ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6388 good U KOG3316 Intracellular trafficking, secretion, and vesicular transport Transport protein particle (TRAPP) complex subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6388 2224680 2223871 -270
(270 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR115c [U] KOG3316 Transport protein particle (TRAPP) complex s... 211 9e-55
At3g05000 [U] KOG3316 Transport protein particle (TRAPP) complex... 79 5e-15
SPAC13G6.05c [U] KOG3316 Transport protein particle (TRAPP) comp... 69 7e-12
CE18881 [U] KOG3316 Transport protein particle (TRAPP) complex s... 65 1e-10
Hs20541692 [U] KOG3316 Transport protein particle (TRAPP) comple... 62 9e-10
7300006 [U] KOG3316 Transport protein particle (TRAPP) complex s... 54 2e-07
Hs13129120 [U] KOG3316 Transport protein particle (TRAPP) comple... 52 1e-06
>YOR115c [U] KOG3316 Transport protein particle (TRAPP) complex subunit
Length = 268
Score = 211 bits (537), Expect = 9e-55
Identities = 109/256 (42%), Positives = 164/256 (63%), Gaps = 12/256 (4%)
Query: 5 NPQRNPVVDTPEQIERRRIVEQFLLFQESLPKVNALSYQWLLNEMVPMSMAVENNXXXXX 64
+PQ +P EQ +R +Q+ +F+ SLPKV+ YQ LLNEMVP++M +E
Sbjct: 11 HPQSSPQGPLTEQ---QRAQQQYQIFENSLPKVSQSVYQMLLNEMVPLAMGIERQISGDV 67
Query: 65 XXXXXXXXXXXXXXXEINEEIHKLSLNK---LEYVPSHKLIAQLCHASDEVKEKVTERLY 121
IN I +L + + ++ + SH LI +L A +E KEKV RL
Sbjct: 68 ISSDSNVTSENG---NINNMIKRLKIEEHHTVDIIRSHNLIHELYKADEEEKEKVLARLR 124
Query: 122 KIGSGIGSKMTELLIFSNNPNLSFNSMDTLGMVRFICKEVWKLLYGKQIDNLKTNHRGVF 181
IG IG K++ELLIFSNNPNL F MD L +++FIC++VWK ++GKQIDNLKTNHRG F
Sbjct: 125 NIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLKTNHRGTF 184
Query: 182 YLFDYEFQPIQNFALDDD-EEKLLSTVSPYIQVPLGVISGILTSLGVPEDDILVSFTYVD 240
YL DY+++PIQ+F+L++D + + L + P++++P+G+I G+L+SLG ++++ +++D
Sbjct: 185 YLLDYDYRPIQSFSLEEDAKNEELKMIEPFLEIPVGIIRGVLSSLGYSSEEVICLASFID 244
Query: 241 IPEDKKKPVGQFPKGL 256
P D+ K FPKG+
Sbjct: 245 RPTDRPKTA--FPKGV 258
>At3g05000 [U] KOG3316 Transport protein particle (TRAPP) complex subunit
Length = 173
Score = 79.3 bits (194), Expect = 5e-15
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 17/127 (13%)
Query: 114 EKVTERLYKIGSGIGSKMTELLIFSNNPNLSFNSMDTLGMVRFICKEVWKLLYGKQIDNL 173
E R+ IG +G +++E P S D L ++FICK+ W ++ KQIDNL
Sbjct: 31 ELAARRIEAIGYQVGHQLSERYTMER-PRFS----DHLEAIKFICKDFWSEVFKKQIDNL 85
Query: 174 KTNHRGVFYLFDYEFQPIQNFALDDD------------EEKLLSTVSPYIQVPLGVISGI 221
KTNHRG F L D +F+ + ++D E K VS Y+ P G+I G+
Sbjct: 86 KTNHRGTFVLQDNKFRWLSRVSIDPSSENETQDPSTPGESKAAQAVSMYLYFPCGIIRGV 145
Query: 222 LTSLGVP 228
L++LG+P
Sbjct: 146 LSNLGIP 152
>SPAC13G6.05c [U] KOG3316 Transport protein particle (TRAPP) complex subunit
Length = 245
Score = 68.9 bits (167), Expect = 7e-12
Identities = 38/119 (31%), Positives = 62/119 (51%), Gaps = 6/119 (5%)
Query: 108 ASDEVKEKVTERLYKIGSGIGSKMTELLIFSNNPNLSFNSMDTLGMVRFICKEVWKLLYG 167
+S++ E + L IG +G K+TE L+ + N +T ++RF+C+E+W +++
Sbjct: 31 SSEKSIESDFQMLESIGFQVGRKITERLLLNRN-----RITETTDVMRFLCRELWPIVFR 85
Query: 168 KQIDNLKTNHRGVFYLFDYEFQPIQNFALDDDEEKLLSTVSPYIQVPLGVISGILTSLG 226
K +DNLKTN RG+F L D F E + +PY P G I G++ + G
Sbjct: 86 KPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTE-MAQITTPYFYFPSGFIRGVVYTFG 143
>CE18881 [U] KOG3316 Transport protein particle (TRAPP) complex subunit
Length = 185
Score = 65.1 bits (157), Expect = 1e-10
Identities = 37/121 (30%), Positives = 66/121 (53%), Gaps = 14/121 (11%)
Query: 107 HASDEVKEKVTERLYKIGSGIGSKMTELLIFSNNPNLSFNSMDTLGMVRFICKEVWKLLY 166
HA+ E K L IG +G ++ E + +P L + L +V+FICK+ W ++
Sbjct: 56 HANAETK------LESIGFRVGRQLVEK-VSKESPKL----VTELEIVKFICKDFWSSVF 104
Query: 167 GKQIDNLKTNHRGVFYLFDYEFQPIQNFALDDDEEKLLSTVSPYIQVPLGVISGILTSLG 226
GKQ+DNL+TNH+GV+ + D F +++F + ++ + ++ P G++ G L L
Sbjct: 105 GKQVDNLRTNHQGVYVVQDGRFTTLRSF---PEGDQYVKESGYFLAFPCGLLRGALAGLN 161
Query: 227 V 227
+
Sbjct: 162 I 162
>Hs20541692 [U] KOG3316 Transport protein particle (TRAPP) complex subunit
Length = 158
Score = 62.0 bits (149), Expect = 9e-10
Identities = 29/79 (36%), Positives = 50/79 (62%), Gaps = 3/79 (3%)
Query: 149 DTLGMVRFICKEVWKLLYGKQIDNLKTNHRGVFYLFDYEFQPIQNFALDDDEEKLLSTVS 208
D L +++FICK+ W ++ KQIDNL+TNH+G++ L D +F+ + + ++ L S
Sbjct: 60 DELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAG---KQYLEHAS 116
Query: 209 PYIQVPLGVISGILTSLGV 227
Y+ G+I G L++LG+
Sbjct: 117 KYLAFTCGLIRGGLSNLGI 135
>7300006 [U] KOG3316 Transport protein particle (TRAPP) complex subunit
Length = 152
Score = 53.9 bits (128), Expect = 2e-07
Identities = 37/129 (28%), Positives = 60/129 (45%), Gaps = 10/129 (7%)
Query: 99 HKLIAQLCHASDEVKEKVTERLYKIGSGIGSKMTELLIFSNNPNLSFNSMDTLGMVRFIC 158
H I C D KE L IG G ++ E L + D L ++FIC
Sbjct: 11 HAEIVNYC--LDSNKEHDLATLEYIGFTTGYRLIERLTREVS-----RFKDELETMKFIC 63
Query: 159 KEVWKLLYGKQIDNLKTNHRGVFYLFDYEFQPIQNFALDDDEEKLLSTVSPYIQVPLGVI 218
+ W L+Y KQ+DNL+TN+ G++ + D F+ + + K L ++ G++
Sbjct: 64 TDFWMLIYKKQVDNLRTNNHGMYVVQDKAFRFLTRIS---PGTKQLEHAPKFVAFTCGLV 120
Query: 219 SGILTSLGV 227
G L++LG+
Sbjct: 121 RGALSNLGI 129
>Hs13129120 [U] KOG3316 Transport protein particle (TRAPP) complex subunit
Length = 173
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 121 YKIGSGIGSKMTELLIFSNNPNLSFNSMDTLGMVRFICKEVWKLLYGKQIDNLKTNHRGV 180
+++G +G ++ P + + L +++F+CK++W ++ KQ+D+L+TNH+G
Sbjct: 56 FRVGQALGERL---------PRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGT 106
Query: 181 FYLFDYEFQPIQNFALDDDEEKLLSTVSPYIQVPLGVISGILTSLGV 227
+ L D F + A + L ++ G++ G L +LG+
Sbjct: 107 YVLQDNSFPLLLPMA---SGLQYLEEAPKFLAFTCGLLRGALYTLGI 150
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,821,303
Number of Sequences: 60738
Number of extensions: 604053
Number of successful extensions: 1610
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1599
Number of HSP's gapped (non-prelim): 7
length of query: 270
length of database: 30,389,216
effective HSP length: 105
effective length of query: 165
effective length of database: 24,011,726
effective search space: 3961934790
effective search space used: 3961934790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)