: 309 ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRD-RLAKHLETASQDQDSKIIIFA 367
A+ + + I V + E + I + RD + A + S + +IF
Sbjct: 407 ATKIIKNAIVVMLKREE----QALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFC 462
Query: 368 STKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
TK + + +R G +HGD ER + F+ G +++ T+V ARGI
Sbjct: 463 HTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGI 519
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 84.3 bits (207), Expect = 3e-16
Identities = 95/357 (26%), Positives = 158/357 (43%), Gaps = 26/357 (7%)
Query: 83 DVAQMSE--SEVIEFRKENEMTISGHDVPKP---IRSFDEAGFPSYVLDEVKQEGFAKPT 137
D+A +++ + ++ K+ + + D P I SF E VL + F PT
Sbjct: 199 DIALLNKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPT 258
Query: 138 GIQCQGWPMALSG--RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPT 195
IQ P+ L ++I A +G+GKT ++ L + I+ + P + LAPT
Sbjct: 259 RIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMC-----PQCICLAPT 313
Query: 196 RELAVQIQKECSKFGA--SSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEI 253
ELA QI + K G + + + GG + + R L +I+I TPG D L+
Sbjct: 314 LELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTE--QIVIGTPGITRDYLQK 371
Query: 254 GKT-NLKRVTYLVLDEADRML-DMGF---EPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308
K + ++ LVLDEAD M+ GF I +V+ Q++++SAT+ + V
Sbjct: 372 YKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINF 431
Query: 309 ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRD-RLAKHLETASQDQDSKIIIFA 367
A+ + + I V + E + I + RD + A + S + +IF
Sbjct: 432 ATKIIKNAIVVMLKREE----QALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFC 487
Query: 368 STKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
TK + + +R G +HGD ER + F+ G +++ T+V ARGI
Sbjct: 488 HTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGI 544
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 84.3 bits (207), Expect = 3e-16
Identities = 95/357 (26%), Positives = 158/357 (43%), Gaps = 26/357 (7%)
Query: 83 DVAQMSE--SEVIEFRKENEMTISGHDVPKP---IRSFDEAGFPSYVLDEVKQEGFAKPT 137
D+A +++ + ++ K+ + + D P I SF E VL + F PT
Sbjct: 583 DIALLNKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPT 642
Query: 138 GIQCQGWPMALSG--RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPT 195
IQ P+ L ++I A +G+GKT ++ L + I+ + P + LAPT
Sbjct: 643 RIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMC-----PQCICLAPT 697
Query: 196 RELAVQIQKECSKFGA--SSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEI 253
ELA QI + K G + + + GG + + R L +I+I TPG D L+
Sbjct: 698 LELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTE--QIVIGTPGITRDYLQK 755
Query: 254 GKT-NLKRVTYLVLDEADRML-DMGF---EPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308
K + ++ LVLDEAD M+ GF I +V+ Q++++SAT+ + V
Sbjct: 756 YKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINF 815
Query: 309 ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRD-RLAKHLETASQDQDSKIIIFA 367
A+ + + I V + E + I + RD + A + S + +IF
Sbjct: 816 ATKIIKNAIVVMLKREE----QALPNIKQFYVQCACRDSKYAAIVNLYSGLAVASSVIFC 871
Query: 368 STKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
TK + + +R G +HGD ER + F+ G +++ T+V ARGI
Sbjct: 872 HTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFARGI 928
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 80.1 bits (196), Expect = 6e-15
Identities = 86/389 (22%), Positives = 165/389 (42%), Gaps = 82/389 (21%)
Query: 109 PKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALS----------GRDMIGVAA 158
P F S +++ ++++ + +Q P+ L G D+ AA
Sbjct: 122 PNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAA 181
Query: 159 TGSGKTLSYCLPGIVHINAQ--PLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIR 216
TGSGKTLSY +P + ++ + P L +V+ PTREL VQ+ K + + + ++
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQVAKTFEYYMSGAGLQ 235
Query: 217 NTCVYGGVPKSQQIRDLQRG-------VEILIATPGRLIDMLEIGKT-NLKRVTYLVLDE 268
C + G KS + Q +++L++TPGRL+D + ++ +L+ + Y+V+DE
Sbjct: 236 -VCAWTG-QKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDE 293
Query: 269 ADRMLDMGFE------------------------------PQIRKIVDQIRPDR-----Q 293
ADR+LD F+ P +D + P R Q
Sbjct: 294 ADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQ 353
Query: 294 TLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLE 353
L++SAT ++ ++AS LH+P V + + ++ +I + F L ++
Sbjct: 354 KLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDG-GEIEDDAIVFSVPPTLQEYHV 412
Query: 354 TASQDQD------------SKIIIFASTKRTCDEITSYLR------TEGWPALAIHGDKA 395
+ S ++ + I+ F + + L + + +
Sbjct: 413 SVSSEKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLS 472
Query: 396 QNERDWVLAEFRSGRSPIMVATDVAARGI 424
++ER +++ F +G ++V +D+ ARGI
Sbjct: 473 RDERKKIISRFATGDLNLLVCSDLMARGI 501
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 77.0 bits (188), Expect = 5e-14
Identities = 70/279 (25%), Positives = 123/279 (43%), Gaps = 22/279 (7%)
Query: 157 AATGSGKTLSYCLPGIVHINAQPLLSPGDGPIV--------LVLAPTRELAVQIQKECSK 208
A TGSGKT++Y +P I ++ Q L +P + ++L PT EL Q+ + SK
Sbjct: 164 AETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIRSIILVPTHELVDQVYETVSK 223
Query: 209 FGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTN-----LKRVTY 263
+ + + +++ ++IL+ TPG+L+++ I L +V +
Sbjct: 224 TKTLLGLNSFKWDKATSYRDLLENIKNRIDILVTTPGKLLNLFSIRMITRPDKVLSKVGF 283
Query: 264 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGS 323
+VLDEAD +LD + + + +I + SAT P+E + + +
Sbjct: 284 VVLDEADTLLDRSWLEETHSAIKRIPNINHLIFCSATIPQEFNKTMQRLFPTVVPIMTPR 343
Query: 324 L-ELSASHTITQIVEVLTDFE--KRDRLAKHLETASQDQ-----DSKIIIFASTKRTCDE 375
L +L + I L+ F+ K LA+ L S D + + IIF + K+ E
Sbjct: 344 LHKLPFALDFKVINSALSPFKGSKIKALAQTLYAISNDDTEPGFEKRCIIFVNEKKNVPE 403
Query: 376 ITSYLRTE-GWPALAIHGDKAQNERDWVLAEFRSGRSPI 413
I + L + G A+ + G+ ER + F S P+
Sbjct: 404 IVNLLNKKFGHNAIGLTGEDTFEERSEKIMPFLSPPRPL 442
>At2g28600 [A] KOG0339 ATP-dependent RNA helicase
Length = 502
Score = 75.5 bits (184), Expect = 1e-13
Identities = 56/233 (24%), Positives = 107/233 (45%), Gaps = 16/233 (6%)
Query: 184 GDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQR-GVEILIA 242
G+ P +L L P++ A Q++ C I ++ G P QI L+ E ++A
Sbjct: 194 GNSPFLLYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVA 252
Query: 243 TPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 302
TP RL++++ + ++ V+ LV+DE + G+ ++ I I QT++++ ++
Sbjct: 253 TPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFS 312
Query: 303 KEVKQLASDYLHDPI-QVQIGSLELSASHTITQIVEVLTDFEKR-DRLAKHLETASQDQD 360
+ +L + +V + S ITQ V V EK+ + AKHL+++S
Sbjct: 313 ASIIPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCASEEKKLQKFAKHLDSSS---- 368
Query: 361 SKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPI 413
SK+I + + + +I + L+ + G D L+E + R P+
Sbjct: 369 SKLIYIVTKEESFKKIMAILK--------LKGISVSTSSDSKLSEVKKSRKPV 413
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 72.4 bits (176), Expect = 1e-12
Identities = 76/316 (24%), Positives = 140/316 (44%), Gaps = 55/316 (17%)
Query: 152 DMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFG- 210
D++ AATGSGKTL+Y +P + + + + + +++ PT+ L Q+ +K
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQI----NRLRCIIIVPTKLLINQVYTTLTKLTQ 284
Query: 211 ASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEAD 270
+S I + K + + +ILI TPGRL+D L + NLK + +L++DEAD
Sbjct: 285 GTSLIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLIIDEAD 344
Query: 271 RMLDMGFEPQIRKIVDQIRPDRQ--------TLMWSATWPKEVKQLASDYLHDPIQVQIG 322
R+L+ F+ K++ ++ D+ +++SAT ++L L+ P
Sbjct: 345 RLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKP------ 398
Query: 323 SLELSASHTITQIVEVLTDFEKRDRLAKHLE------------TASQDQDSKIIIFASTK 370
L L + + Q+ L +F AK + A +KI+IF +
Sbjct: 399 KLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSN 458
Query: 371 RTCDEITSYLR-----------TEGWPALAI-------HGDKAQNERDWVLAEF----RS 408
+ ++ L+ + LA+ + KA+N++ ++A F S
Sbjct: 459 ESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKK--IVANFSHHSES 516
Query: 409 GRSPIMVATDVAARGI 424
I++ TD+ +RGI
Sbjct: 517 AGITILITTDIMSRGI 532
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 69.7 bits (169), Expect = 8e-12
Identities = 87/343 (25%), Positives = 139/343 (40%), Gaps = 82/343 (23%)
Query: 151 RDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQ------K 204
RD+ + TGSGKTLSY LP + + ++P+ LV+ PTR+LA+Q++
Sbjct: 25 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLR----ALVVLPTRDLALQVKDVFDAIA 80
Query: 205 ECSKFGASSRIRNTCVYGGV------PK---------SQQIRDLQRGVEILIATPGRLID 249
S + + + G + PK ++L+ V+IL+ATPGRL+D
Sbjct: 81 PAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMD 140
Query: 250 MLEIGK-TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT-------- 300
+ K L+ + YLV+DE DR+L ++ + ++ + +L S T
Sbjct: 141 HINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFG 200
Query: 301 ------------------WPKEVKQLASDYL-HDPIQVQIGSLELSASHTITQIVEVLTD 341
+P+ VK + S L DP ++ ++L H + +T
Sbjct: 201 SLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKL----IQLDLHHPL-----FMTT 251
Query: 342 FEKRDRLAKHLE-----------------TASQDQDSKIIIFASTKRTCDEITSYLRTEG 384
R RL + LE + K IIF S+ T + L G
Sbjct: 252 GGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFG 311
Query: 385 WP---ALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
P A G Q+ R L FR G ++VA+D RG+
Sbjct: 312 DPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGM 354
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 69.3 bits (168), Expect = 1e-11
Identities = 45/127 (35%), Positives = 78/127 (60%), Gaps = 5/127 (3%)
Query: 222 GGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNL-KRVTYLVLDEADRMLDMGFEPQ 280
GG +S + L G+ I++AT GRL+D ++ + K + LV+DEADR+LD+GFE +
Sbjct: 2 GGSNRSAEAWKLANGINIIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 61
Query: 281 IRKIVDQIRPDRQTLMWSATWPKEVKQLASDYL-HDPIQVQIGSLELSASHTITQIVEVL 339
+++I+ + RQT+++SAT ++V+ LA L +P+ V G + +A+ T+ + +L
Sbjct: 62 LKQIIKLLLTHRQTMLFSATQTQKVEDLARISLKKEPLYV--GDDDDNANETVADLGTLL 119
Query: 340 -TDFEKR 345
TD R
Sbjct: 120 CTDVAAR 126
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 67.4 bits (163), Expect = 4e-11
Identities = 69/253 (27%), Positives = 109/253 (42%), Gaps = 43/253 (16%)
Query: 85 AQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGW 144
A +E+EV +K N+ + H V S+ G V ++ GF +P+ Q
Sbjct: 59 ASATEAEVE--KKGNDTFFADHTV-----SWKSLGLSDNVSIALRDSGFDRPSLTQAVCI 111
Query: 145 PMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDG---------PIVLVLAPT 195
P LSG+D+I A TGSGKT Y P I + L S I L+L P
Sbjct: 112 PSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPN 171
Query: 196 RELAVQIQKECSKF-----GASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDM 250
L Q+ + + R+ C G P R +I+++TP L++
Sbjct: 172 VMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWP--------DRLPDIIVSTPAALLNN 223
Query: 251 LEIGKTN----LKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVK 306
+E + L+ V Y+V DEAD +L F+ QI ++++ +R D K+V
Sbjct: 224 IEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDE----------KQVS 273
Query: 307 QLASDYLHDPIQV 319
+LA L P+++
Sbjct: 274 RLAKSNLGRPMEI 286
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 66.6 bits (161), Expect = 7e-11
Identities = 41/123 (33%), Positives = 64/123 (51%), Gaps = 13/123 (10%)
Query: 93 IEFRKENEMTI--SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSG 150
I F K E+ + +G DVP+PI F + ++ + +K G+ +PT +Q P G
Sbjct: 341 INFDKYEEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGG 400
Query: 151 RDMIGVAATGSGKTLSYCLP--------GIVHINAQPLLSPG---DGPIVLVLAPTRELA 199
RD++ A TGSGKT ++ +P G ++ S G P LVL+PTREL+
Sbjct: 401 RDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELS 460
Query: 200 VQI 202
+Q+
Sbjct: 461 LQV 463
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 64.3 bits (155), Expect = 3e-10
Identities = 84/306 (27%), Positives = 125/306 (40%), Gaps = 38/306 (12%)
Query: 160 GSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIR--- 216
GSGKTL+Y L IN Q +++ PTREL +Q+ K A S I
Sbjct: 81 GSGKTLTYLLLIFSLINPQR-----SSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKG 135
Query: 217 ---NTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML 273
+ GG + + IL+AT L MLE + V LV+DE D +
Sbjct: 136 CTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLF 195
Query: 274 DMGFEP-QIRKIVDQIRP--DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASH 330
+ +RK++ RQT+ SA+ P+ ++HD IQ + ++ H
Sbjct: 196 YSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQH-----KHFVHDCIQQKWTKRDVVHVH 250
Query: 331 T---ITQIVEVLTDFEKRDRLAKH---LETASQDQDSKIIIFA------STKRTCDEITS 378
+ + +L F ++ KH L D IIF S K D T+
Sbjct: 251 VSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTT 310
Query: 379 ----YLRTE---GWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIGMLLKFN 431
+L+T L + GD N R L E R G ++V+TD+AARGI + +
Sbjct: 311 LLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTH 370
Query: 432 FFSIGL 437
F+ L
Sbjct: 371 IFNFDL 376
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 63.9 bits (154), Expect = 5e-10
Identities = 36/118 (30%), Positives = 61/118 (51%)
Query: 239 ILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 298
I++ TPGR+ DML + K + VLDEAD ML F+ QI I + + Q ++ S
Sbjct: 62 IIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLSHRFKDQICDIFQMLNSNTQVVLLS 121
Query: 299 ATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETAS 356
AT P +V ++ ++ DPI++ + EL+ + D ++RD + + + S
Sbjct: 122 ATIPSDVLEVTKKFMRDPIRILVKKEELTLKDFTVSAMHGDMDQKERDVVMREYRSGS 179
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 63.5 bits (153), Expect = 6e-10
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 136 PTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPI-VLVLAP 194
P ++ P RD+ A TGSGKTL++ +P IV + +Q + D + LV+ P
Sbjct: 169 PWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIP-IVQLLSQRV----DCKVRALVVLP 223
Query: 195 TRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGV------------EILIA 242
ELA+Q+ + S+ + + + C+ + K ++ D Q + +I++
Sbjct: 224 VAELALQVYRVISELCSKTELE-VCL---LSKQHKLEDEQEKLVEQYKGKYYSKADIVVT 279
Query: 243 TPGRLIDMLEIGKTN-LKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 301
TPGRL+D L K LK + +LV+DEADR++D F+ + + ++ L+
Sbjct: 280 TPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAGTQA 339
Query: 302 PKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTD 341
P +L + + P +L S T++Q E L D
Sbjct: 340 PLCYAELQASFGKQP-------HKLLFSATLSQDPEKLQD 372
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 58.9 bits (141), Expect = 1e-08
Identities = 79/321 (24%), Positives = 140/321 (43%), Gaps = 51/321 (15%)
Query: 145 PMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQP--LLSPGDGPIVLVLAPTRELAVQI 202
P L RD+ A TGSGKT+ Y LP + + ++P +L ++L P + L QI
Sbjct: 254 PPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQ------AVILVPVQTLVAQI 307
Query: 203 QKECSKFGASSRIRNTCVYGGVPK-SQQIRDLQRG-VEILIATPGRLIDMLEI---GKTN 257
E ++ S + G ++ R L +++ATP RL+ L +
Sbjct: 308 VDEFKRWNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPID 367
Query: 258 LKRVTYLVLDEADRM--------LDM-----GFEPQIRKIVDQIRPDR--QTLMWSATWP 302
L ++ +L++DEADRM LD+ G ++ + D IR R Q ++ SAT
Sbjct: 368 LSKLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLS 427
Query: 303 KEVKQL-----------------ASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKR 345
K+V++L D QV S L+ +I+ + V+TD K
Sbjct: 428 KDVEELHLWNLFKPRLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRL-VVTD-PKF 485
Query: 346 DRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQ---NERDWV 402
LA + + ++++ ++ +IF + + + + L+ + AQ R +
Sbjct: 486 HPLAVY-QQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKRRYKM 544
Query: 403 LAEFRSGRSPIMVATDVAARG 423
L +F + +++ +DV ARG
Sbjct: 545 LEKFNKNENRVLICSDVLARG 565
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 57.0 bits (136), Expect = 6e-08
Identities = 41/193 (21%), Positives = 92/193 (47%), Gaps = 16/193 (8%)
Query: 124 VLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSP 183
+L + + G+ KP+ Q + P+ALSGRD++ A G+GK+ ++ +P + ++ +
Sbjct: 60 LLMRIFEMGWKKPSPFQEESIPIALSGRDILARAKNGTGKSSAHDIPLLKRLDLKK---- 115
Query: 184 GDGPIVLVLAPTRELAVQIQKECSKFGA-SSRIRNTCVYGGVPKSQQIRDLQRGVEILIA 242
D +V+ PT A+Q+ + C + ++ GG + L V ++IA
Sbjct: 116 -DTIQTIVIVPTGGPALQVSQICIQVSKHMGGVKVVMTTGGTNSGDDVLRLDDTVHMVIA 174
Query: 243 TPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT-- 300
PGR++++++ G Y + E ++ + + +++ ++ + ++ +
Sbjct: 175 APGRILNLIKKGVAKDITQYYAYVTEHQKV------HGLTTLFSRLQLNQMIIFFNCSQR 228
Query: 301 --WPKEVKQLASD 311
WP ++ QL D
Sbjct: 229 VEWPAKISQLGID 241
>CE15167 [A] KOG0335 ATP-dependent RNA helicase
Length = 340
Score = 55.8 bits (133), Expect = 1e-07
Identities = 67/287 (23%), Positives = 120/287 (41%), Gaps = 41/287 (14%)
Query: 150 GRDMIGVAATGSGKTLSYCLPGIV----HINAQPLLSPGDGPIVLVLAPTRELAVQIQKE 205
GR ++ A TG GKT ++ +P I + + S P +L++A T L Q+
Sbjct: 30 GRGLVVEAPTGIGKTYAFLIPAIEAALENRQSNCFESTKPSPSILIMASTSALVDQLFNR 89
Query: 206 CSKFGASSRIRNTCVYGGVPKSQQIRD---LQRGVEILIATPGRLIDMLEIGKTNLKRVT 262
C + N + + + + + +I T G+L +E G L +
Sbjct: 90 CELILGLQCMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCTIGKLKATIECGDVCLDNLK 149
Query: 263 YLVLDEADRMLD-MGFEPQIRKIVDQIRPDR----QTLMWSATWPKEVKQLASDYLHDPI 317
++LDEAD+M+D F P I I+DQ++ + Q+ +SAT+ K
Sbjct: 150 TIILDEADKMIDNCAFVPDINWILDQLKEENLENLQSCFFSATYNKNAN----------- 198
Query: 318 QVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEIT 377
G++ L T+ Q+ + D +D + ET I IF T + ++T
Sbjct: 199 ----GTIAL----TVLQMRMLGEDDPCKD--GPYNET--------IAIFCETVQRVTQVT 240
Query: 378 SYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
LR G+ + +N++ + + + +V T++ ARGI
Sbjct: 241 MTLRQLGYNFKPVCSMITKNQQLVTVNDLEFRKIHGVVCTNILARGI 287
>Hs17447249 [A] KOG0336 ATP-dependent RNA helicase
Length = 139
Score = 55.1 bits (131), Expect = 2e-07
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 108 VPKPIRSFDEA-GFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATG 160
+P P +FD+A S V++ +K+ GF KPT I+ Q WP+AL G+D+ GVA TG
Sbjct: 13 IPNPSCTFDDAFQCCSEVMENIKKTGFQKPTPIRSQAWPIALQGKDLTGVAQTG 66
>Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 197
Score = 54.3 bits (129), Expect = 4e-07
Identities = 37/104 (35%), Positives = 65/104 (61%), Gaps = 5/104 (4%)
Query: 245 GRLIDMLEIGKTNL-KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 303
GRL+D ++ + K + LV+DEADR+LD+GFE ++++I+ + RQT+++SAT +
Sbjct: 32 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLLTHRQTMLFSATQTQ 91
Query: 304 EVKQLASDYL-HDPIQVQIGSLELSASHTITQIVEVL-TDFEKR 345
+V+ LA L +P+ V G + +A+ T+ + +L TD R
Sbjct: 92 KVEDLARISLKKEPLYV--GDDDDNANETVADLGTLLCTDVAAR 133
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 53.9 bits (128), Expect = 5e-07
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 33/244 (13%)
Query: 85 AQMSESEVIEFRKENE--MTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKP------ 136
A+ S + +F KEN T G D+P D+ G + V + + +
Sbjct: 60 AKAESSMIDKFCKENTRIQTNPGIDLP------DDYGTDAIVANAIGDQRIVNNLKCVHV 113
Query: 137 ---TGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV------HINAQPLLSPGDGP 187
+Q + GR ++ A TG GKT ++ +P I N P P
Sbjct: 114 TTFNAVQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSNCFEYTKPS--P 171
Query: 188 IVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRD---LQRGVEILIATP 244
+L++A T L Q+ C + N + + + + + +I T
Sbjct: 172 SILIMASTSALVDQLFNRCELILGLQCMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCTI 231
Query: 245 GRLIDMLEIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDR----QTLMWSA 299
G+L +E G L + ++LDEAD+M+D F P I I+DQ++ + Q+ +SA
Sbjct: 232 GKLKATIECGDVCLDNLKTIILDEADKMIDNCAFGPDINWILDQLKEENLENLQSCFFSA 291
Query: 300 TWPK 303
T+ K
Sbjct: 292 TYNK 295
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 53.1 bits (126), Expect = 8e-07
Identities = 31/74 (41%), Positives = 44/74 (58%), Gaps = 1/74 (1%)
Query: 237 VEILIATPGRLID-MLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL 295
+ IL+ PGRL+ M E + + LVLDEA R+LD+GF + I++ + RQTL
Sbjct: 132 INILVCAPGRLLQHMDETVSFHATALLMLVLDEAYRILDVGFADTMNAIIENLPKKRQTL 191
Query: 296 MWSATWPKEVKQLA 309
++SAT VK LA
Sbjct: 192 LFSATQTISVKDLA 205
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 51.2 bits (121), Expect = 3e-06
Identities = 77/320 (24%), Positives = 135/320 (42%), Gaps = 51/320 (15%)
Query: 145 PMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPL----LSPGDGPIVLVLAPTRELAV 200
P L ++I A TGSGKTLSYCLP + + L L PG + V RE+
Sbjct: 57 PYFLKKTNVIVQAFTGSGKTLSYCLPLVEMARGRSLFGAILVPGKPLVRQVYRVVREIKH 116
Query: 201 QIQKECSKFG-------ASSRIRNTCVYGGVPKSQQIR---DLQRGVEILIATPGRLIDM 250
+ K +G + V + + R L+ +LI TP ++ +
Sbjct: 117 EGLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAESLRASARVLIGTPRSVLGL 176
Query: 251 LEIGKTNLKRVTYLVLDEADRMLD---MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQ 307
+ + + ++ VT+LV+DEAD +++ +G I +++ D +SAT
Sbjct: 177 MSM--SEIRNVTHLVIDEADLLINPETVGVFASILSVIEM--EDIHISCFSAT------- 225
Query: 308 LASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFE---KRDRLAKH---LETASQDQDS 361
++Y+ + I+ + + I + + L D E R KH L+ + +S
Sbjct: 226 -MNEYVSEVIET------VKSITKIRVVSKRLIDHEFVFGTSRKIKHLSLLQIIADGIES 278
Query: 362 KIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAA 421
+IF ++T + ++ L G A+ + E VL FR + + TD +
Sbjct: 279 PTLIFVKDEKTGEALSMLL---GKSAVYREDQEGSGE---VLDGFRLKKIWYLFTTDSLS 332
Query: 422 RGIGMLLKFNFFSIGLNFSL 441
RGI +N S+ +N+ L
Sbjct: 333 RGIDF---YNIRSV-INYDL 348
>CE00941 [L] KOG0352 ATP-dependent DNA helicase
Length = 809
Score = 51.2 bits (121), Expect = 3e-06
Identities = 70/296 (23%), Positives = 122/296 (40%), Gaps = 50/296 (16%)
Query: 159 TGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKE---CSKFGAS-SR 214
TG+GK+L Y LP +VH ++SP ++A ++ ++++ C ++ +
Sbjct: 203 TGAGKSLCYQLPAVVHGGITVVISP-------LIALMKDQISSLKRKGIPCETLNSTLTT 255
Query: 215 IRNTCVYGGVPKSQQ-IRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML 273
+ + + G + K + IR L E +AT G L G N + Y+V+DEA +
Sbjct: 256 VERSRIMGELAKEKPTIRMLYLTAEG-VATDGT--KKLLNGLANRDVLRYIVVDEAHCVT 312
Query: 274 DMGFEPQIRKIVDQIRPDRQTL----------MWSATWPKEVKQLASDY-----LHDPIQ 318
G + RPD TL W A + D L +P
Sbjct: 313 QWGHD---------FRPDYLTLGSLRDVCPGVPWVALTATANAKAQDDIAFQLKLRNPES 363
Query: 319 VQIGSLELSA---SHTITQIVEVLTDFEKRD--RLAKHLETASQDQDSKI-----IIFAS 368
+ G+ + +H + I + LT K L KH E A + Q+ K I++
Sbjct: 364 FKSGTYRDNLFYDNHMASFITKCLTVDAKTSSSNLTKH-EKAERSQNKKTFTGSAIVYCR 422
Query: 369 TKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGI 424
++ C ++ L G PA+A H + +R+ V ++ + P++ AT GI
Sbjct: 423 SRNECGQVAKMLEIAGIPAMAYHAGLGKKDRNEVQEKWMNNEIPVVAATVAFGMGI 478
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,622,612
Number of Sequences: 60738
Number of extensions: 1066524
Number of successful extensions: 3668
Number of sequences better than 1.0e-05: 241
Number of HSP's better than 0.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2755
Number of HSP's gapped (non-prelim): 286
length of query: 442
length of database: 30,389,216
effective HSP length: 109
effective length of query: 333
effective length of database: 23,768,774
effective search space: 7915001742
effective search space used: 7915001742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)