ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6374 good K KOG3438 Transcription DNA-directed RNA polymerase, subunit L
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6374 2218938 2218558 -127
(127 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL113w [K] KOG3438 DNA-directed RNA polymerase subunit L 164 2e-41
SPAC1687.01 [K] KOG3438 DNA-directed RNA polymerase subunit L 117 3e-27
Hs7705740 [K] KOG3438 DNA-directed RNA polymerase subunit L 103 3e-23
7298551 [K] KOG3438 DNA-directed RNA polymerase subunit L 77 4e-15
7298381 [K] KOG4392 RNA polymerase subunit L 74 4e-14
CE18986 [K] KOG4392 RNA polymerase subunit L 69 1e-12
Hs5453932 [K] KOG4392 RNA polymerase subunit L 68 2e-12
Hs21704274 [K] KOG4392 RNA polymerase subunit L 67 4e-12
CE00225 [K] KOG3438 DNA-directed RNA polymerase subunit L 67 5e-12
Hs21704272 [K] KOG4392 RNA polymerase subunit L 66 7e-12
HsM14702177 [K] KOG4392 RNA polymerase subunit L 65 1e-11
At2g29540 [K] KOG3438 DNA-directed RNA polymerase subunit L 59 8e-10
At3g52090 [K] KOG4392 RNA polymerase subunit L 57 3e-09
>YNL113w [K] KOG3438 DNA-directed RNA polymerase subunit L
Length = 142
Score = 164 bits (414), Expect = 2e-41
Identities = 82/125 (65%), Positives = 96/125 (76%), Gaps = 6/125 (4%)
Query: 3 EVEKQDVDMLAAXXXXXXXXXXXXXXXXKIKLLTEATSEDGTSASFRITDEDHTLGNTLR 62
E E+QDVDM KIKLLT+ATSEDGTSASF+I +EDHTLGN LR
Sbjct: 24 EEEEQDVDMTG------DEEQEEEPDREKIKLLTQATSEDGTSASFQIVEEDHTLGNALR 77
Query: 63 YMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHKGLGDLMDMCDAVEDRFTQ 122
Y+IMKNP+VEFCGYSIPHPSEN L+IRIQTYG+ TAV+AL KGL DLMD+CD VE +FT+
Sbjct: 78 YVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTE 137
Query: 123 RIREM 127
+I+ M
Sbjct: 138 KIKSM 142
>SPAC1687.01 [K] KOG3438 DNA-directed RNA polymerase subunit L
Length = 95
Score = 117 bits (293), Expect = 3e-27
Identities = 54/83 (65%), Positives = 68/83 (81%)
Query: 42 DGTSASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEA 101
D TS +F+I EDHTLGN+LRY+IMKNPEVEFCGYSIPHPSE ++ RIQT TAV+
Sbjct: 1 DLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDV 60
Query: 102 LHKGLGDLMDMCDAVEDRFTQRI 124
L KGL DL+D+CDAV ++FT+++
Sbjct: 61 LRKGLDDLIDLCDAVTEKFTEQL 83
>Hs7705740 [K] KOG3438 DNA-directed RNA polymerase subunit L
Length = 133
Score = 103 bits (258), Expect = 3e-23
Identities = 47/92 (51%), Positives = 66/92 (71%)
Query: 35 LTEATSEDGTSASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYG 94
+ +A D +F + +EDHTLGN+LRYMIMKNPEVEFCGY+ HPSE+ +++RIQT G
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88
Query: 95 KITAVEALHKGLGDLMDMCDAVEDRFTQRIRE 126
+ AVE +GL +LM++C V D+F I++
Sbjct: 89 TLPAVEPFQRGLNELMNVCQHVLDKFEASIKD 120
>7298551 [K] KOG3438 DNA-directed RNA polymerase subunit L
Length = 105
Score = 77.0 bits (188), Expect = 4e-15
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 45 SASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHK 104
S +F T+E HTLGN L+ +I + PEV+FCGY+IPHP+E LH RIQ+ + A++ L +
Sbjct: 17 SRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQS-RRDRAIDILKR 75
Query: 105 GLGDLMDMCDAVEDRFTQRIRE 126
GL DL +CD F + + E
Sbjct: 76 GLEDLEGLCDHTIVTFEKEMAE 97
>7298381 [K] KOG4392 RNA polymerase subunit L
Length = 117
Score = 73.6 bits (179), Expect = 4e-14
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 33 KLLTEATSEDGTSASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQT 92
K++ E ++ +A F I EDHTLGN +R ++K+P V F GY +PHP E+ IRIQT
Sbjct: 18 KIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQT 77
Query: 93 YGKITAVEALHKGLGDLMDMCDAVEDRFTQRIRE 126
+ EA + DL+ E+RF I+E
Sbjct: 78 TADYSPQEAFMNAITDLLAELSLFEERFKDAIKE 111
>CE18986 [K] KOG4392 RNA polymerase subunit L
Length = 122
Score = 68.9 bits (167), Expect = 1e-12
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 33 KLLTEATSEDGTSASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQT 92
K E ++ +A F I EDHTLGN L+ ++K+PEV F GY PHP E+ + +RIQT
Sbjct: 17 KFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQT 76
Query: 93 YGKITAVEALHKGLGDLMDMCDAVEDRFTQRIRE 126
T +AL + DL+ +E R I++
Sbjct: 77 TNNTTPADALTTAITDLVGELSLLEHRIDAAIKK 110
>Hs5453932 [K] KOG4392 RNA polymerase subunit L
Length = 117
Score = 67.8 bits (164), Expect = 2e-12
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 48 FRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHKGLG 107
F I EDHTLGN ++ ++K+P+V F GY +PHP E+ + IR+QT + EA +
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 108 DLMDMCDAVEDRFTQRIRE 126
DL+ +E+RF I++
Sbjct: 93 DLISELSLLEERFRVAIKD 111
>Hs21704274 [K] KOG4392 RNA polymerase subunit L
Length = 158
Score = 67.0 bits (162), Expect = 4e-12
Identities = 31/76 (40%), Positives = 46/76 (59%)
Query: 48 FRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHKGLG 107
F I EDHTLGN ++ ++K+P+V F GY +PHP E+ + IR+QT + EA +
Sbjct: 32 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 91
Query: 108 DLMDMCDAVEDRFTQR 123
DL+ +E+RF R
Sbjct: 92 DLISELSLLEERFRVR 107
>CE00225 [K] KOG3438 DNA-directed RNA polymerase subunit L
Length = 144
Score = 66.6 bits (161), Expect = 5e-12
Identities = 27/82 (32%), Positives = 52/82 (62%)
Query: 41 EDGTSASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVE 100
+D ++ + + +EDHT+GN++++++ + EVEFCGY++PHP E+ + R+QT I A+E
Sbjct: 56 QDPSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALE 115
Query: 101 ALHKGLGDLMDMCDAVEDRFTQ 122
L K + + + +F +
Sbjct: 116 VLAKAFESVEQIFSTIRGKFEE 137
>Hs21704272 [K] KOG4392 RNA polymerase subunit L
Length = 115
Score = 66.2 bits (160), Expect = 7e-12
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 48 FRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHKGLG 107
F I EDHTLGN ++ ++K+P+V F GY +PHP E+ + IR+QT + EA +
Sbjct: 32 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 91
Query: 108 DLMDMCDAVEDRF 120
DL+ +E+RF
Sbjct: 92 DLISELSLLEERF 104
>HsM14702177 [K] KOG4392 RNA polymerase subunit L
Length = 115
Score = 65.1 bits (157), Expect = 1e-11
Identities = 29/73 (39%), Positives = 45/73 (60%)
Query: 48 FRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHKGLG 107
F + EDHTLGN ++ ++K+P+V F GY +PHP E+ + IR+QT + EA +
Sbjct: 32 FTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 91
Query: 108 DLMDMCDAVEDRF 120
DL+ +E+RF
Sbjct: 92 DLISELSLLEERF 104
>At2g29540 [K] KOG3438 DNA-directed RNA polymerase subunit L
Length = 122
Score = 59.3 bits (142), Expect = 8e-10
Identities = 31/81 (38%), Positives = 47/81 (57%), Gaps = 1/81 (1%)
Query: 46 ASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHKG 105
ASF +++EDHTL N +R+++ ++P V Y+IPHPS ++IR+QT G A E
Sbjct: 12 ASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGD-PAREVFKDA 70
Query: 106 LGDLMDMCDAVEDRFTQRIRE 126
+LM M V F + + E
Sbjct: 71 CQELMQMNRHVRSVFDKAVAE 91
>At3g52090 [K] KOG4392 RNA polymerase subunit L
Length = 116
Score = 57.4 bits (137), Expect = 3e-09
Identities = 25/80 (31%), Positives = 48/80 (59%)
Query: 45 SASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHK 104
+ASF + EDHT+GN +R + ++ V F GY +PHP + + +RI T + + ++A ++
Sbjct: 30 AASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQ 89
Query: 105 GLGDLMDMCDAVEDRFTQRI 124
+ DL D ++++F +
Sbjct: 90 AINDLDKELDYLKNQFEAEV 109
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,221,754
Number of Sequences: 60738
Number of extensions: 223534
Number of successful extensions: 492
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 13
length of query: 127
length of database: 30,389,216
effective HSP length: 103
effective length of query: 24
effective length of database: 24,133,202
effective search space: 579196848
effective search space used: 579196848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)