ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6597 check: MH A KOG0337 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6597 2297629 2294711 -973
(973 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL031w [A] KOG0337 ATP-dependent RNA helicase 1225 0.0
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 618 e-176
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 460 e-129
CE27553 [A] KOG0337 ATP-dependent RNA helicase 441 e-123
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 404 e-112
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 385 e-106
YLL008w [A] KOG0338 ATP-dependent RNA helicase 238 4e-62
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 228 3e-59
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 225 3e-58
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 213 9e-55
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 210 1e-53
Hs7662318 [A] KOG0334 RNA helicase 209 1e-53
YHR065c [A] KOG0330 ATP-dependent RNA helicase 206 1e-52
7298752 [A] KOG0330 ATP-dependent RNA helicase 206 2e-52
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 204 5e-52
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 202 3e-51
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 202 3e-51
CE28369 [A] KOG0335 ATP-dependent RNA helicase 202 3e-51
CE24451 [A] KOG0335 ATP-dependent RNA helicase 202 3e-51
7304081 [A] KOG0338 ATP-dependent RNA helicase 201 6e-51
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 200 1e-50
CE00337 [A] KOG0330 ATP-dependent RNA helicase 199 2e-50
CE27030 [A] KOG0338 ATP-dependent RNA helicase 197 5e-50
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 197 7e-50
SPCC10H11.01 [A] KOG0334 RNA helicase 196 2e-49
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 195 3e-49
7299061 [A] KOG0335 ATP-dependent RNA helicase 194 6e-49
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 193 1e-48
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 193 1e-48
7293060 [A] KOG0334 RNA helicase 193 1e-48
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 192 2e-48
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 192 2e-48
7295314 [A] KOG0331 ATP-dependent RNA helicase 192 2e-48
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 192 3e-48
YGL078c [A] KOG0331 ATP-dependent RNA helicase 191 4e-48
YOR204w [A] KOG0335 ATP-dependent RNA helicase 191 5e-48
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 190 1e-47
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 189 1e-47
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 189 1e-47
YBR237w [A] KOG0334 RNA helicase 189 2e-47
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 188 3e-47
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 187 7e-47
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 187 7e-47
YNL112w [A] KOG0331 ATP-dependent RNA helicase 186 1e-46
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 186 1e-46
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 186 2e-46
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 186 2e-46
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 185 3e-46
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 185 3e-46
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 184 6e-46
7290853 [A] KOG0331 ATP-dependent RNA helicase 183 1e-45
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 182 2e-45
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 182 3e-45
YPL119c [A] KOG0335 ATP-dependent RNA helicase 181 4e-45
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 181 5e-45
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 181 6e-45
7296646 [A] KOG0331 ATP-dependent RNA helicase 180 8e-45
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 180 1e-44
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 178 3e-44
YHR169w [A] KOG0340 ATP-dependent RNA helicase 177 5e-44
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 177 5e-44
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 177 5e-44
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 177 9e-44
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 176 1e-43
CE18785 [A] KOG0331 ATP-dependent RNA helicase 176 1e-43
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 176 2e-43
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 176 2e-43
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 176 2e-43
7298989 [A] KOG0336 ATP-dependent RNA helicase 175 4e-43
Hs13514831 [A] KOG0343 RNA Helicase 174 6e-43
CE17559 [A] KOG0339 ATP-dependent RNA helicase 174 6e-43
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 172 2e-42
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 172 2e-42
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 172 3e-42
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 172 3e-42
7299006 [A] KOG0345 ATP-dependent RNA helicase 172 3e-42
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 171 4e-42
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 171 5e-42
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 171 7e-42
CE25231 [A] KOG0343 RNA Helicase 170 9e-42
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 169 1e-41
7303950 [A] KOG0340 ATP-dependent RNA helicase 169 1e-41
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 169 2e-41
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 169 2e-41
SPAC1093.05 [A] KOG0343 RNA Helicase 168 4e-41
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 168 4e-41
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 167 6e-41
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 167 7e-41
7293369 [A] KOG0343 RNA Helicase 167 7e-41
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 167 1e-40
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 167 1e-40
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 167 1e-40
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 166 1e-40
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 166 1e-40
CE25121 [A] KOG0335 ATP-dependent RNA helicase 166 2e-40
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 166 2e-40
CE22474 [A] KOG0336 ATP-dependent RNA helicase 166 2e-40
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 166 2e-40
CE23832 [A] KOG0341 DEAD-box protein abstrakt 165 3e-40
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 163 1e-39
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 162 2e-39
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 162 2e-39
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 162 3e-39
CE09012 [A] KOG0335 ATP-dependent RNA helicase 161 4e-39
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 161 5e-39
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 158 3e-38
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 158 3e-38
CE07736 [A] KOG0335 ATP-dependent RNA helicase 157 6e-38
At3g16840 [A] KOG0347 RNA helicase 157 8e-38
YJL033w [A] KOG0343 RNA Helicase 156 1e-37
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 156 1e-37
YGL171w [A] KOG0344 ATP-dependent RNA helicase 156 2e-37
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 156 2e-37
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 155 2e-37
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 154 5e-37
CE23814 [A] KOG0340 ATP-dependent RNA helicase 154 5e-37
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 154 5e-37
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 154 6e-37
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 153 1e-36
YFL002c [A] KOG0345 ATP-dependent RNA helicase 152 2e-36
7293941 [A] KOG0344 ATP-dependent RNA helicase 152 2e-36
YOR046c [A] KOG0332 ATP-dependent RNA helicase 152 3e-36
7296891 [A] KOG0341 DEAD-box protein abstrakt 150 1e-35
At1g20920 [A] KOG0334 RNA helicase 149 2e-35
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 148 5e-35
At3g09620 [A] KOG0334 RNA helicase 148 5e-35
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 147 8e-35
YDL084w [A] KOG0329 ATP-dependent RNA helicase 147 1e-34
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 146 1e-34
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 145 2e-34
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 145 2e-34
CE03025 [A] KOG0329 ATP-dependent RNA helicase 145 2e-34
ECU10g1680 [A] KOG0343 RNA Helicase 145 3e-34
CE03821 [A] KOG0345 ATP-dependent RNA helicase 145 3e-34
7298204 [A] KOG0335 ATP-dependent RNA helicase 145 3e-34
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 144 7e-34
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 144 9e-34
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 144 9e-34
At4g34910 [A] KOG0346 RNA helicase 144 9e-34
YBR142w [A] KOG0347 RNA helicase 143 1e-33
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 142 3e-33
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 142 3e-33
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 142 3e-33
7294797 [A] KOG0339 ATP-dependent RNA helicase 141 6e-33
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 140 7e-33
YDL160c [A] KOG0326 ATP-dependent RNA helicase 140 1e-32
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 139 2e-32
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 139 2e-32
7297629 [A] KOG0326 ATP-dependent RNA helicase 139 2e-32
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 139 3e-32
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 138 4e-32
7296990 [A] KOG0329 ATP-dependent RNA helicase 138 4e-32
CE00839 [A] KOG0326 ATP-dependent RNA helicase 137 6e-32
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 137 8e-32
CE11402 [A] KOG0334 RNA helicase 136 1e-31
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 136 1e-31
CE11190 [A] KOG0347 RNA helicase 136 2e-31
7294824 [K] KOG4284 DEAD box protein 135 2e-31
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 134 5e-31
CE28031 [A] KOG0334 RNA helicase 134 5e-31
CE27427 [A] KOG0334 RNA helicase 134 5e-31
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 134 5e-31
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 134 7e-31
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 134 7e-31
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 134 7e-31
7302399 [A] KOG0347 RNA helicase 134 9e-31
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 133 2e-30
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 132 2e-30
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 130 1e-29
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 129 2e-29
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 128 4e-29
Hs9506931 [A] KOG0346 RNA helicase 128 5e-29
At5g54910 [A] KOG0343 RNA Helicase 127 8e-29
CE06239 [A] KOG0344 ATP-dependent RNA helicase 126 2e-28
Hs14251212 [K] KOG4284 DEAD box protein 125 4e-28
CE29052 [A] KOG0335 ATP-dependent RNA helicase 125 4e-28
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 123 1e-27
SPBC4F6.07c [A] KOG0347 RNA helicase 123 2e-27
YKR024c [A] KOG0348 ATP-dependent RNA helicase 122 2e-27
7295505 [A] KOG0346 RNA helicase 122 3e-27
CE27728 [A] KOG0346 RNA helicase 121 6e-27
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 120 1e-26
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 119 2e-26
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 119 3e-26
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 118 5e-26
SPCC1494.06c [A] KOG0346 RNA helicase 118 5e-26
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 118 5e-26
Hs9966805 [A] KOG0347 RNA helicase 116 1e-25
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 115 3e-25
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 115 4e-25
YLR276c [A] KOG0346 RNA helicase 114 7e-25
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 114 7e-25
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 112 4e-24
7293348 [A] KOG0348 ATP-dependent RNA helicase 111 6e-24
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 109 2e-23
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 109 2e-23
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 108 3e-23
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 108 3e-23
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 108 4e-23
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 107 7e-23
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 106 2e-22
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 106 2e-22
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 106 2e-22
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 105 3e-22
7296165 [A] KOG0330 ATP-dependent RNA helicase 105 3e-22
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 100 1e-20
CE18221 [A] KOG0332 ATP-dependent RNA helicase 98 5e-20
CE18220 [A] KOG0332 ATP-dependent RNA helicase 98 5e-20
CE18219 [A] KOG0332 ATP-dependent RNA helicase 98 5e-20
7290730 [A] KOG0331 ATP-dependent RNA helicase 96 3e-19
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 95 5e-19
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 94 1e-18
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 93 2e-18
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 92 3e-18
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 92 4e-18
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 91 1e-17
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 91 1e-17
CE29051 [A] KOG0335 ATP-dependent RNA helicase 91 1e-17
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 90 2e-17
CE28485 [K] KOG4284 DEAD box protein 90 2e-17
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 87 1e-16
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 85 5e-16
CE26264 [A] KOG0335 ATP-dependent RNA helicase 84 1e-15
CE27336 [A] KOG0334 RNA helicase 78 8e-14
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 75 5e-13
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 74 1e-12
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 73 2e-12
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 70 2e-11
YGL064c [A] KOG0335 ATP-dependent RNA helicase 68 8e-11
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 64 9e-10
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 63 3e-09
Hs22045464 [A] KOG0343 RNA Helicase 62 4e-09
CE27320 [A] KOG0335 ATP-dependent RNA helicase 61 7e-09
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 56 2e-07
Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune 56 3e-07
At2g28600 [A] KOG0339 ATP-dependent RNA helicase 53 2e-06
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 53 3e-06
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 1225 bits (3170), Expect = 0.0
Identities = 637/991 (64%), Positives = 753/991 (75%), Gaps = 20/991 (2%)
Query: 2 VDSSKRALPAEDYSSEDED--AFDIAGDIALNAXXXXXXXXXXXXXXXGFQAEVQDVIEF 59
V KR L +D + +ED AFDIA +IALN +VQDVIE+
Sbjct: 4 VQKRKRDLEDQDDNGSEEDDIAFDIANEIALNDSESDANDSDSEVEADYGPNDVQDVIEY 63
Query: 60 SSDXXXXXXXXXXXXXXXXXXA--GPIVDSKFPSLELSDDEKKA-----TNESDDDLNDY 112
SSD + FP LE+SDDE A T + +DD+N+Y
Sbjct: 64 SSDEEEGVNNKKKAENKDIKKKKNSKKEIAAFPMLEMSDDENNASGKTQTGDDEDDVNEY 123
Query: 113 FNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMART 172
F+T KHKKGSF SFGLSK+VL NI +KGFRQPTPIQRKTIPLILQ RDIVGMART
Sbjct: 124 FSTNNLEKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMART 183
Query: 173 GSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTG 232
GSGKTAAF+LPM+EKLK+HS KIG RAVILSPSRELA+QT VFK+F++G++LRS+LLTG
Sbjct: 184 GSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTG 243
Query: 233 GDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLN 292
GDSLE+QFGMMM NPDV+IATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLN
Sbjct: 244 GDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLN 303
Query: 293 ELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDE 352
ELL + PT RQTLLFSATLP+SLVDF KAGL NPVLVRLDAETK+SENLEMLF+S K +
Sbjct: 304 ELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNAD 363
Query: 353 REANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXX---XXXXXXXXXXXXXXXXXRRL 409
REANLLY+LQE IK+P+AT Q++KL+ N +++
Sbjct: 364 REANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKM 423
Query: 410 PNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLT 469
P ANE+PSEKATI+FVPTRHHVEY++QLL++CGYL+SYIYG L+QHARK+QLYNFRAGLT
Sbjct: 424 PAANELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLT 483
Query: 470 SILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXX 529
SILVVTDVAARGVDIP+LANVINY+LPGSSKIF+HRVGRTARAGN+GWA+SIV+
Sbjct: 484 SILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPY 543
Query: 530 XXXXXXXXGKKILLTPMYESSCQILRKKAESEG--NNNFTDPKVSYTTRMVLGACPRSEI 587
GKKILLTPMY+S +++K+ EG F PK+SYT R+VLG+CPR ++
Sbjct: 544 LLDLELFLGKKILLTPMYDSLVDVMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDV 603
Query: 588 DGMGDLYSNMIKSDFELNTVKGVALKAEKLYFRTRTPASAESMKRSKEILRSGWDEQNIY 647
+G+GDLY N++ S+F+L K A+KAEKLY+RTRT AS ES+KRSKEI+ SGWD QN +
Sbjct: 604 EGLGDLYKNLMSSNFDLQLAKKTAMKAEKLYYRTRTSASPESLKRSKEIISSGWDAQNAF 663
Query: 648 FGKNAEKEKLDFLAKLQHRNNKETVFEFARNPDDEMSVLMKRRRRQIAPIQRKAKERQEL 707
FGKN EKEKLDFLAKLQ+R NKETVFEF RNPDDEM+V MKRRR+Q+APIQRKA ER+EL
Sbjct: 664 FGKNEEKEKLDFLAKLQNRRNKETVFEFTRNPDDEMAVFMKRRRKQLAPIQRKATERREL 723
Query: 708 LEKERMIGLRHSIEDEILKGEDNEVGYSVPDEVLKEFEDADVLLE--EQENIXXXXXXTF 765
LEKERM GL + + KG+D E GY+V ++ LKEFEDA LLE E EN +F
Sbjct: 724 LEKERMAGLHILSKMKFWKGDDVETGYTVSEDALKEFEDAHQLLEAQENENKKKKKPKSF 783
Query: 766 RDPTFYLSHFAPTSDIQDKQLQISSGFTNDASNAAFDLANDDKVQVHKQTATVKWDKKRK 825
+DPTF+LSH+AP DIQDKQLQI++GF NDA+ AA+DL +DDKVQVHKQTATVKWDKKRK
Sbjct: 784 KDPTFFLSHYAPAGDIQDKQLQITNGFANDAAQAAYDLNSDDKVQVHKQTATVKWDKKRK 843
Query: 826 KYVNTQGLDNKKYIIGESGQKIPASFRSGKFQDWSKARKIAPLKVGARESTIPSNLLADP 885
KYVNTQG+DNKKYIIGESGQKI ASFRSG+F DWSKAR + PLKVG+RE++IPSNLL DP
Sbjct: 844 KYVNTQGIDNKKYIIGESGQKIAASFRSGRFDDWSKARNLKPLKVGSRETSIPSNLLEDP 903
Query: 886 T---SPSERTVGGKFKHKTQKAPKLPDKHRDDYAFQKKKVEAALERGVRVKGY-NGPGMK 941
+ + + RTV GKFKHK KAPK+PDKHRD+Y QKKKVE AL+ G+ VKGY N PG++
Sbjct: 904 SQGPAANGRTVRGKFKHKQMKAPKMPDKHRDNYYSQKKKVEKALQSGISVKGYNNAPGLR 963
Query: 942 QEIKSVDXXXXXXXXXXXXXXXNARPTKRRK 972
E+KS + NARP+K+RK
Sbjct: 964 SELKSTEQIRKDRIIAEKKRAKNARPSKKRK 994
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 618 bits (1594), Expect = e-176
Identities = 372/897 (41%), Positives = 514/897 (56%), Gaps = 103/897 (11%)
Query: 98 EKKATNESDDDLNDYFNTT---ADAAAKHKKGS-----FASFGLSKLVLINISKKGFRQP 149
E N SD+D +Y + ++ K KKG+ F S GL++ +L I KKGF+ P
Sbjct: 33 ENVGENVSDEDDGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAP 92
Query: 150 TPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELA 209
TPIQRKTIPL+L+ RD+VGMARTGSGKTAAFV+PMIE LK+ A RA+ILSP+RELA
Sbjct: 93 TPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELA 152
Query: 210 IQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLK 269
+QT +V K+FSKG+DLRS+ + GG SLE+QF ++ G PD+V+ATPGRFLHLKVEM L+L
Sbjct: 153 LQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELS 212
Query: 270 SVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLV 329
S+EYVVFDEADRLFEMGF QL E+L A PT+RQTLLFSATLP +LVDFAKAGL +PVLV
Sbjct: 213 SIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLV 272
Query: 330 RLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXX 389
RLD E+K+S +L+ F S+K EREA LL +LQ+ IK+P+ + +++ N
Sbjct: 273 RLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKR 332
Query: 390 XXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIY 449
+E S +T+VFVPT+HHVEYV++LL GY VS IY
Sbjct: 333 ALELAL---------------KGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIY 377
Query: 450 GALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRT 509
G+L+Q AR ++ NFR G T++LVVTDVA+RG+DIPLLANVINY P K+F+HRVGRT
Sbjct: 378 GSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRT 437
Query: 510 ARAGNRGWAFSIVSXXXXXXXXXXXXXXGKKILLTPMYESSCQILRKKAESEGNNNFTDP 569
ARAG GWA+S+V + L P+ SS Q+ TD
Sbjct: 438 ARAGRTGWAYSLVRAEDAGYLLDL-----QLFLNRPLVTSSKQVK------------TDS 480
Query: 570 KVSYTTRMVLGACPRSEIDGMGDLYSNMIKSDFELNTVKGVALKAEKLYFRTRTPASAES 629
+T ++VLG+ P+ + + + ++ D EL + VA + EKLYFRTR SAES
Sbjct: 481 DCDFTKQIVLGSLPQELVAELLEWVQRIVSRDVELQQLSNVAARGEKLYFRTRATCSAES 540
Query: 630 MKRSKEILRS-GWDEQNIYFGK----NAEKEKLDFLAKLQHRNNKETVFEFAR--NPDDE 682
KR+KE++ S GW N FG AE++ + L+K+ ETVFE + + E
Sbjct: 541 AKRAKELVDSKGWSSNNPLFGDVSVIEAEEKYAELLSKVSSYRPSETVFEIGQRGHLKTE 600
Query: 683 MSVLMKRRRRQIAPIQRKAKERQELLEKERMIGLRHSIEDEILKGEDNEVGYSVPDEVLK 742
+ +M++RR ++ P K++ + + + + E E+ +EV K
Sbjct: 601 AAEIMRKRRNKVKPKGIKSEVASDKITDSSPGNMSEASESEL-------------EEVFK 647
Query: 743 EFEDADVLLEEQENIXXXXXXTFRDPTFYLSHFAPTSDIQDKQLQISSG--FTNDASNAA 800
+ + F+D +Y+SH+AP IQ+ I+SG FT A +A
Sbjct: 648 ----------NPKELSKKKTTDFKDKEYYMSHYAPKESIQETGYAINSGENFTTAARHAI 697
Query: 801 FDLANDDKVQVHKQTATVKWDKKRKKYVN-----TQGLDNKKYIIGESGQKIPASFRSGK 855
DL ND+ ++ ++ +WD K+KK+VN + K I GESG K+PA++RSG+
Sbjct: 698 LDLTNDEGIEQSRKGGQ-RWDPKKKKFVNIINDEDGSKGSPKIIRGESGVKLPATYRSGR 756
Query: 856 FQDWSKARKIAPLKVGARESTIPSNLLADPTSPSERTVGGKFKHKTQKAPKLPDKHRDDY 915
F +W ++ GA +S I N ++KH + PK DK RD+Y
Sbjct: 757 FDEWKASKAF-----GANDSPIREN--------------KRYKHNKLQTPKPADKFRDNY 797
Query: 916 AFQKKKVEAALERGVRVKGYNGPGMKQEIKSVDXXXXXXXXXXXXXXXNARPTKRRK 972
Q K+ A ERG+ +K + E+KS N RP+K+ +
Sbjct: 798 HKQNKRNREAKERGIGIK------VNSELKSAVEIRKARELKEKRLAKNNRPSKKHR 848
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 460 bits (1184), Expect = e-129
Identities = 299/794 (37%), Positives = 427/794 (53%), Gaps = 101/794 (12%)
Query: 89 FPSLELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQ 148
FP+ E + D + T E A K K G F S GLS V I KKG++
Sbjct: 68 FPTSECTSDVEPDTREM---------VRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKV 118
Query: 149 PTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSREL 208
PTPIQRKTIP+IL +D+V MARTGSGKTA F+LPM E+LKTHSA+ G RA+ILSP+REL
Sbjct: 119 PTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTREL 178
Query: 209 AIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDL 268
A+QT + KE K + L++ L+ GGD +EDQF + NPD++IATPGR +H+ VEM+L L
Sbjct: 179 ALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLKL 238
Query: 269 KSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVL 328
+SVEYVVFDEADRLFEMGF EQL E++ P QT+LFSATLP LV+FA+AGL+ PVL
Sbjct: 239 QSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAGLTEPVL 298
Query: 329 VRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXX 388
+RLD +TK++E L+ F +++D + A LL+LL ++
Sbjct: 299 IRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVR---------------------- 336
Query: 389 XXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYI 448
+ T+VFV T+HH EY+T+LL ++I
Sbjct: 337 ----------------------------PQDQTVVFVATKHHAEYLTELLTTQRVSCAHI 368
Query: 449 YGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGR 508
Y AL+ ARK L F G S L+VTD+AARG+DIPLL NVINYS P K+F+HRVGR
Sbjct: 369 YSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGR 428
Query: 509 TARAGNRGWAFSIVSXXXXXXXXXXXXXXGKKILLT-PMYESSCQILRKKAESEGNNNFT 567
ARAG G A+S+V+ G+ + L P+ E S A +G
Sbjct: 429 VARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPLKEPS-----GVAGVDG----- 478
Query: 568 DPKVSYTTRMVLGACPRSEIDGMGDLYSNMIKSDFELNTVKGVALKAEKLYFRTRTPASA 627
+LG P+S +D + +++ EL + VA A++ Y R+R S
Sbjct: 479 ----------MLGRVPQSVVDEEDSGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSP 528
Query: 628 ESMKRSKEILRSGWDEQNIYFGKNAEKE--KLDFLAKLQHRNNKETVFEFARNPDDEMSV 685
ES+KR+KE+ G ++ + E+E +L + +++ ++ T+FE + D S
Sbjct: 529 ESIKRAKEMDLVGLGLHPLFSSRFEEEELQRLRLVDSIKNYRSRATIFEINASSRDLCSQ 588
Query: 686 LMKRRRRQ----IAPIQRKAKERQELLEKERMIGLRHS----IEDEILKGEDNEVGYSVP 737
+M+ +R++ IA Q+ + RQE ++E +G S E + K E+ E G SV
Sbjct: 589 VMRAKRQKDRKAIARFQQGQQGRQE--QQEGPVGPAPSRPALQEKQPEKEEEEEAGESVE 646
Query: 738 D---EVLKEFEDADVLLEEQENIXXXXXXTFRDPTFYLSHFAPTSDIQDKQLQIS---SG 791
D EV+ + RD FY+ + P ++ L IS
Sbjct: 647 DIFSEVVGRKRQRSG--PNRGAKRRREEARQRDQEFYIP-YRPKDFDSERGLSISGEGGA 703
Query: 792 FTNDASNAAFDLANDDKVQVHKQTATVKWDKKRKKYVNTQGLDNKKYIIGESGQKIPASF 851
F A+ A DL D+ + + +KWD+K+K++V G ++KK I ESG+ I +S+
Sbjct: 704 FEQQAAGAVLDLMGDEAQNLTRGRQQLKWDRKKKRFVGQSGQEDKKKIKTESGRYISSSY 763
Query: 852 RSGKFQDWSKARKI 865
+ +Q W + +KI
Sbjct: 764 KRDLYQKWKQKQKI 777
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 441 bits (1133), Expect = e-123
Identities = 281/785 (35%), Positives = 416/785 (52%), Gaps = 74/785 (9%)
Query: 105 SDDDLNDYFNTTADAAAKHKK-GSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQK 163
+ DD D+ + KHKK G + GL V I KKGF QPTPIQRKTIP I+
Sbjct: 2 ASDDEEDFTQLQINQNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDG 61
Query: 164 RDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGS 223
+D+V M+RTGSGKTAAFV+PM++KLK G+RA+++SP+RELA+QT +V KE + +
Sbjct: 62 KDVVAMSRTGSGKTAAFVIPMLQKLKRRDTT-GIRALMVSPTRELALQTFKVVKELGRFT 120
Query: 224 DLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF 283
LR L GGD +E+QF + NPD+++ATPGR LH+ VEM+L L V+YVVFDEADRLF
Sbjct: 121 GLRCACLVGGDQIEEQFSTIHENPDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLF 180
Query: 284 EMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEM 343
EMGFQ+QL E L P +RQTLLFSATLP LVDFAKAGL++P+LVRLD + K+S+ L M
Sbjct: 181 EMGFQDQLTETLKRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSM 240
Query: 344 LFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXX 403
+F + DE+ LL+L + E+ +KK K
Sbjct: 241 VFCMCRPDEKLFALLHLCRN-FCFKKLLETSLKKCK------------------------ 275
Query: 404 XXXRRLPNANEMPSE---KATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQ 460
+++P ++ + K T+VF T HVEYV +L G S++Y L+ ARK
Sbjct: 276 ISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMN 335
Query: 461 LYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
+ F +ILVVTDVAARGVDIPLL VIN P +K+F+HRVGR ARAG G A S
Sbjct: 336 IQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAIS 395
Query: 521 IVSXXXXXXXXXXXXXXGKKILLTPMYESSCQILRKKAESEGNNNFTDPKVSY-TTRMVL 579
+++ GK I NF K Y ++
Sbjct: 396 LIANDELPYLTDLFMFLGKPI-----------------------NFASDKSEYKEDETLI 432
Query: 580 GACPRSEIDGMGDLYSNMIKSDFELNTVKGVALKAEKLYFRTRTPASAESMKRSKEILRS 639
G P S + + + ++ ++ ++ ++ A A Y RTR P SAES +R K+ +R+
Sbjct: 433 GRVPDSIVSLETEFFHSIHDNNEDMQDLRQKATNAMMKYTRTRPPPSAESARRVKQDIRT 492
Query: 640 GWDE--QNIYFGKNAEKEKLDFLAKLQHRNNKETVFEFARNPDDEMSVLMKRRRRQIAP- 696
E + + + +K+ D L K+ ++ T+FE ++ + +M+ +R+ P
Sbjct: 493 DSVECAPHPFLKADGDKQSNDILNKISQYKSRNTIFEMNKSQKSQALAVMQAKRKAHEPR 552
Query: 697 ------IQRKAKERQELLEKERMIG-------LRHSIEDEILKGEDNEVGYSVPDEVLKE 743
+RK KE +E +K I + ++ EDE+ + +G + E +E
Sbjct: 553 ISTVTEEKRKQKEEKEQQQKSTDIAVEIAEKTVENAGEDELAEVFGTVIGSTKHTEKSEE 612
Query: 744 FEDADVLLEEQENIXXXXXXTFRDPTFYLSHFAPTSDIQDKQLQISS-GFTNDASNAAFD 802
+ + I F Y+ + + + + ++ L + + F A A+ D
Sbjct: 613 KGGKKRKIGTGKRIDRAEQMKFEREKHYVPYMS-SDHVAERHLALDTVDFARQAEGASVD 671
Query: 803 LANDDKVQVHKQTATVKWDKKRKKYVNTQGLDN--KKYIIGESGQKIPASFRSGKFQDWS 860
+ DD +++Q +WD++ KKYV G + K I E G +PAS+++GK++DW
Sbjct: 672 IIMDDDRGMYQQKHGQRWDRRLKKYVGLSGGNEPANKKIRTEDGTWLPASYKTGKYEDWK 731
Query: 861 KARKI 865
+ +KI
Sbjct: 732 QKQKI 736
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 404 bits (1037), Expect = e-112
Identities = 295/879 (33%), Positives = 441/879 (49%), Gaps = 100/879 (11%)
Query: 84 IVDSKFPSLELSDDEKKATNES------DDDLNDYFNTTADAAA--------KHKKGSFA 129
+V L+ +D KK +E D+D T+D A K+K G F
Sbjct: 44 LVQESEADLDFGEDRKKQADEIPGFPSLDNDAG-----TSDRGADILKSKSKKNKSGGFQ 98
Query: 130 SFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLK 189
S GL ++ I+K+G++ PTPIQRKTIPLIL+ RD+V MA+TGSGKTA F++P+ EKL+
Sbjct: 99 SMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQ 158
Query: 190 THSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDV 249
G RA+ILSP+RELA+QT++ KE + +L+SIL+ GGDS++ QF + PDV
Sbjct: 159 RREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDV 218
Query: 250 VIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSA 309
++ATPGRFLHL VEM+L L S+EYVVFDEADRLFEMGF EQLNE L P++RQT++FSA
Sbjct: 219 IVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSA 278
Query: 310 TLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPV 369
TLP LV+FA+AGL++PVL+RLD E+K+ + L + F+ + D+R L+ LL+ I
Sbjct: 279 TLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVI---- 334
Query: 370 ATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRH 429
P + T+VF T+H
Sbjct: 335 ----------------------------------------------PVQSQTVVFAGTQH 348
Query: 430 HVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLAN 489
HVE ++ +L G + +Y +L+ ARK F S+L+VTDVAARG+DIP L
Sbjct: 349 HVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGIDIPSLDF 408
Query: 490 VINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXXXXXGKKILLTPMYES 549
V+N PG K+F+HRVGR ARAG G A+SIVS + + S
Sbjct: 409 VVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFLNRPFNIHD--SS 466
Query: 550 SCQILRKKAESEGNNNFTDPKVSYTTRMVLGACPRSEIDGMGDLYSNMIKSDFELNTVKG 609
+ + + E + TD K S+ VL + + ++ + +K
Sbjct: 467 ALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKKYLSSRPVASTDANARVKKIKF 526
Query: 610 VALKAEKLYFRTRTPASAESMKRSKEILRSGWDEQNIYFGKNAEKEKLDFLAKLQHRNNK 669
ALK + +F T P A++ + S + S + + ++EK D L K++
Sbjct: 527 FALKPLEDFF-TAAPVLAQAAEASGQSTES--QAKVSAAERKLQEEKHDILVKMRSFRPG 583
Query: 670 ETVFEFARNPDDEMSVLMKRRRRQIAPIQRKAKER--QELLEKERMIGLRHSIEDEILKG 727
TVFE ++MK +R Q A + K +++ +E +++E+ + +
Sbjct: 584 GTVFELNTTQKSTQFIVMKEKRMQHAEVINKFRQQRAEEDIDEEKKTIEALNPSSGRMPT 643
Query: 728 EDNEVGYSVPDEVL--KEFEDADVLLEEQENIXXXXXXTFRDPTFYLSHFAPTSDIQDKQ 785
D E S ++V+ K ++ D L +++ +D Y+ + + +D
Sbjct: 644 ADEEAISSTFNKVVAPKRLQNMDALYKDKPK-KKKRKINSKDEDHYVPYQSADKHTED-G 701
Query: 786 LQISSGFTNDASNAAFDLANDDKVQ-VHKQTATVKWDKKRKKYVNTQGLDNKKYIIGESG 844
L I++ F A NA F +++ D Q V + KWD+ +KK V+ Q K I ESG
Sbjct: 702 LAINN-FERQAQNAEFSVSDRDLSQEVKHKPGLKKWDRIKKKMVSVQDPRANK-IRTESG 759
Query: 845 QKIPASFRSGKFQDWSKARKIAPLKVGARESTIPSNLLADPTSPSER-TVGGKFKH---- 899
IPASF++G++ +W + KI RE+ + A P S ++R V +H
Sbjct: 760 AWIPASFKTGRYAEWKEKSKIEDQL--QRENAGSDDENAKPLSHAQRYPVSRHARHNLKL 817
Query: 900 ----------KTQKAPKLPDKHRDDYAFQKKKVEAALER 928
K + P+ K R F KK+ E ER
Sbjct: 818 ELKKRLTGNDKEMRRPEQIVKSRMRLEFIKKRNEENAER 856
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 385 bits (988), Expect = e-106
Identities = 233/546 (42%), Positives = 317/546 (57%), Gaps = 60/546 (10%)
Query: 122 KHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFV 181
K K G F S L V I KKG++ PTPIQRKT+PLIL D+V MARTGSGKTAAF+
Sbjct: 24 KGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFL 83
Query: 182 LPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFG 241
+PM+EKLK H + GVRA+ILSP+R+LA QT + KE K +DLR LL GGDS+EDQF
Sbjct: 84 IPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFE 143
Query: 242 MMMGNPDVVIATPGRFLHLKVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT 300
+ PDV+IATPGR +HL E+ ++ L++VEYVVFDEAD LF MGF EQL+++L
Sbjct: 144 ELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSE 203
Query: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYL 360
NRQTLLFSATLPS+L +FAKAGL P LVRLD E KIS +L++ F++++ +E+ + LLYL
Sbjct: 204 NRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYL 263
Query: 361 LQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKA 420
++E I S++
Sbjct: 264 VREHIS--------------------------------------------------SDQQ 273
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
T++FV T+HHVE+V L K S YG ++Q ARK + FRA T +L+VTD+AAR
Sbjct: 274 TLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAAR 333
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXXXXXGKK 540
G+DIPLL NVIN+ P KIF+HRVGR ARAG G A+S V+ K
Sbjct: 334 GIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSKP 393
Query: 541 ILLTPMYESSCQILRKKAE-SEGNNNFTDPKVSYTTRMVLGACPRSEIDGMGDLYSNMIK 599
+ P + ++L+ E + D V+ V G P+ ID + + MI
Sbjct: 394 VRPAPTED---EVLKNMEEVMTKTSQAIDSGVT-----VYGRFPQKTIDLIFNRTREMID 445
Query: 600 SDFELNTVKGVALKAEKLYFRTRTPASAESMKRSKEILRSGWDEQNIYFGKNAEKEKLDF 659
S EL++++ + KA +LY +T+ S ES++R+K++ R G + E E + F
Sbjct: 446 SSAELDSLERTSTKAFRLYSKTKPSPSKESIRRAKDLPREGLHPIFRSIIETGELEAMSF 505
Query: 660 LAKLQH 665
K+++
Sbjct: 506 FQKIKN 511
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 238 bits (606), Expect = 4e-62
Identities = 154/433 (35%), Positives = 231/433 (52%), Gaps = 54/433 (12%)
Query: 96 DDEKKATNESDDDLNDYF--NTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQ 153
DDE ++S++ D++ T D A K +F S LS+ VL ++ G+ +P+PIQ
Sbjct: 199 DDEIDEEDDSEEAKADFYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQ 258
Query: 154 RKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIG-VRAVILSPSRELAIQT 212
TIP+ L +DI+ A TGSGKTAAF++P+IE+L AKI R ++L P+RELAIQ
Sbjct: 259 SATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQV 318
Query: 213 HRVFKEFSKG-SDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLKS 270
V K+ ++ S + L GG +L Q M+ PD+VIATPGRF+ H++ + ++ S
Sbjct: 319 ADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDS 378
Query: 271 VEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVR 330
VE +V DEADR+ E GFQ++LNE++ P+NRQ LLFSAT+ S + L PV +
Sbjct: 379 VEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIM 438
Query: 331 LDAETKISENLEMLFISI-KKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXX 389
+D K + L F+ I K+D + LL+ L I+KL
Sbjct: 439 IDPPKKAATKLTQEFVRIRKRDHLKPALLFNL-------------IRKL----------- 474
Query: 390 XXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIY 449
+ +K +VFV + + ++ G V ++
Sbjct: 475 ------------------------DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELH 510
Query: 450 GALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRT 509
G+L Q R + F+ +L+ TD+A+RG+DIP + VINY +P S +I++HRVGRT
Sbjct: 511 GSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRT 570
Query: 510 ARAGNRGWAFSIV 522
ARAG G + + V
Sbjct: 571 ARAGREGRSVTFV 583
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 228 bits (581), Expect = 3e-59
Identities = 147/442 (33%), Positives = 228/442 (51%), Gaps = 65/442 (14%)
Query: 93 ELSDDEKKATNESDDDLNDYFNTTADAAAKHKK--------GSFASFGLSKLVLINISKK 144
+ + D +++S++D + A A K+ SF S LS+ +L +S
Sbjct: 218 DFNSDSAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLSNL 277
Query: 145 GFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKI-GVRAVILS 203
GF PT IQ KTIPL L +DIVG A TGSGKTAAF++P++E+L K+ R +IL
Sbjct: 278 GFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILC 337
Query: 204 PSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKV 262
P+RELA+Q H V + + +D+ L GG SL+ Q + PD+VIATPGRF+ H++
Sbjct: 338 PTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRN 397
Query: 263 EMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAG 322
++++E +V DEADR+ E GF ++LNE++ A P +RQT+LFSAT+ + D +
Sbjct: 398 SQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLS 457
Query: 323 LSNPVLVRLDAETKISENLEMLFISIKKDE---REANLLYLLQEAIKMPVATESQIKKLK 379
L+ PV V +D + ++ L F+ ++ R A L+YL +E
Sbjct: 458 LNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELF-------------- 503
Query: 380 QQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLK 439
+ TI+F ++ + +
Sbjct: 504 --------------------------------------HRRTIIFFRSKAFAHKMRVIFG 525
Query: 440 NCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSS 499
+ I+G+L+Q R + L +FR G + L+ TDVA+RG+DI + VINY P +
Sbjct: 526 LLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATH 585
Query: 500 KIFIHRVGRTARAGNRGWAFSI 521
++++HRVGRTARAG G A ++
Sbjct: 586 EVYLHRVGRTARAGRSGRAITL 607
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 225 bits (573), Expect = 3e-58
Identities = 144/457 (31%), Positives = 227/457 (49%), Gaps = 60/457 (13%)
Query: 86 DSKFPSLELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKG 145
D K SL + +++E + N D+ +F G+ + K G
Sbjct: 11 DKKNSSLNKKIETSNSSSEKSSE-----NNNGDSQNNEAPKTFKELGVIDELCEACEKLG 65
Query: 146 FRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPS 205
F+ PTPIQ++ IP++L KRD++G+A+TGSGKTAAF LP+I++L + + AV+L+P+
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFF--AVVLAPT 123
Query: 206 RELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEM 264
RELA Q F+ +RS+++ GG + Q + P V++ TPGR + HL+
Sbjct: 124 RELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTK 183
Query: 265 NLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLS 324
LK+++Y++ DEADRL +M F ++++L P R+TLLFSAT+ S + +A L
Sbjct: 184 GFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLH 243
Query: 325 NPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXX 384
PV V + ++ + L ++ ++ L+YL+
Sbjct: 244 QPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLV----------------------- 280
Query: 385 XXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYL 444
NE+ + I+F T + + + LL+ G+
Sbjct: 281 ----------------------------NELAGN-SIIIFARTVNDTQRLAILLRTLGFS 311
Query: 445 VSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIH 504
++G L+Q R L F++G S LV TDVAARG+DIPL+ VINY +P SK +IH
Sbjct: 312 AIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
Query: 505 RVGRTARAGNRGWAFSIVSXXXXXXXXXXXXXXGKKI 541
RVGRTARAG G + ++V+ GKK+
Sbjct: 372 RVGRTARAGRAGKSIALVTQYDLEPFLRIEATIGKKM 408
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 213 bits (543), Expect = 9e-55
Identities = 148/442 (33%), Positives = 227/442 (50%), Gaps = 64/442 (14%)
Query: 87 SKFPSLELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGF 146
+K +L++ D +KK + + +F DA+ + SF LS+ +L I+ GF
Sbjct: 184 TKADTLKVKDRKKK--KKKGQEAGGFFE---DASQYDENLSFQDMNLSRPLLKAITAMGF 238
Query: 147 RQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL--KTHSAKIGVRAVILSP 204
+QPTPIQ+ IP+ L +DI A TG+GKTAAF LP++E+L K A + R ++L P
Sbjct: 239 KQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPV-TRVLVLVP 297
Query: 205 SRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVE 263
+REL IQ H V ++ ++ ++ + L GG ++ Q + PD++IATPGR + HL
Sbjct: 298 TRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNC 357
Query: 264 MNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGL 323
+ L S+E ++ DEADR+ + F+EQ+ E++ +RQT+LFSAT+ + D A L
Sbjct: 358 PSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSL 417
Query: 324 SNPVLVRLDAETKISENLEMLFISI---KKDEREANLLYLLQEAIKMPVATESQIKKLKQ 380
NPV + +++ T ++ L FI I ++ +REA + LL V +Q KK
Sbjct: 418 KNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAH 477
Query: 381 QNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKN 440
R H+ LL
Sbjct: 478 -----------------------------------------------RMHI-----LLGL 485
Query: 441 CGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSK 500
G V ++G L+Q R + L F+ ILV TDVAARG+DI + VIN+++P + K
Sbjct: 486 MGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIK 545
Query: 501 IFIHRVGRTARAGNRGWAFSIV 522
++HRVGRTARAG G + S+V
Sbjct: 546 HYVHRVGRTARAGRAGRSVSLV 567
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 210 bits (534), Expect = 1e-53
Identities = 131/432 (30%), Positives = 217/432 (49%), Gaps = 55/432 (12%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F G++ ++ + G+ +PT IQ + IPL LQ RDI+G+A TGSGKT AF LP++
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
L ++ A++L+P+RELA Q F+ ++S ++ GG Q +
Sbjct: 85 ALLETPQRLF--ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKK 142
Query: 247 PDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
P ++IATPGR + HL+ +L++++Y+V DEADR+ M F+ +++++L P +R+T
Sbjct: 143 PHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 202
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAI 365
LFSAT+ + +A L NPV + ++ + E L+ +I I ++ L+Y+L
Sbjct: 203 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL---- 258
Query: 366 KMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFV 425
NE+ + ++F
Sbjct: 259 -----------------------------------------------NELAGN-SFMIFC 270
Query: 426 PTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIP 485
T ++ + LL+N G+ ++G ++Q R L F+A SIL+ TDVA+RG+DIP
Sbjct: 271 STCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIP 330
Query: 486 LLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXXXXXGKKILLTP 545
+ V+N+ +P SK +IHRVGRTARAG G A + V+ GKK+ P
Sbjct: 331 HVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFP 390
Query: 546 MYESSCQILRKK 557
+ +L ++
Sbjct: 391 TQDDEVMMLTER 402
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 209 bits (533), Expect = 1e-53
Identities = 125/403 (31%), Positives = 208/403 (51%), Gaps = 57/403 (14%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
S+ G+S +L ++ K G+ +PTPIQ + IP I+ RD++G+A+TGSGKT AF+LPM
Sbjct: 373 SWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 432
Query: 187 KL---KTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMM 243
+ ++ G AVI++P+RELA+Q + K+FSK LR + + GG + +Q +
Sbjct: 433 HIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 492
Query: 244 MGNPDVVIATPGRFLHLKVEMN---LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT 300
++++ TPGR + + + +L+ V YVV DEADR+F+MGF+ Q+ ++
Sbjct: 493 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 552
Query: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYL 360
+RQT++FSAT P ++ A+ LS P+ V++ + + ++E I I E E L L
Sbjct: 553 DRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI---EEEKKFLKL 609
Query: 361 LQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKA 420
L +
Sbjct: 610 ------------------------------------------------LELLGHYQESGS 621
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
I+FV + H + + + L Y ++G ++Q+ R + +F+ G +LV T VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
G+D+ L V+NYS P + ++HR GRT RAGN+G+A++ ++
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFIT 724
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 206 bits (524), Expect = 1e-52
Identities = 155/454 (34%), Positives = 217/454 (47%), Gaps = 61/454 (13%)
Query: 95 SDDEKKATNESDDDLNDYFNTTADAAAKH--KKGSFASFGLSKLV--LINISKK-GFRQP 149
SD E+ AT E L +T ++ + SF SF LV LI K + +P
Sbjct: 87 SDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKP 146
Query: 150 TPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELA 209
TPIQ K IP L+ DI+G+A+TGSGKTAAF +P++ +L H + A IL+P+RELA
Sbjct: 147 TPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL-WHDQE-PYYACILAPTRELA 204
Query: 210 IQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDL 268
Q F +RS + GG ++ DQ +M P ++IATPGR + HL+ L
Sbjct: 205 QQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSL 264
Query: 269 KSVEYVVFDEADRLFEMGFQEQLNELLVAFPT-NRQTLLFSATLPSSLVDFAKAGLSNPV 327
+ ++++V DEADRL +M F L+ +L PT R T LFSAT+ S + +A L+NPV
Sbjct: 265 RKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPV 324
Query: 328 LVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXX 387
+ + + + L + + + L+YLL E I + ++ K
Sbjct: 325 KCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTK----------- 373
Query: 388 XXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSY 447
NA + + F T H
Sbjct: 374 ----------------------ANAERLSGLCNLLEFSATALH----------------- 394
Query: 448 IYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVG 507
G LNQ+ R L F+AG SILV TDVAARG+DIP + V+NY +P SK +IHRVG
Sbjct: 395 --GDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVG 452
Query: 508 RTARAGNRGWAFSIVSXXXXXXXXXXXXXXGKKI 541
RTARAG G + S+VS GKK+
Sbjct: 453 RTARAGRSGKSISLVSQYDLELILRIEEVLGKKL 486
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 206 bits (523), Expect = 2e-52
Identities = 136/471 (28%), Positives = 232/471 (48%), Gaps = 58/471 (12%)
Query: 91 SLELSDDEKKATNESDDDL---NDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFR 147
S E +DE E D + + + D AA+ +K ++ GL++ + + ++
Sbjct: 23 SEEEQEDEDNNHKEGDSEAALSGEDDKGSEDDAAEEQKLTWKDLGLNEALCQACDELKWK 82
Query: 148 QPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRE 207
P+ IQR+ IP+ LQ +D++G+A TGSGKT AF LP++ L + + A++L+P+RE
Sbjct: 83 APSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF--ALVLTPTRE 140
Query: 208 LAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNL 266
LA Q F+ G ++ ++ GG + Q + P ++IATPGR + HL+
Sbjct: 141 LAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGF 200
Query: 267 DLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNP 326
+LK+++Y+V DEADR+ M F+ +L+++L P R+T LFSAT+ + +A L +P
Sbjct: 201 NLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDP 260
Query: 327 VLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXX 386
V V + + + E L+ ++ I ++ L+++L
Sbjct: 261 VKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHIL------------------------- 295
Query: 387 XXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVS 446
NE+ + ++F T ++ +L+ G
Sbjct: 296 --------------------------NELAGN-SFMIFCSTCNNTVKTALMLRALGLAAI 328
Query: 447 YIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRV 506
++G ++Q+ R L F+A SIL+ TDVA+RG+DIP + V+N+ +P SK +IHRV
Sbjct: 329 PLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRV 388
Query: 507 GRTARAGNRGWAFSIVSXXXXXXXXXXXXXXGKKILLTPMYESSCQILRKK 557
GRTARAG G A ++VS GK++ L E L+++
Sbjct: 389 GRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQER 439
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 204 bits (519), Expect = 5e-52
Identities = 134/414 (32%), Positives = 203/414 (48%), Gaps = 75/414 (18%)
Query: 133 LSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE------ 186
L+ +L + + G+++P+PIQ IPL LQ+RD++G+A TGSGKTAAFVLPM+
Sbjct: 320 LTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLP 379
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
+ + G AV+++P+RELA Q +F+ R + GG S+E+Q +
Sbjct: 380 PMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQG 439
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTN----- 301
++VIATPGR + L YVV DEADR+ +MGF+ Q+ +L A P++
Sbjct: 440 CEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPE 499
Query: 302 ------------RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIK 349
R T +FSAT+P + A+ L NPV+V + K ++ + I +K
Sbjct: 500 NEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMK 559
Query: 350 KDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRL 409
+ E+ L LL E
Sbjct: 560 ESEKFFRLQKLLDEL--------------------------------------------- 574
Query: 410 PNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLT 469
EK IVFV T+ + + + + L GY V+ ++G +Q R+ L FRA
Sbjct: 575 -------GEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRY 627
Query: 470 SILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
++LV TDV RG+DIP +A+VINY +P +++ HR+GRT RAG G A S ++
Sbjct: 628 NVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLT 681
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 202 bits (513), Expect = 3e-51
Identities = 141/464 (30%), Positives = 220/464 (47%), Gaps = 91/464 (19%)
Query: 98 EKKATNESDDDLN----DYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQ 153
+KK +D D DY TT + S+ L +L I K G+++PTPIQ
Sbjct: 359 QKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQ 418
Query: 154 RKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKT-------HSAKIGVRAVILSPSR 206
R+ IP+ LQ RDI+G+A TGSGKTAAF++P++ + T + G A+IL+P+R
Sbjct: 419 RQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTR 478
Query: 207 ELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQ-FGMMMGNPDVVIATPGRFLHLKVEMN 265
ELA Q +F K +R++ + GG S EDQ F + MG ++VIATPGR + +
Sbjct: 479 ELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGRLIDVLENRY 537
Query: 266 LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTN------------------------ 301
L L YVV DEADR+ +MGF+ + ++L P +
Sbjct: 538 LVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKH 597
Query: 302 --RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLY 359
RQT++F+AT+P ++ A++ L P +V + + K E +E + + E+ LL
Sbjct: 598 KYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLA 657
Query: 360 LLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEK 419
+L++ P+
Sbjct: 658 ILEQGFDPPI-------------------------------------------------- 667
Query: 420 ATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAA 479
I+FV + + + + L+ GY ++G Q R+ L N +AG ILV TDVA
Sbjct: 668 --IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAG 725
Query: 480 RGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
RG+DI ++ V+NY + + + +IHR+GRT RAG G A + ++
Sbjct: 726 RGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLT 769
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 202 bits (513), Expect = 3e-51
Identities = 141/464 (30%), Positives = 220/464 (47%), Gaps = 91/464 (19%)
Query: 98 EKKATNESDDDLN----DYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQ 153
+KK +D D DY TT + S+ L +L I K G+++PTPIQ
Sbjct: 359 QKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQ 418
Query: 154 RKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKT-------HSAKIGVRAVILSPSR 206
R+ IP+ LQ RDI+G+A TGSGKTAAF++P++ + T + G A+IL+P+R
Sbjct: 419 RQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTR 478
Query: 207 ELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQ-FGMMMGNPDVVIATPGRFLHLKVEMN 265
ELA Q +F K +R++ + GG S EDQ F + MG ++VIATPGR + +
Sbjct: 479 ELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EIVIATPGRLIDVLENRY 537
Query: 266 LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTN------------------------ 301
L L YVV DEADR+ +MGF+ + ++L P +
Sbjct: 538 LVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKH 597
Query: 302 --RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLY 359
RQT++F+AT+P ++ A++ L P +V + + K E +E + + E+ LL
Sbjct: 598 KYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLA 657
Query: 360 LLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEK 419
+L++ P+
Sbjct: 658 ILEQGFDPPI-------------------------------------------------- 667
Query: 420 ATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAA 479
I+FV + + + + L+ GY ++G Q R+ L N +AG ILV TDVA
Sbjct: 668 --IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAG 725
Query: 480 RGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
RG+DI ++ V+NY + + + +IHR+GRT RAG G A + ++
Sbjct: 726 RGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLT 769
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 202 bits (513), Expect = 3e-51
Identities = 139/420 (33%), Positives = 212/420 (50%), Gaps = 73/420 (17%)
Query: 119 AAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTA 178
AA +H F G V+ N+++ G+ +PTP+Q+ +IP +L RD++ A+TGSGKTA
Sbjct: 120 AAIEH----FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTA 175
Query: 179 AFVLPMIEKL--------KTHSAKIGVR-----AVILSPSRELAIQTHRVFKEFSKGSDL 225
AF+LP+I+ + K + G R A++LSP+RELAIQ H+ +FS S++
Sbjct: 176 AFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNI 235
Query: 226 RSILLTGG-DSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE 284
++ +L GG ++ DQ + ++IATPGR + + + + L Y+V DEADR+ +
Sbjct: 236 QTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLD 295
Query: 285 MGFQEQLNELL---VAFPTNRQTLLFSATLPSSLVDFAKAGL-SNPVLVRLDAETKISEN 340
MGF+ Q+ +++ + T R T +FSAT P + AK L N + + + SEN
Sbjct: 296 MGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSEN 355
Query: 341 LEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXX 400
+E + + + E+ +NL+ +L
Sbjct: 356 IEQRLLWVNEMEKRSNLMEILM-------------------------------------- 377
Query: 401 XXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQ 460
NE SE +VFV T+ + L I+G L Q R++
Sbjct: 378 ------------NE-HSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERN 424
Query: 461 LYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
L FR+G ILV T VAARG+DIP + +VINY LPG S ++HR+GRT R GN G A S
Sbjct: 425 LELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATS 484
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 202 bits (513), Expect = 3e-51
Identities = 139/420 (33%), Positives = 212/420 (50%), Gaps = 73/420 (17%)
Query: 119 AAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTA 178
AA +H F G V+ N+++ G+ +PTP+Q+ +IP +L RD++ A+TGSGKTA
Sbjct: 117 AAIEH----FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTA 172
Query: 179 AFVLPMIEKL--------KTHSAKIGVR-----AVILSPSRELAIQTHRVFKEFSKGSDL 225
AF+LP+I+ + K + G R A++LSP+RELAIQ H+ +FS S++
Sbjct: 173 AFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNI 232
Query: 226 RSILLTGG-DSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE 284
++ +L GG ++ DQ + ++IATPGR + + + + L Y+V DEADR+ +
Sbjct: 233 QTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLD 292
Query: 285 MGFQEQLNELL---VAFPTNRQTLLFSATLPSSLVDFAKAGL-SNPVLVRLDAETKISEN 340
MGF+ Q+ +++ + T R T +FSAT P + AK L N + + + SEN
Sbjct: 293 MGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSEN 352
Query: 341 LEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXX 400
+E + + + E+ +NL+ +L
Sbjct: 353 IEQRLLWVNEMEKRSNLMEILM-------------------------------------- 374
Query: 401 XXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQ 460
NE SE +VFV T+ + L I+G L Q R++
Sbjct: 375 ------------NE-HSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERN 421
Query: 461 LYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
L FR+G ILV T VAARG+DIP + +VINY LPG S ++HR+GRT R GN G A S
Sbjct: 422 LELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATS 481
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 201 bits (510), Expect = 6e-51
Identities = 139/435 (31%), Positives = 213/435 (48%), Gaps = 58/435 (13%)
Query: 93 ELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPI 152
E +KKA E ++D + A + SF LS+ ++ I G+ PTPI
Sbjct: 124 ESKKKKKKAGEEDEEDEGEKMQFADTVEANEQITSFYQMNLSRPLMRAIGVLGYIYPTPI 183
Query: 153 QRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL--KTHSAKIGVRAVILSPSRELAI 210
Q TIP+ L RDI G A TG+GKTAA++LP +E+L + + K R ++L P+REL
Sbjct: 184 QASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGA 243
Query: 211 QTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLK 269
Q ++V K+ + + + L GG ++ Q ++ NPD+VIATPGR + H+K + L
Sbjct: 244 QVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLD 303
Query: 270 SVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLV 329
S+E ++ DEADR+ + F EQ+ E++ + RQT+LFSAT+ + D A L P+ V
Sbjct: 304 SIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKV 363
Query: 330 RLDAETKISENLEMLFISIKKD---EREANLLYLLQEAIKMPVATESQIKKLKQQNXXXX 386
++ +++ NL FI I++D +RE L L+ Q KK
Sbjct: 364 FVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTKK--------- 414
Query: 387 XXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVS 446
H + + LL G
Sbjct: 415 ----------------------------------------QAHRLHILLGLL---GVRAG 431
Query: 447 YIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRV 506
++G L Q R + L F+ +L+ TDVAARG+DI + VIN+ +P +++ +IHRV
Sbjct: 432 ELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRV 491
Query: 507 GRTARAGNRGWAFSI 521
GRTARAG G + S+
Sbjct: 492 GRTARAGRAGISVSL 506
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 200 bits (508), Expect = 1e-50
Identities = 132/404 (32%), Positives = 208/404 (50%), Gaps = 60/404 (14%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMI- 185
+F G S ++ I K+ + +PT IQ + +P++L RD++G+A+TGSGKTAAFVLPMI
Sbjct: 229 TFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIV 288
Query: 186 -----EKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQF 240
+L+ IGV I +P+RELA Q K+FSK LR + GG S +QF
Sbjct: 289 HIMDQPELQRDEGPIGV---ICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQF 345
Query: 241 GMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT 300
+ ++V+ATPGR + + L + Y+V DEADR+F++GF+ Q+ ++
Sbjct: 346 KELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRP 405
Query: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYL 360
+RQTLLFSAT+P + A+ LS+P+ V + +E++ + I D
Sbjct: 406 DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSD--------- 456
Query: 361 LQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKA 420
A K+P E +LP M E
Sbjct: 457 ---AEKLPWLLE-----------------------------------KLPG---MIDEGD 475
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
+VF + V+ + L + V+ ++G +Q +R + L F++G+ +L+ TDVAAR
Sbjct: 476 VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAAR 535
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNR-GWAFSIVS 523
G+DI L V+NY + + +HR+GRT RAG+R G A+++V+
Sbjct: 536 GLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVT 579
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 199 bits (506), Expect = 2e-50
Identities = 133/449 (29%), Positives = 215/449 (47%), Gaps = 69/449 (15%)
Query: 124 KKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLP 183
K+ SFA G+S+ + + G+ +P+ IQ+ +P LQ +D++G+A TGSGKT AF +P
Sbjct: 42 KEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIP 101
Query: 184 MIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMM 243
+++ L H ++L+P+RELA Q + F+ G L + ++ GG + Q +
Sbjct: 102 VLQSLLDHPQAFF--CLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMAL 159
Query: 244 MGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNR 302
P +++ATPGR + HL+ +LK++++++ DEADR+ M F+ +L+++L P R
Sbjct: 160 ARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRER 219
Query: 303 QTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQ 362
+T LFSAT+ + +A L +P V + + K +NL+ +I + +E L+YLL
Sbjct: 220 RTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLN 279
Query: 363 E-------AIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEM 415
E AT QI + +Q + +P +M
Sbjct: 280 EHAGNSAIVFCATCATTMQIAVMLRQ----------------------LGMQAVPLHGQM 317
Query: 416 PSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVT 475
EK G+LN+ K + ILV T
Sbjct: 318 SQEKR----------------------------LGSLNKFKSKAR---------EILVCT 340
Query: 476 DVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXXX 535
DVAARG+DIP + VINY +P SK ++HRVGRTARAG G A ++V+
Sbjct: 341 DVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEA 400
Query: 536 XXGKKILLTPMYESSCQILRKKAESEGNN 564
GKK+ E+ +L ++ + N
Sbjct: 401 NLGKKLDEYKCVENEVMVLVERTQEATEN 429
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 197 bits (502), Expect = 5e-50
Identities = 145/455 (31%), Positives = 214/455 (46%), Gaps = 77/455 (16%)
Query: 96 DDEKKATNESDDDLNDYFNTTADAAAKHKKG--SFASFGLSKLVLINISKKGFRQPTPIQ 153
+ K ++ + D+F+ D + SF LS+ +L S G+ PTPIQ
Sbjct: 116 EKRKSGKSKKSQENEDFFSALIDGKSLDTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQ 175
Query: 154 RKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIG-VRAVILSPSRELAIQT 212
+ IP+ L +DI A TG+GKTAAFVLP++E++ R ++L P+RELAIQ
Sbjct: 176 QACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQV 235
Query: 213 HRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLKSV 271
+VF++ S L L GG L+ Q + PDVV+ATPGR + HL + +L ++
Sbjct: 236 FQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNI 295
Query: 272 EY------------------------VVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLF 307
E +V DEADR+ E F++Q+NEL+ NRQTLLF
Sbjct: 296 EVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLF 355
Query: 308 SATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKM 367
SAT+ + + A L PV + ++ T + L FI I+ RE + +EA+
Sbjct: 356 SATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAG-RETD-----REAMVA 409
Query: 368 PVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPT 427
+ T + + TIVFV T
Sbjct: 410 ALVTRT-------------------------------------------FQTNTIVFVRT 426
Query: 428 RHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLL 487
+ + + LL G V + +L Q R + L F+ +LV TD+A+RG+DI +
Sbjct: 427 KKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGV 486
Query: 488 ANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
VIN ++P S K +IHRVGRTARAG G + S+V
Sbjct: 487 QTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLV 521
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 197 bits (501), Expect = 7e-50
Identities = 139/447 (31%), Positives = 214/447 (47%), Gaps = 66/447 (14%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+FA G+ + ++ + G++ P+ IQ + +P L+ +D++G+A+TGSGKT AF +P+++
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 187 KLKTH----SAKIGVR------AVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSL 236
L + K G R A +LSP+RELAIQ F+ LR +L GG
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129
Query: 237 EDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL 295
Q + P V ATPGR H+ LKS++Y+V DEADRL F++ LN++L
Sbjct: 130 MQQTIALGKRPHV--ATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 187
Query: 296 VAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREA 355
P R+T LFSAT+ + +A L NPV + ++ + L+ + + ++
Sbjct: 188 EEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDC 247
Query: 356 NLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEM 415
L+Y+L E MP
Sbjct: 248 YLVYILSE---MP----------------------------------------------- 257
Query: 416 PSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVT 475
E +++F T ++ +L++ G+ I G + Q R L F+AG +ILV T
Sbjct: 258 --ESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCT 315
Query: 476 DVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXXX 535
DVA+RG+DIP + VINY +P +SK +IHRVGRTARAG G S+V+
Sbjct: 316 DVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEK 375
Query: 536 XXGKKILLTPMYESS-CQILRKKAESE 561
GKK+ P E +L + AE++
Sbjct: 376 LIGKKLPEYPAEEDEVLSLLERVAEAK 402
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 196 bits (497), Expect = 2e-49
Identities = 122/403 (30%), Positives = 201/403 (49%), Gaps = 54/403 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
S++ GLS + I+ G+ +PT IQ + IP I RD++G+A+TGSGKT AF+LPM
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 187 KLKTH---SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMM 243
+K G A+I++P+RELA+Q R K F K ++R+ GG ++DQ +
Sbjct: 479 HIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADL 538
Query: 244 MGNPDVVIATPGRF---LHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT 300
++V+ TPGR L +L Y+V DEADR+F++GF+ Q+ ++
Sbjct: 539 KRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRP 598
Query: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYL 360
+RQT+LFSAT P ++ A+ L PV + + + ++ +E + ++ + + LL L
Sbjct: 599 DRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLEL 658
Query: 361 LQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKA 420
L E N++ +
Sbjct: 659 LGELYN----------------------------------------------NQL--DVR 670
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
T+VFV + + + L GY + I+G +QH R + +++AG+ +L+ T V AR
Sbjct: 671 TLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVAR 730
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
G+D+ L V+NY P + ++HRVGRT RAG+ G A + ++
Sbjct: 731 GLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFIT 773
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 195 bits (496), Expect = 3e-49
Identities = 133/458 (29%), Positives = 217/458 (47%), Gaps = 56/458 (12%)
Query: 88 KFPSLELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFR 147
K P ++ +K ++ + + F ++ +F GL++ + + G R
Sbjct: 20 KNPKTVVNIQSQKLDSDQNTPQFEKFTNPNPSSDTTSATNFEGLGLAEWAVETCKELGMR 79
Query: 148 QPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRE 207
+PTP+Q +P IL RD++G+A+TGSGKTAAF LP++ +L GV A++++P+RE
Sbjct: 80 KPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVFALVVTPTRE 137
Query: 208 LAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLD 267
LA Q FK +LR ++ GG + Q ++ P +VI TPGR + + +E N D
Sbjct: 138 LAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGR-IKVLLENNPD 196
Query: 268 LKSV----EYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGL 323
+ V +++V DEADR+ ++GFQ++L + P +RQTLLFSAT+ S+L +
Sbjct: 197 VPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEHSS 256
Query: 324 SNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNX 383
+ K + L FI KD +E L+++L +
Sbjct: 257 NKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQM------------------- 297
Query: 384 XXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGY 443
E ++ ++FV T + ++ +L
Sbjct: 298 ------------------------------EDKGIRSAMIFVSTCRTCQRLSLMLDELEV 327
Query: 444 LVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFI 503
++ +Q R L F++G IL+ TDVA+RG+DIP + VINY +P + ++
Sbjct: 328 ENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYV 387
Query: 504 HRVGRTARAGNRGWAFSIVSXXXXXXXXXXXXXXGKKI 541
HRVGRTARAG G A SI++ GKK+
Sbjct: 388 HRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKM 425
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 194 bits (493), Expect = 6e-49
Identities = 122/411 (29%), Positives = 208/411 (49%), Gaps = 62/411 (15%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF L++++ N++ + +PTP+Q+ IP+I+ RD++ A+TGSGKTAAF++P++
Sbjct: 296 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 355
Query: 187 KL-------------KTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGG 233
++ + K ++L+P+RELA Q K+F+ S +R +L GG
Sbjct: 356 QMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 415
Query: 234 DSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNE 293
++ +Q + +++ATPGR + + L+++ ++V DEADR+ +MGF+ Q+
Sbjct: 416 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 475
Query: 294 LLVAF---PT-NRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIK 349
++ PT RQTL+FSAT P + + A LSN + + + SEN+ + +
Sbjct: 476 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVY 535
Query: 350 KDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRL 409
+ ++ + LL LL +
Sbjct: 536 EPDKRSYLLDLLSS---------------------------------------------I 550
Query: 410 PNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLT 469
+ E + T++FV T+ + + + L C + V+ I+G Q R++ L FR+G
Sbjct: 551 RDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDC 610
Query: 470 SILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
ILV T VAARG+DIP + +VIN+ LP + ++HR+GRT R GN G A S
Sbjct: 611 PILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATS 661
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 193 bits (491), Expect = 1e-48
Identities = 112/396 (28%), Positives = 201/396 (50%), Gaps = 53/396 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F GL + +L I GF +P+ IQ++ +P IL+ RD++ A++G+GKTA F + +++
Sbjct: 27 TFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQ 86
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
L T + +A+ILSP+RELA+Q +V +++ GG +L + +
Sbjct: 87 SLDTQVRE--TQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYG 144
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
VV TPGR + NL ++++ +V DEAD + GF+EQL ++ P Q +L
Sbjct: 145 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SATLP +++ +++P+ + + + E ++ F+++ ++E + + L L + +
Sbjct: 205 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLT 264
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ A ++F
Sbjct: 265 ITQA---------------------------------------------------VLFCN 273
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
TR V+++T +K + VS ++G + Q R + + FRAG T +L+ TDV ARG+D+P
Sbjct: 274 TRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQ 333
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
++ VINY LP + +++IHR+GR+ R G +G A + V
Sbjct: 334 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 193 bits (490), Expect = 1e-48
Identities = 126/411 (30%), Positives = 200/411 (48%), Gaps = 71/411 (17%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F S L+ +L NI G+ QPTP+Q+ +IP++ RD++ A+TGSGKTA F+ P++
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 188 L---------KTHSAKIGVR-------AVILSPSRELAIQTHRVFKEFSKGSDLRSILLT 231
A +G R +IL+P+REL Q H ++F S +R +
Sbjct: 231 AFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVY 290
Query: 232 GGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQL 291
GG + Q + D++ ATPGR + L + L +++++V DEADR+ +MGF+ Q+
Sbjct: 291 GGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQI 350
Query: 292 NELL----VAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFIS 347
++ + RQTL+FSAT P + A+ L + V + + SEN+ +
Sbjct: 351 RHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVH 410
Query: 348 IKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXR 407
++ E+ + LL +L
Sbjct: 411 VEDSEKRSYLLDIL---------------------------------------------- 424
Query: 408 RLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAG 467
+ +P E T++FV T+ + +T L N + + I+G Q R++ L FR+G
Sbjct: 425 -----HTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSG 479
Query: 468 LTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWA 518
TSI+V T VA+RG+DIP + +VINY LP ++HR+GRT RAGN G A
Sbjct: 480 RTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQA 530
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 193 bits (490), Expect = 1e-48
Identities = 121/406 (29%), Positives = 206/406 (49%), Gaps = 63/406 (15%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
++A G+SK + + + GF +PTPIQ + IP I+ RD++G+A+TGSGKT AF+LPM
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 187 KLKTHSAK---IGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMM 243
+ + G A+I++P+REL +Q + ++FSK LR + + GG + +Q +
Sbjct: 571 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 630
Query: 244 MGNPDVVIATPGRFLHLKVEMN---LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT 300
++++ TPGR + + + +L+ V YVV DEADR+F+MGF+ Q+ ++
Sbjct: 631 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRP 690
Query: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYL 360
+RQT++FSAT P + A+ L P+ V + + + + +E + + D + LL L
Sbjct: 691 DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLEL 750
Query: 361 L---QEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPS 417
L QEA + V + Q
Sbjct: 751 LGIYQEAGSIIVFVDKQ------------------------------------------- 767
Query: 418 EKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDV 477
E A I+ + L+K Y ++G ++Q R + +F++G +L+ T V
Sbjct: 768 ENADIL----------LRDLMK-ASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSV 816
Query: 478 AARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
AARG+D+ L V+NY +P + ++HR GRT RAG +G A++ ++
Sbjct: 817 AARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFIT 862
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 192 bits (489), Expect = 2e-48
Identities = 126/409 (30%), Positives = 195/409 (46%), Gaps = 65/409 (15%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMI- 185
SF +L + KKG PTPIQ + IP IL RD++G+A TGSGKT F LP+I
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
Query: 186 -----EKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSK------GSDLRSILLTGGD 234
EK S + G +I+ PSRELA QTH + + + + LR L GG
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301
Query: 235 SLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNEL 294
S+++Q + +++ATPGR + L + + L Y+ DEADR+ +MGF+ + +
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361
Query: 295 LVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDERE 354
F RQTLLFSAT+P + +FAK+ L PV + + S + + ++ + E
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLD---VIQEVEYVKEE 418
Query: 355 ANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANE 414
A ++YLL+ K P
Sbjct: 419 AKMVYLLECLQKTP---------------------------------------------- 432
Query: 415 MPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVV 474
++F + V+ + + L G I+G +Q R + + FR G +LV
Sbjct: 433 ----PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 488
Query: 475 TDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
TDVA++G+D P + +VINY +P + ++HR+GRT R+GN G A + ++
Sbjct: 489 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 192 bits (488), Expect = 2e-48
Identities = 127/404 (31%), Positives = 202/404 (49%), Gaps = 57/404 (14%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+FA L + + +NI + + +PTP+QR IP++ RD++ A+TGSGKTAAF P+I
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206
Query: 187 KLKTHS---AKIGVR-----AVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLED 238
+ GVR AVILSP+RELA Q H ++FS + ++ ++ GG +
Sbjct: 207 GIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQ 266
Query: 239 QFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAF 298
Q + D+++ATPGR L + L+ V ++ DEADR+ +MGF+ Q+ +++
Sbjct: 267 QIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQM 326
Query: 299 ----PTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDERE 354
P RQT+LFSAT P + A LSN + + + ++ + + ++
Sbjct: 327 DMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKR 386
Query: 355 ANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANE 414
++L+ LL + N N+
Sbjct: 387 SHLMDLLH--------------------------------------------AQRENGNQ 402
Query: 415 MPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVV 474
+ T+VFV T+ + + L G+ + I+G +Q R+ L +F+ G T ILV
Sbjct: 403 -GKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVA 461
Query: 475 TDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWA 518
TDVAARG+DIP +A+V+N+ LP ++HR+GRT RAGN G A
Sbjct: 462 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLA 505
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 192 bits (488), Expect = 2e-48
Identities = 128/397 (32%), Positives = 198/397 (49%), Gaps = 51/397 (12%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F G V+ I K+GF +PT IQ + P+ + RD+VG+A+TGSGKT A+VLP +
Sbjct: 152 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 211
Query: 188 LKTH---SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMM 244
+ G A++L+P+RELA Q +V EF + +R+ + GG Q +
Sbjct: 212 INNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLE 271
Query: 245 GNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQT 304
++VIATPGR + LK Y+V DEADR+ +MGF+ Q+ +++ +RQ
Sbjct: 272 RGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQV 331
Query: 305 LLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEA 364
L++SAT P + A+ L+N + V + +S N +L I DE E L +
Sbjct: 332 LMWSATWPKEVRQLAEEFLNNYIQVNI-GSLSLSANHNILQIVDVCDENEK-----LMKL 385
Query: 365 IKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVF 424
IK+ ++ +E TI+F
Sbjct: 386 IKLLTDISAE------------------------------------------NETKTIIF 403
Query: 425 VPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDI 484
V T+ V+ +T+ + G+ I+G +Q R L +FR G SILV TDVAARG+D+
Sbjct: 404 VETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDV 463
Query: 485 PLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSI 521
+ VINY P +S+ ++HR+GRT R+ N G A+++
Sbjct: 464 DDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTL 500
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 192 bits (487), Expect = 3e-48
Identities = 126/409 (30%), Positives = 207/409 (49%), Gaps = 65/409 (15%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMI- 185
+F + VL + +KG QPTPIQ + +P+IL RD++G+A TGSGKT FVLPMI
Sbjct: 147 NFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206
Query: 186 -----EKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEF------SKGSDLRSILLTGGD 234
E + +A G +I+ PSRELA QT+ V ++F + LRS+L GG
Sbjct: 207 IALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGI 266
Query: 235 SLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNEL 294
+ Q ++ +V+ATPGR + + + L + Y+ DEADRL ++GF++ + E+
Sbjct: 267 DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREV 326
Query: 295 LVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDERE 354
F + RQTLLFSAT+P+ + FA++ L PV V + + NL+++ ++ ++E
Sbjct: 327 FDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAG--AANLDVIQ-EVEYVKQE 383
Query: 355 ANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANE 414
A ++Y L E ++
Sbjct: 384 AKIVY-LLECLQK----------------------------------------------- 395
Query: 415 MPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVV 474
+ ++F + V+ + + L G I+G +Q R+ + +F+AG +LV
Sbjct: 396 --TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVA 453
Query: 475 TDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
TDVA++G+D P + +VINY +P + ++HR+GRT R G G A + ++
Sbjct: 454 TDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 502
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 191 bits (486), Expect = 4e-48
Identities = 135/429 (31%), Positives = 208/429 (48%), Gaps = 59/429 (13%)
Query: 102 TNESDDDLNDYFNTTADAA------AKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRK 155
T+ D+++YF A A SF L + ISK F +PTPIQ
Sbjct: 84 TSLPQSDIDEYFKENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISK--FPKPTPIQAV 141
Query: 156 TIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRV 215
P +L +D+VG+A TGSGKT AF +P I L K G++ +++SP+RELA Q +
Sbjct: 142 AWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDN 201
Query: 216 FKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVV 275
+ ++ + GG ++Q + + VV+ATPGR L L E ++DL V Y+V
Sbjct: 202 LIVLTDKVGMQCCCVYGGVPKDEQ-RIQLKKSQVVVATPGRLLDLLQEGSVDLSQVNYLV 260
Query: 276 FDEADRLFEMGFQEQLNELL-VAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAE 334
DEADR+ E GF+E + ++ + RQTL+F+AT P + + A ++NP+ V +
Sbjct: 261 LDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNT 320
Query: 335 TKISENLEMLFISIKKDER--EANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXX 392
+++ N + I D R E LL LL++ P E
Sbjct: 321 DQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEK------------------- 361
Query: 393 XXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGAL 452
++F + V + LK GY V+ I+G L
Sbjct: 362 ----------------------------VLIFALYKKEAARVERNLKYNGYNVAAIHGDL 393
Query: 453 NQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARA 512
+Q R Q L F++G +++L+ TDVAARG+DIP + VIN + P + + ++HR+GRT RA
Sbjct: 394 SQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRA 453
Query: 513 GNRGWAFSI 521
G G A ++
Sbjct: 454 GQTGTAHTL 462
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 191 bits (485), Expect = 5e-48
Identities = 128/431 (29%), Positives = 213/431 (48%), Gaps = 72/431 (16%)
Query: 108 DLNDYFNTTADAAAKHKKG---SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKR 164
+ ++Y + DA+ K F S L L+L NI F +PTP+Q+ ++P++ R
Sbjct: 121 NFDNYDDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGR 180
Query: 165 DIVGMARTGSGKTAAFVLPMI-EKLKT------------HSAKIGVRAVILSPSRELAIQ 211
D++ A+TGSGKT F+ P++ E KT + K AVI++P+RELA Q
Sbjct: 181 DLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQ 240
Query: 212 THRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSV 271
K+F+ S +++ ++ GG + +Q + D+++ATPGR L + L +V
Sbjct: 241 IFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANV 300
Query: 272 EYVVFDEADRLFEMGFQEQLNELL----VAFPTNRQTLLFSATLPSSLVDFAKAGLSNPV 327
+Y+V DEADR+ +MGF+ Q+ ++ + RQTL+FSAT P+ + A+ LS+ +
Sbjct: 301 KYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYI 360
Query: 328 LVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXX 387
+ + SEN+ + ++ ++++ LL LL +
Sbjct: 361 FLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSAS----------------------- 397
Query: 388 XXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSY 447
++ T++FV T+ + +T L + +
Sbjct: 398 -----------------------------TDGLTLIFVETKRMADQLTDFLIMQNFRATA 428
Query: 448 IYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVG 507
I+G Q R++ L FR+G ++LV T VAARG+DIP + +VINY LP ++HR+G
Sbjct: 429 IHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIG 488
Query: 508 RTARAGNRGWA 518
RT RAGN G A
Sbjct: 489 RTGRAGNTGLA 499
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 190 bits (482), Expect = 1e-47
Identities = 120/414 (28%), Positives = 206/414 (48%), Gaps = 71/414 (17%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF+ + ++++ NI + +PTP+Q+ IP+I +KRD++ A+TGSGKTAAF+LP++
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 187 KLKTHSAKIGVRAV----------------ILSPSRELAIQTHRVFKEFSKGSDLRSILL 230
++ + +RA+ +L+P+RELA+Q + ++FS S +R ++
Sbjct: 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300
Query: 231 TGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQ 290
GG + Q + +++ATPGR + + + L +Y+V DEADR+ +MGF+ Q
Sbjct: 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360
Query: 291 LNELLV--AFPTN--RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFI 346
+ ++ P R T++FSAT P + A+ L + + + SEN+ +
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420
Query: 347 SIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXX 406
+++ ++ + LL LL
Sbjct: 421 WVEESDKRSFLLDLL--------------------------------------------- 435
Query: 407 RRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRA 466
N + T+VFV T+ + + L + GY + I+G +Q R++ L+ FR+
Sbjct: 436 ------NATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 489
Query: 467 GLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
G + ILV T VAARG+DI + +VIN+ LP + ++HR+GRT R GN G A S
Sbjct: 490 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 543
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 189 bits (481), Expect = 1e-47
Identities = 118/397 (29%), Positives = 193/397 (47%), Gaps = 53/397 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF G VL + K GF +PTPIQ + P+ ++ RD++G+A TGSGKT +++LP I
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159
Query: 187 KLKTHSAKI---GVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMM 243
+ G ++L+P+RELA+Q + +F S +++ + GG Q +
Sbjct: 160 HVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDL 219
Query: 244 MGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQ 303
++VIATPGR + + N +L+ V Y+V DEADR+ +MGF Q+ +++ +RQ
Sbjct: 220 QKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQ 279
Query: 304 TLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQE 363
TL +SAT P + +K L NP V + + + + + + ++ N L L E
Sbjct: 280 TLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLE 339
Query: 364 AIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIV 423
++ +V
Sbjct: 340 --------------------------------------------------DIMDGSRILV 349
Query: 424 FVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVD 483
F+ T+ + +T+ L+ G+ I+G +Q R L FR+G + I+ TDVAARG+D
Sbjct: 350 FLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLD 409
Query: 484 IPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
+ + VINY PGS + ++HR+GRT RAG +G A++
Sbjct: 410 VKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 446
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 189 bits (481), Expect = 1e-47
Identities = 133/470 (28%), Positives = 215/470 (45%), Gaps = 86/470 (18%)
Query: 88 KFPSLELSDDEKKATNESDDDL--NDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKG 145
K+ S+ E E D + DY T + S+ G K ++ I K G
Sbjct: 354 KWDDRHWSEKENDEMTERDWRIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVG 413
Query: 146 FRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKT-------HSAKIGVR 198
+++PTPIQR+ IP+ LQ RDI+G+A TGSGKT AF++P++ +++ G
Sbjct: 414 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPY 473
Query: 199 AVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL 258
A+I++P+RELA Q +F + +R++++ GG S E+Q + ++VIATPGR +
Sbjct: 474 AIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLI 533
Query: 259 HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTN----------------- 301
+ L L Y+V DEADR+ +MGF+ + ++L P
Sbjct: 534 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLME 593
Query: 302 --------RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDER 353
RQT++F+AT+P ++ A+ L P V + + K +E E + + ++++
Sbjct: 594 NFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGENDK 653
Query: 354 EANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNAN 413
L+ +L I PV
Sbjct: 654 RKKLMEILSRKIDPPV-------------------------------------------- 669
Query: 414 EMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILV 473
I+FV + + + + L+ GY ++G Q R+ L ++G ILV
Sbjct: 670 --------IIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILV 721
Query: 474 VTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
TDVA RG+DI ++ VINY + + + + HR+GRT RAG G A S VS
Sbjct: 722 ATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISPVS 771
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 189 bits (479), Expect = 2e-47
Identities = 116/406 (28%), Positives = 222/406 (54%), Gaps = 44/406 (10%)
Query: 128 FASFGLSKLVLINISKK-GFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
++ GLS ++ I++K F TPIQ + +P I+ RD++G+++TGSGKT +++LP++
Sbjct: 257 WSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLR 316
Query: 187 KLKTHSA----KIGVRAVILSPSRELAIQTHRVFKEFSKG-SDLRSILLTGGDSLEDQFG 241
++K + G +IL+P+RELA+Q H +F++ + +RS+ TGG ++ Q
Sbjct: 317 QVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQIT 376
Query: 242 MMMGNPDVVIATPGRFLHLKVEMN----LDLKSVEYVVFDEADRLFEMGFQEQLNELLVA 297
+ ++V+ATPGRF+ + + +N L K + +VV DEADRLF++GF+ Q+ +++
Sbjct: 377 DLKRGTEIVVATPGRFIDI-LTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKT 435
Query: 298 FPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLF-ISIKKDEREAN 356
++Q +LFSAT P+ L FA L +P+ + ++++ ++EN++ F I +DE+ N
Sbjct: 436 VRPDKQCVLFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDN 495
Query: 357 LLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMP 416
L+ L+ E + +++ +N + E+
Sbjct: 496 LVQLIHERSEF-------FDEVQSENDGQSS-----------------------DVEEVD 525
Query: 417 SEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTD 476
++ I+FV +++ +++++ L N G + I+ R L F+ SIL+ T+
Sbjct: 526 AK--AIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTE 583
Query: 477 VAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
V +RG+++P ++ VI Y+ + ++H GRTAR G A +++
Sbjct: 584 VLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLL 629
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 188 bits (478), Expect = 3e-47
Identities = 115/398 (28%), Positives = 199/398 (49%), Gaps = 53/398 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F G VL + + GF PTPIQ++ P+ + RD+VG++ TGSGKT ++ LP I
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 187 KLKTH---SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMM 243
+ S G ++L+P+RELA+Q + +F K S +R+ + GG Q +
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
Query: 244 MGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQ 303
+ ++ IATPGR L + +L+ V Y+V DEADR+ +MGF+ Q+ +++ +RQ
Sbjct: 243 IRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 302
Query: 304 TLLFSATLPSSLVDFAKAGLSNPVLVRLDA-ETKISENLEMLFISIKKDEREANLLYLLQ 362
T++FSAT P + A+ L++ + V + + + S N++ + + ++ A L ++
Sbjct: 303 TVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIE 362
Query: 363 EAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATI 422
E +K + +
Sbjct: 363 EVLK-------------------------------------------------DRDNKVL 373
Query: 423 VFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGV 482
+F T+ + +T+ L+ G+ I+G Q R L FR G + I+V TDVA+RG+
Sbjct: 374 IFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGI 433
Query: 483 DIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
D+ + +V NY PG+++ ++HR+GRT RAG +G A++
Sbjct: 434 DVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYT 471
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 187 bits (475), Expect = 7e-47
Identities = 135/436 (30%), Positives = 214/436 (48%), Gaps = 60/436 (13%)
Query: 93 ELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPI 152
++ ++E+K E+ +D D N +F S LS+ I I + GF+ T I
Sbjct: 58 KIEEEEEKV--EAMEDGEDEKNIVIVGKGIMTNVTFDSLDLSEQTSIAIKEMGFQYMTQI 115
Query: 153 QRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL--KTHSAKIGVRAVILSPSRELAI 210
Q +I +L+ +D++G ARTGSGKT AF++P +E L + S + G +++ P+RELAI
Sbjct: 116 QAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAI 175
Query: 211 QTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLK 269
QT V +E K ++ GG++ + + ++VIATPGR L HL+ K
Sbjct: 176 QTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYK 235
Query: 270 SVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLV 329
++ +V DEADR+ E F+E +N++L P RQT LFSAT S + D A+ L++PV V
Sbjct: 236 HLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHV 295
Query: 330 RLDAETK--ISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXX 387
+D + +E LE + + +R L+ L++ +
Sbjct: 296 DVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNL---------------------- 333
Query: 388 XXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSY 447
K +VF T V++ T+++K VS
Sbjct: 334 ------------------------------NKKIMVFFSTCKSVQFHTEIMKISDVDVSD 363
Query: 448 IYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVG 507
I+G ++Q+ R + ++F IL+ TDVAARG+DIP + +I Y P +IHRVG
Sbjct: 364 IHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVG 423
Query: 508 RTARA-GNRGWAFSIV 522
RTAR G +G A ++
Sbjct: 424 RTARGEGAKGKALLVL 439
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 187 bits (475), Expect = 7e-47
Identities = 123/404 (30%), Positives = 202/404 (49%), Gaps = 57/404 (14%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+FA L + + +NI + + +PTP+QR IP++L+ RD++ A+TGSGKTAAF P+I
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219
Query: 187 KLKTH--------SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLED 238
+ S + AVILSP+RELA Q H K+FS + ++ ++ GG +
Sbjct: 220 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQ 279
Query: 239 QFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL--V 296
Q + D+++ATPGR L + ++ + ++ DEADR+ +MGF+ Q+ +++ +
Sbjct: 280 QLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 339
Query: 297 AFPTN--RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDERE 354
P RQTLLFSAT P + A L+N + + + ++ + + ++
Sbjct: 340 DMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKR 399
Query: 355 ANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANE 414
++L+ LL +++N
Sbjct: 400 SHLMDLLH---------------AQRENGI------------------------------ 414
Query: 415 MPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVV 474
+ T+VFV T+ + + L G+ + I+G Q R+ L F++G T ILV
Sbjct: 415 QGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVA 474
Query: 475 TDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWA 518
TDVAARG+DIP +A+V+N+ LP ++HR+GRT RAG G A
Sbjct: 475 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA 518
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 186 bits (473), Expect = 1e-46
Identities = 122/398 (30%), Positives = 193/398 (47%), Gaps = 53/398 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F G VL + +GF +PT IQ + P+ L RD+VG+A TGSGKT ++ LP I
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 187 KLKTHSAKI---GVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMM 243
+ G ++L+P+RELA+Q +F S +R+ + GG Q +
Sbjct: 174 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDL 233
Query: 244 MGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQ 303
++VIATPGR + + +LK V Y+V DEADR+ +MGF+ Q+ +++ +RQ
Sbjct: 234 SRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
Query: 304 TLLFSATLPSSLVDFAKAGLSNPVLVRLDA-ETKISENLEMLFISIKKDEREANLLYLLQ 362
TL++SAT P + A L++P+ V++ + E S N+ + + E+ L L+
Sbjct: 294 TLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLE 353
Query: 363 EAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATI 422
A +E T+
Sbjct: 354 TA-------------------------------------------------SQDNEYKTL 364
Query: 423 VFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGV 482
+F T+ + +T+ L+ G+ I+G +Q R L FR G + I+V TDVAARG+
Sbjct: 365 IFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGI 424
Query: 483 DIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
D+ + VINY +PG+ + ++HR+GRT RAG G A S
Sbjct: 425 DVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAIS 462
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 186 bits (473), Expect = 1e-46
Identities = 122/388 (31%), Positives = 195/388 (49%), Gaps = 55/388 (14%)
Query: 137 VLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTH---SA 193
+L I+K GF +PTPIQ + P+ L+ RD++G+A TGSGKT A++LP + +
Sbjct: 149 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQ 208
Query: 194 KIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIAT 253
G +IL+P+RELA+Q ++F S +RS + GG Q + ++VIAT
Sbjct: 209 DDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIAT 268
Query: 254 PGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPS 313
PGR + + + +LK V Y+V DEADR+ +MGF+ Q+ +++ +RQTLL+SAT P
Sbjct: 269 PGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPR 328
Query: 314 SLVDFAKAGLSNPVLVRL-DAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATE 372
+ A+ L +P + + K ++++ + + E+ LL LL++
Sbjct: 329 EVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQL-------- 380
Query: 373 SQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVE 432
M K I FV T+ +
Sbjct: 381 ------------------------------------------MDGSKILI-FVETKRGCD 397
Query: 433 YVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVIN 492
VT+ L+ G+ I+G Q R + L F++G + I+ TDVAARG+D+ + V+N
Sbjct: 398 QVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVN 457
Query: 493 YSLPGSSKIFIHRVGRTARAGNRGWAFS 520
Y P + + +IHR+GRT RAG +G AF+
Sbjct: 458 YDFPNTLEDYIHRIGRTGRAGAKGMAFT 485
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 186 bits (472), Expect = 2e-46
Identities = 120/415 (28%), Positives = 201/415 (47%), Gaps = 84/415 (20%)
Query: 141 ISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL-------KTHSA 193
+ + G+ +PTPIQR+ IP+ LQ RD++G+A TGSGKTAAF+LP++ + +
Sbjct: 316 VKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHR 375
Query: 194 KIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIAT 253
+G A+I++P+RELA Q +F K ++++ + GG S EDQ + +VVIAT
Sbjct: 376 DLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIAT 435
Query: 254 PGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFP-TN----------- 301
PGR L + L L YV+ DEADR+ +MGF+ + ++L P TN
Sbjct: 436 PGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNE 495
Query: 302 -------------RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISI 348
RQT++F+AT+ S++ A+ L P +V + + K +E +E + +
Sbjct: 496 EALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMV 555
Query: 349 KKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRR 408
+D + L+ +L+ + P+
Sbjct: 556 PEDRKRKKLVEVLESQFQPPI--------------------------------------- 576
Query: 409 LPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGL 468
I+FV + + +++ L G+ + ++G Q R+ L + G
Sbjct: 577 -------------IIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGT 623
Query: 469 TSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+ ILV TDVA RG+D+ ++ V+NY + S + + HR+GRT RAG G A + ++
Sbjct: 624 SDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLT 678
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 186 bits (472), Expect = 2e-46
Identities = 120/415 (28%), Positives = 201/415 (47%), Gaps = 84/415 (20%)
Query: 141 ISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL-------KTHSA 193
+ + G+ +PTPIQR+ IP+ LQ RD++G+A TGSGKTAAF+LP++ + +
Sbjct: 316 VKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHR 375
Query: 194 KIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIAT 253
+G A+I++P+RELA Q +F K ++++ + GG S EDQ + +VVIAT
Sbjct: 376 DLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIAT 435
Query: 254 PGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFP-TN----------- 301
PGR L + L L YV+ DEADR+ +MGF+ + ++L P TN
Sbjct: 436 PGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNE 495
Query: 302 -------------RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISI 348
RQT++F+AT+ S++ A+ L P +V + + K +E +E + +
Sbjct: 496 EALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMV 555
Query: 349 KKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRR 408
+D + L+ +L+ + P+
Sbjct: 556 PEDRKRKKLVEVLESQFQPPI--------------------------------------- 576
Query: 409 LPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGL 468
I+FV + + +++ L G+ + ++G Q R+ L + G
Sbjct: 577 -------------IIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGT 623
Query: 469 TSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+ ILV TDVA RG+D+ ++ V+NY + S + + HR+GRT RAG G A + ++
Sbjct: 624 SDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLT 678
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 185 bits (469), Expect = 3e-46
Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 71/414 (17%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F+ + ++++ NI + +PTP+Q+ IP+I KRD++ A+TGSGKTAAF+LP++
Sbjct: 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238
Query: 187 KLKTHSAKIGVRAV----------------ILSPSRELAIQTHRVFKEFSKGSDLRSILL 230
++ T ++AV +L+P+RELA+Q + ++FS S +R ++
Sbjct: 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298
Query: 231 TGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQ 290
GG + Q + +++ATPGR + + + L +Y+V DEADR+ +MGF+ Q
Sbjct: 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 358
Query: 291 LNELLV--AFPTN--RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFI 346
+ ++ P R T++FSAT P + A+ L + + + SEN+ +
Sbjct: 359 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 418
Query: 347 SIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXX 406
++ ++ + LL +L AT S
Sbjct: 419 WVEDLDKRSFLLDILG-------ATGS--------------------------------- 438
Query: 407 RRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRA 466
+ T+VFV T+ + + L + GY + I+G +Q R++ L+ FR+
Sbjct: 439 -----------DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 487
Query: 467 GLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
G + ILV T VAARG+DI + +VIN+ LP + ++HR+GRT R GN G A S
Sbjct: 488 GKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 541
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 185 bits (469), Expect = 3e-46
Identities = 120/396 (30%), Positives = 194/396 (48%), Gaps = 52/396 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF + G +L + GF PTPIQ ++ P+ +Q RDIV +A+TGSGKT +++P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 187 KLKT--HSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMM 244
L+ + +++G ++LSP+RELA Q +F + S + L GG Q +
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 245 GNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQT 304
D+V+ATPGR + + L+ + Y+V DEADR+ +MGF+ Q+ +++ PT RQT
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQT 338
Query: 305 LLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEA 364
L+++AT P + A L NP V + DE AN
Sbjct: 339 LMYTATWPKGVRKIAADLLVNPAQVNIG----------------NVDELVANKSITQHIE 382
Query: 365 IKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVF 424
+ P+ + +++++ + ++ P K I+F
Sbjct: 383 VVAPMEKQRRLEQILR--------------------------------SQEPGSK-VIIF 409
Query: 425 VPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDI 484
T+ + +T+ L + + I+G +Q R L FR+G T +LV TDVAARG+D+
Sbjct: 410 CSTKRMCDQLTRNLTR-QFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDV 468
Query: 485 PLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
+ V+NY P + ++HR+GRT RAG G AF+
Sbjct: 469 KDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFT 504
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 184 bits (467), Expect = 6e-46
Identities = 132/399 (33%), Positives = 204/399 (51%), Gaps = 65/399 (16%)
Query: 133 LSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHS 192
LS+ ++ + + GF TP+Q +TIP + +D+V A TGSGKT AF+LP IE ++ +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 193 A----KIGVRAVILSPSRELAIQTHRVFKEF-SKGSDLRSILLTGGDSLE-DQFGMMMGN 246
+ V VI+SP+REL+ Q H+V + F S ++ S+LL GG +E D +
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 247 PDVVIATPGRFLHLKVEMN-LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
+++I TPGR + M LD +++E ++ DEADRL +MGFQ+Q+N ++ P R+T
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 306 LFSATLPSSLVDFAKAGLSN--PVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQE 363
LFSAT ++ D AKAGL N V+ ++++K S L ++ + D++ + L++LL
Sbjct: 203 LFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHLL-- 260
Query: 364 AIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIV 423
E++ KKL +V
Sbjct: 261 -------IENKNKKL-------------------------------------------VV 270
Query: 424 FVPTRHHVEYVTQLLKNCGYLVSY----IYGALNQHARKQQLYNFRAGLTSILVVTDVAA 479
F T V+Y +L L S +G ++Q R L +F + +L+ TDVAA
Sbjct: 271 FFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCTDVAA 330
Query: 480 RGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWA 518
RG+DIP + V+ Y P +FIHRVGRTAR +G A
Sbjct: 331 RGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRA 369
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 183 bits (465), Expect = 1e-45
Identities = 125/404 (30%), Positives = 203/404 (49%), Gaps = 50/404 (12%)
Query: 123 HKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVL 182
H SF L V+ + ++GF +PT IQ + P+ L RD+VG+A+TGSGKT A++L
Sbjct: 234 HPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYML 293
Query: 183 PMIEKLKTHSAKI---GVRAVILSPSRELAIQTHRVFKEFSK--GSDLRSILLTGGDSLE 237
P I + I G A++L+P+RELA Q V +++ ++R + GG S
Sbjct: 294 PAIVHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKV 353
Query: 238 DQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVA 297
Q + +V+IATPGR + N +L+ Y+V DEADR+ +MGF+ Q+ +++
Sbjct: 354 PQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 413
Query: 298 FPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDA-ETKISENLEMLFISIKKDEREAN 356
+RQ +++SAT P + A L++ + + + + + N+ + + E+
Sbjct: 414 IRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQR 473
Query: 357 LLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMP 416
L+ LL E I +K N N++
Sbjct: 474 LVCLLNE-----------ISPIKNSGN---------------------------NGNKI- 494
Query: 417 SEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTD 476
IVFV T+ VE + Q+++ GY + I+G Q+ R L +FR G ++IL+ TD
Sbjct: 495 -----IVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATD 549
Query: 477 VAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
VA+RG+D+ L VINY P SS+ ++HR+GRT R G A++
Sbjct: 550 VASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYT 593
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 182 bits (463), Expect = 2e-45
Identities = 140/397 (35%), Positives = 206/397 (51%), Gaps = 52/397 (13%)
Query: 133 LSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHS 192
LS ++ +++ F TP+Q TIPL+ +D+ A TGSGKT AFV+P++E L+ +
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82
Query: 193 A----KIGVRAVILSPSRELAIQTHRVFKEF-SKGSDLRSILLTGGDSLEDQFGMMMGNP 247
+ V VI+SP+REL+ Q + V + F S +++ S+LL GG ++ ++
Sbjct: 83 SFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEG 142
Query: 248 -DVVIATPGRFLHLKVEMN-LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
+V+I TPGR + M LD +++E ++ DEADRL EMGFQ Q+N ++ P R+T
Sbjct: 143 CNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTG 202
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAI 365
LFSAT + + AKAGL NPV V + A++K SE+ + L S K +L Y+ EA
Sbjct: 203 LFSATQTEGVEELAKAGLRNPVRVEVRAKSK-SESSQQLTNS--KTPSGLHLEYMECEAD 259
Query: 366 KMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFV 425
K SQ+ L +N S+K IVF
Sbjct: 260 K----KSSQLVDLLIKN----------------------------------SDKKLIVFF 281
Query: 426 PTRHHVEYVTQLLKNCGYLVSY----IYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
T V+Y +L L S I+G + Q+AR + L +F + L+ TDVAARG
Sbjct: 282 MTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARG 341
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWA 518
+DIP + V+ Y P +F HR GRTAR G +G A
Sbjct: 342 LDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRA 378
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 182 bits (461), Expect = 3e-45
Identities = 117/380 (30%), Positives = 192/380 (49%), Gaps = 55/380 (14%)
Query: 146 FRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKI----GVRAVI 201
F +PTPIQ + PL L RD+VG+A+TGSGKT A++LP I + H + G ++
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHIN-HQPYLERGDGPICLV 170
Query: 202 LSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLK 261
L+P+RELA Q +V ++ K S L+S + GG Q + ++ IATPGR +
Sbjct: 171 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 230
Query: 262 VEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKA 321
+L+ Y+V DEADR+ +MGF+ Q+ +++ +RQTL++SAT P + A+
Sbjct: 231 ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 290
Query: 322 GLSNPVLVRL-DAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQ 380
L + + + + E + N+ + + E++ L+ L++E +
Sbjct: 291 FLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM--------------- 335
Query: 381 QNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKN 440
E TI+FV T+ + +T+ ++
Sbjct: 336 ----------------------------------AEKENKTIIFVETKRRCDDLTRRMRR 361
Query: 441 CGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSK 500
G+ I+G +Q R L FR+G IL+ TDVA+RG+D+ + VINY P SS+
Sbjct: 362 DGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSE 421
Query: 501 IFIHRVGRTARAGNRGWAFS 520
++HR+GRTAR+ N+G A++
Sbjct: 422 DYVHRIGRTARSTNKGTAYT 441
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 181 bits (460), Expect = 4e-45
Identities = 127/431 (29%), Positives = 206/431 (47%), Gaps = 72/431 (16%)
Query: 110 NDYFNTTADAAAKHKKG---SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDI 166
++Y N DA+ K F+S L +L++ NI F +PTP+Q+ +IP++ + RD+
Sbjct: 135 DNYDNIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDL 194
Query: 167 VGMARTGSGKTAAFVLPMIEKL-------------KTHSAKIGVRAVILSPSRELAIQTH 213
+ A+TGSGKT F+ P+ +L +S K A++L+P+RELA Q
Sbjct: 195 MACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIF 254
Query: 214 RVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEY 273
++F+ S +R ++ GG + +Q + D+++ATPGR L + L +++Y
Sbjct: 255 EEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKY 314
Query: 274 VVFDEADRLFEMGFQEQLNELL----VAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLV 329
+V DEADR+ +MGF+ Q+ ++ + NRQTL+FSAT P + A+ L N + +
Sbjct: 315 LVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFL 374
Query: 330 RLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXX 389
+ SEN+ + + ++++ LL LL K + K++ Q
Sbjct: 375 SVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQ-------- 426
Query: 390 XXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIY 449
+T L + + I+
Sbjct: 427 --------------------------------------------LTDFLIMQNFKATAIH 442
Query: 450 GALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRT 509
G Q R++ L F+A + ILV T VAARG+DIP + +VINY LP ++HR+GRT
Sbjct: 443 GDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRT 502
Query: 510 ARAGNRGWAFS 520
RAGN G A S
Sbjct: 503 GRAGNTGVATS 513
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 181 bits (459), Expect = 5e-45
Identities = 129/433 (29%), Positives = 213/433 (48%), Gaps = 61/433 (14%)
Query: 101 ATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKK------GFRQPTPIQR 154
A+N +D++ D + + + K S + + +++S K +++PTPIQ
Sbjct: 134 ASNHNDEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNYKEPTPIQA 193
Query: 155 KTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGV-RAVILSPSRELAIQTH 213
T P +L RD+VG+A TGSGKT AF +P ++ L S V R +++SP+RELAIQT+
Sbjct: 194 ATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTY 253
Query: 214 RVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEY 273
+G++L+++++ GG +Q N V+I TPGR L L + ++D V Y
Sbjct: 254 ENLNSLIQGTNLKAVVVYGGAPKSEQ-ARAAKNASVIIGTPGRLLDLINDGSIDCSQVGY 312
Query: 274 VVFDEADRLFEMGFQEQLNELLVAFPT-----NRQTLLFSATLPSSLVDFAKAGLSNPVL 328
+V DEADR+ + GF++ + ++ P +RQT+ FSAT P S+ A L +PV
Sbjct: 313 LVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVK 372
Query: 329 VRLDA-ETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXX 387
+ + + E S+N+ + E + P + E + L +++
Sbjct: 373 ITIGSDELAASQNITQIV-----------------EILDDPRSKERMLDNLLRKHLSSGG 415
Query: 388 XXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSY 447
+ ++FV + V L Y V
Sbjct: 416 -----------------------------KDDKILIFVLYKKEAARVEGTLAR-KYNVVG 445
Query: 448 IYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVG 507
I+G ++Q AR Q L +F++G +LV TDVAARG+DIP + VIN + P + + ++HR+G
Sbjct: 446 IHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIG 505
Query: 508 RTARAGNRGWAFS 520
RT RA +G A +
Sbjct: 506 RTGRANTKGTAIT 518
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 181 bits (458), Expect = 6e-45
Identities = 104/396 (26%), Positives = 204/396 (51%), Gaps = 53/396 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF G+ + VL + + GF +P+ IQ++ + ILQ RD++ A++G+GKT+ L + +
Sbjct: 36 SFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ 95
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
+ T S + V+A+ILSP+RELA QT + + +++++ GG+S+ + +
Sbjct: 96 VVDTSSRE--VQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHG 153
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
VV TPGR + +L ++++ ++ DE+D + GF++Q+ ++ P + Q L
Sbjct: 154 VHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCL 213
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SATLP +++ ++ PV + + + E ++ F++++K+E + + L L + +
Sbjct: 214 VSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT 273
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ A ++F
Sbjct: 274 ITQA---------------------------------------------------VIFCN 282
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
T+ V+Y+++ +++ + VS ++G + Q R + FR+G + +L+ TDV ARG+D+
Sbjct: 283 TKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQ 342
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
++ VINY LP + +++IHR+GR+ R G +G A + V
Sbjct: 343 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 378
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 180 bits (457), Expect = 8e-45
Identities = 117/397 (29%), Positives = 198/397 (49%), Gaps = 51/397 (12%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F+ L V+ I ++G++ PT IQ + P+ + + VG+A+TGSGKT ++LP I
Sbjct: 141 FSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVH 200
Query: 188 LKTHSAKI---GVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMM 244
+ G A++L+P+RELA Q +V EF S +R+ + GG Q +
Sbjct: 201 INNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQ 260
Query: 245 GNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQT 304
++VIATPGR + + +LK Y+V DEADR+ +MGF+ Q+ +++ +RQT
Sbjct: 261 RGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 320
Query: 305 LLFSATLPSSLVDFAKAGLSNPVLVRLDA-ETKISENLEMLFISIKKDEREANLLYLLQE 363
L++SAT P + A+ L N + + + + E + N+ + + +E L LL +
Sbjct: 321 LMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSD 380
Query: 364 AIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIV 423
+ + +E P + I+
Sbjct: 381 ---------------------------------------------IYDTSESPGK--III 393
Query: 424 FVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVD 483
FV T+ V+ + + +++ G I+G +Q R L FR+G ++ILV TDVAARG+D
Sbjct: 394 FVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLD 453
Query: 484 IPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
+ + VIN+ P +S+ +IHR+GRT R+ +G +F+
Sbjct: 454 VDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFA 490
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 180 bits (456), Expect = 1e-44
Identities = 127/397 (31%), Positives = 197/397 (48%), Gaps = 54/397 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F S GL +L + GF PTPIQ +T P+ LQ RDIV +A+TGSGKT +++P
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 187 KLK--THSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMM 244
L+ + ++ G +IL+P+RELA Q F + S + L GG Q +
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 245 GNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQT 304
D+V+ATPGR + +D + V +V DEADR+ +MGF+ Q+ +++ P RQT
Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT 615
Query: 305 LLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEA 364
L+++AT P + A L NPV V + + DE AN +A
Sbjct: 616 LMYTATWPKEVRKIASDLLVNPVQVNIG----------------RVDELAAN------KA 653
Query: 365 IKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVF 424
I V Q++K ++ ++ + E S+ I+F
Sbjct: 654 ITQYVEVVPQMEKERR-------------------------LEQILRSQERGSK--VIIF 686
Query: 425 VPTRHHVEYVTQLL-KNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVD 483
T+ +++ + + ++ G +V I+G Q R L FR+G + +L+ TDVAARG+D
Sbjct: 687 CSTKRLCDHLARSVGRHFGAVV--IHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLD 744
Query: 484 IPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
I + VINY P + ++HR+GRT RAG G AF+
Sbjct: 745 IKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFT 781
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 178 bits (452), Expect = 3e-44
Identities = 130/435 (29%), Positives = 211/435 (47%), Gaps = 62/435 (14%)
Query: 95 SDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQR 154
S+ E+ D+ + N A + + +K F+ LS+ + I + GF T IQ+
Sbjct: 60 SESEELDNENEDERVQKSVNLNASSTSDIEK--FSDLQLSENIQKAIKEMGFETMTEIQK 117
Query: 155 KTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKT--HSAKIGVRAVILSPSRELAIQT 212
++IP +L RD++G A+TGSGKT AF++P IE L + G +I+SP+RELA+Q
Sbjct: 118 RSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQI 177
Query: 213 HRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLKSV 271
V KE K ++ GG + + ++ ++++ATPGR L HL+ +++
Sbjct: 178 FGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNL 237
Query: 272 EYVVFDEADRLFEMGFQEQLNELLVAFPT-NRQTLLFSATLPSSLVDFAKAGLS-NPVLV 329
+V DEADR+ E+GF++++ +++ P+ NRQTLLFSAT + + D A+ L P+ V
Sbjct: 238 RSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYV 297
Query: 330 RLDA--ETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXX 387
+D+ T E LE ++ + D+R L L+ +K V
Sbjct: 298 NVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKV------------------ 339
Query: 388 XXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSY 447
IVF+ + V+Y+ +LL V
Sbjct: 340 ----------------------------------IVFMSSCASVKYMAELLNYIDLPVLD 365
Query: 448 IYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVG 507
++G Q R + F IL+ T+VAARG+DIP + ++ Y P + +IHRVG
Sbjct: 366 LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG 425
Query: 508 RTARAGNRGWAFSIV 522
RTAR G +G S++
Sbjct: 426 RTAR-GTKGTGKSLM 439
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 177 bits (450), Expect = 5e-44
Identities = 131/408 (32%), Positives = 185/408 (45%), Gaps = 64/408 (15%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F S GLSK + ++ QPT IQ+ IP IL+ RD +G A+TGSGKT AF PM+ K
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 188 LKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNP 247
+ G+ V+L+P+RELA+Q F ++R ++ GG+S+ Q + P
Sbjct: 64 WSEDPS--GMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKP 121
Query: 248 DVVIATPGRFLHLKVEMNLD----LKSVEYVVFDEADRLFEMGFQEQLNELLVAFP--TN 301
+IATPGR H + D L +Y+V DEAD L F + L + A P
Sbjct: 122 HFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDK 181
Query: 302 RQTLLFSATLPSSLVDFAKAGL--SNPVLVRLDAET----KISENLEMLFISIKKDEREA 355
RQTLLF+AT+ + A + P L E+ I L++ +I + + +EA
Sbjct: 182 RQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEA 241
Query: 356 NLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEM 415
L LL E
Sbjct: 242 YLYQLL--------------------------------------------------TCEE 251
Query: 416 PSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVT 475
K I+FV E + + LK V+ ++ + Q R L+ FRA IL+ T
Sbjct: 252 YENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIAT 311
Query: 476 DVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
DVA+RG+DIP + V+NY +P +FIHR GRTARAG G A S V+
Sbjct: 312 DVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVT 359
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 177 bits (450), Expect = 5e-44
Identities = 122/397 (30%), Positives = 196/397 (48%), Gaps = 56/397 (14%)
Query: 123 HKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVL 182
H F G S V+ ++ +KGF +PT IQ + P+ L RD+VG+A+TGSGKT +F+L
Sbjct: 84 HPIQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFIL 143
Query: 183 PMIEKLKTHSAKI---GVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQ 239
P + K G ++L+P+REL +Q +V EF +LRS + GG S + Q
Sbjct: 144 PALVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQ 203
Query: 240 FGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFP 299
+ +VVIATPGR + L + + L V ++V DEADR+ +MGF+ QL +++
Sbjct: 204 IRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTN 263
Query: 300 TNRQTLLFSATLPSSLVDFAKAGLSNPVLVRL-DAETKISENLEMLFISIKKDEREANLL 358
NRQTL++SAT P + A++ ++ + V + + E K + ++ + E+E L+
Sbjct: 264 ANRQTLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLI 323
Query: 359 YLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSE 418
+L V +K+
Sbjct: 324 GVLDNFKGDKVIVFCNMKR----------------------------------------- 342
Query: 419 KATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVA 478
T +EYV L GY + ++G +Q+ R + L +FR+G IL+ T+VA
Sbjct: 343 --------TCDDLEYV---LNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVA 391
Query: 479 ARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNR 515
RG+D+ + VIN+ PGS + ++HR+GRTAR +
Sbjct: 392 GRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTK 428
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 177 bits (450), Expect = 5e-44
Identities = 127/385 (32%), Positives = 191/385 (48%), Gaps = 60/385 (15%)
Query: 144 KGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMI-------EKLKTHSAKIG 196
K F +P+PIQ T P +L RD++G+A+TGSGKT AF +P I +K+ S K+
Sbjct: 132 KTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVN 191
Query: 197 VRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGR 256
++LSP+RELA+Q V +E + L+SI + GG S Q + D+VI TPGR
Sbjct: 192 PTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGR 251
Query: 257 FLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLV 316
L L L V +VV DEADR+ +MGF+E + +L RQ ++FSAT P +
Sbjct: 252 LRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVH 311
Query: 317 DFAKAGLS-NPVLVRLDAETKISENLEMLFISIKKDE--REANLLYLLQEAIKMPVATES 373
A+ + NP+ V + ++ N +++ I DE R+ L+ LL++ K
Sbjct: 312 KLAQEFMDPNPIKV-IIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHK------- 363
Query: 374 QIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEY 433
Q+N +VF + E
Sbjct: 364 -----SQKN-------------------------------------RVLVFALYKVEAER 381
Query: 434 VTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINY 493
+ + L+ G+ I+G Q R + L F+ G +LV TDVAARG+DIP + VINY
Sbjct: 382 LERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINY 441
Query: 494 SLPGSSKIFIHRVGRTARAGNRGWA 518
+ P +++ ++HR+GRT RAG +G A
Sbjct: 442 TFPLTTEDYVHRIGRTGRAGKKGVA 466
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 177 bits (448), Expect = 9e-44
Identities = 118/410 (28%), Positives = 201/410 (48%), Gaps = 72/410 (17%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F L + + NI+K G+ + TP+Q+ +IP+IL RD++ A+TGSGKTAAF+LP++
Sbjct: 289 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL- 347
Query: 187 KLKTHSAKIGVRA-----------VILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDS 235
H G+ A +I++P+REL Q + ++FS G+ +R++++ GG
Sbjct: 348 ---AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQ 404
Query: 236 LEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL 295
L ++ +++ ATPGR + + + + LK ++Y+V DEADR+ +MGF ++ +L+
Sbjct: 405 LGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI 464
Query: 296 ----VAFPTNRQTLLFSATLPSSLVDFAKAGL-SNPVLVRLDAETKISENLEMLFISIKK 350
+ RQTL+FSAT P + A L SN + V + +++ + + +
Sbjct: 465 SCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQ 524
Query: 351 DEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLP 410
+ L+ +L+
Sbjct: 525 FSKREKLVEILRNI---------------------------------------------- 538
Query: 411 NANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTS 470
++ T+VFV T+ +++ L + I+G Q R+Q L +FR G
Sbjct: 539 ------GDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCP 592
Query: 471 ILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
+LV T VAARG+DI + +VIN+ LP + ++HR+GRT R GN G A S
Sbjct: 593 VLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAIS 642
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 176 bits (447), Expect = 1e-43
Identities = 114/385 (29%), Positives = 201/385 (51%), Gaps = 57/385 (14%)
Query: 137 VLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIG 196
V+ NI K GF++PTPIQ + P++LQ D++G+A+TG+GKT +++P L + G
Sbjct: 253 VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKG 312
Query: 197 VR----AVILSPSRELAIQTHRVFKEFS-KGSDLRSILLTGGDSLEDQFGMMMGNPDVVI 251
R ++L+P+RELA+Q ++S KG LRS+ + GG + ++Q + D++I
Sbjct: 313 QRNRPGMLVLTPTRELALQVEGECCKYSYKG--LRSVCVYGGGNRDEQIEELKKGVDIII 370
Query: 252 ATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATL 311
ATPGR L++ ++LK++ Y+V DEAD++ +MGF+ Q+ ++L+ +RQT++ SAT
Sbjct: 371 ATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATW 430
Query: 312 PSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVAT 371
P S+ A++ L P++V + L+++ +S ++K +
Sbjct: 431 PHSVHRLAQSYLKEPMIVYVG-------TLDLVAVS----------------SVKQNIIV 467
Query: 372 ESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHV 431
++ +K M S IVFV +
Sbjct: 468 TTEEEKWSHMQTF---------------------------LQSMSSTDKVIVFVSRKAVA 500
Query: 432 EYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVI 491
++++ L V ++G Q R++ L NF+ G IL+ TD+A+RG+D+ + +V
Sbjct: 501 DHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVY 560
Query: 492 NYSLPGSSKIFIHRVGRTARAGNRG 516
N+ P + + ++HR+GRT RAG G
Sbjct: 561 NFDFPRNIEEYVHRIGRTGRAGRTG 585
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 176 bits (447), Expect = 1e-43
Identities = 119/383 (31%), Positives = 189/383 (49%), Gaps = 61/383 (15%)
Query: 146 FRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKI---GVRAVIL 202
F++PT IQ + P+ + RDI+ +A+TGSGKT AF+LP + + + + G ++L
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVL 208
Query: 203 SPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKV 262
P+RELA Q V +F L+ L GG S Q + D+V+ATPGR L
Sbjct: 209 LPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLD 268
Query: 263 EMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSL----VDF 318
++K Y+V DEADR+ +MGF+ Q+ +++ +RQTL+FSAT P + DF
Sbjct: 269 NGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALASDF 328
Query: 319 AK-AGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKK 377
K A N + L A I++ +++L ++ ++A L+ LL +
Sbjct: 329 QKDAAFLNVGSLELAANHNITQVVDIL----EEHAKQAKLMELLNHIMNQ---------- 374
Query: 378 LKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQL 437
E TI+FV T+ + +T+
Sbjct: 375 ---------------------------------------KECKTIIFVETKRKADELTRA 395
Query: 438 LKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPG 497
++ G+ I+G NQ R L F+AG T I++ TDVAARG+D+ + VINY P
Sbjct: 396 MRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPN 455
Query: 498 SSKIFIHRVGRTARAGNRGWAFS 520
+S+ ++HR+GRT R+ +G A++
Sbjct: 456 NSEDYVHRIGRTGRSDKKGTAYT 478
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 176 bits (446), Expect = 2e-43
Identities = 133/414 (32%), Positives = 196/414 (47%), Gaps = 63/414 (15%)
Query: 121 AKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAF 180
++H + SF+ G+S ++ + +PT IQ I IL+ R+ +G A+TGSGKTAAF
Sbjct: 2 SEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAF 61
Query: 181 VLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQF 240
LP+IEK + G+ A+IL+P+RELAIQ F +L+ L+ GG + Q
Sbjct: 62 ALPIIEKWSKDPS--GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQS 119
Query: 241 GMMMGNPDVVIATPGRFLHL----KVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLV 296
+ P VV+ATPGR L E L+ ++++V DEADRL F + L++
Sbjct: 120 IDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFS 179
Query: 297 AFPT--NRQTLLFSATLPSSL--VDFAKAGLSNPVLVRLDAET---KISENLEMLFISIK 349
P +RQTLLF+AT+ ++ + + + P L + ET + L+ +I +
Sbjct: 180 VLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVS 239
Query: 350 KDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRL 409
REA L++LL
Sbjct: 240 SQVREAYLVHLL------------------------------------------------ 251
Query: 410 PNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLT 469
E + A I TR E + +L+ V+ ++ + Q R L FRA
Sbjct: 252 -TIPENAKKSAIIFVNRTR-TAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAA 309
Query: 470 SILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
ILV TDVA+RG+DIP + VIN+ LP +IHRVGRTARAG G + SIV+
Sbjct: 310 KILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVT 363
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 176 bits (446), Expect = 2e-43
Identities = 116/378 (30%), Positives = 185/378 (48%), Gaps = 52/378 (13%)
Query: 145 GFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKT--HSAKIGVRAVIL 202
GF P+PIQ ++ P+ +Q RDIV +A+TGSGKT +++P L+ + +++G ++L
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVL 307
Query: 203 SPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKV 262
SP+RELA Q +F K S + L GG Q + D+V+ATPGR +
Sbjct: 308 SPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILE 367
Query: 263 EMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAG 322
+ L V Y+V DEADR+ +MGF+ Q+ +++ PT RQTL+++AT P + A
Sbjct: 368 MKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADL 427
Query: 323 LSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQN 382
L NP V + DE AN + P+ S+++++ +
Sbjct: 428 LVNPAQVNIG----------------NVDELVANKSITQTIEVLAPMEKHSRLEQILR-- 469
Query: 383 XXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCG 442
++ P K I+F T+ + + + L
Sbjct: 470 ------------------------------SQEPGSK-IIIFCSTKRMCDQLARNLTRT- 497
Query: 443 YLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIF 502
+ + I+G +Q R L FR+G T +LV TDVAARG+D+ + V+NY P + +
Sbjct: 498 FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDY 557
Query: 503 IHRVGRTARAGNRGWAFS 520
+HR+GRT RAG G A++
Sbjct: 558 VHRIGRTGRAGATGLAYT 575
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 176 bits (445), Expect = 2e-43
Identities = 107/419 (25%), Positives = 209/419 (49%), Gaps = 56/419 (13%)
Query: 104 ESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQK 163
+++D N F T+ D +F + L + +L I GF +P+ IQ+++I I++
Sbjct: 7 QAEDLSNVEFETSEDVEVIP---TFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKG 63
Query: 164 RDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGS 223
RD++ A++G+GKTA F + +++ L T + V + LSP+RELA+Q +V
Sbjct: 64 RDVIAQAQSGTGKTATFSISILQSLDTTLRETQV--LCLSPTRELAVQIQKVILALGDMM 121
Query: 224 DLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF 283
+++ + GG +L + + +V TPGR + L ++++ +V DEAD +
Sbjct: 122 NVQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEML 181
Query: 284 EMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEM 343
GF+EQ+ ++ P Q +L SATLP +++ +++P+ + + + E ++
Sbjct: 182 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQ 241
Query: 344 LFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXX 403
F++++++E + + L L + + + A
Sbjct: 242 FFVAVEREEWKFDTLCDLYDTLTITQA--------------------------------- 268
Query: 404 XXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYN 463
++F T+ V+++T+ ++ + VS ++G + Q R + +
Sbjct: 269 ------------------VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKE 310
Query: 464 FRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
FRAG + +L+ TDV ARG+D+ ++ VINY LP + +++IHR+GR+ R G +G A + V
Sbjct: 311 FRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 175 bits (443), Expect = 4e-43
Identities = 112/388 (28%), Positives = 201/388 (50%), Gaps = 54/388 (13%)
Query: 137 VLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIG 196
+L I+K GF +P+PIQ + P++LQ D++G+A+TG+GKT AF+LP + + S G
Sbjct: 294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRG 353
Query: 197 VRA----VILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIA 252
R ++L+P+RELA+Q K++S ++++ + GG + Q + +++I
Sbjct: 354 TRGGANVLVLAPTRELALQIEMEVKKYSFRG-MKAVCVYGGGNRNMQISDLERGAEIIIC 412
Query: 253 TPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLP 312
TPGR L + +D+ ++ Y+V DEADR+ +MGF+ Q+ ++++ +RQT++ SAT P
Sbjct: 413 TPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWP 472
Query: 313 SSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATE 372
+ A++ + NP+ V + + + + I + +D+ + K T
Sbjct: 473 PGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMD-----------KFNTIT- 520
Query: 373 SQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVE 432
S +K + S I+F + +
Sbjct: 521 SFVKNMS-------------------------------------STDKIIIFCGRKVRAD 543
Query: 433 YVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVIN 492
++ L G++ I+G +Q R+Q + + ++G+ ILV TDVA+RG+DI + +VIN
Sbjct: 544 DLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVIN 603
Query: 493 YSLPGSSKIFIHRVGRTARAGNRGWAFS 520
Y P + + ++HRVGRT RAG +G + S
Sbjct: 604 YDFPHNIEEYVHRVGRTGRAGRQGTSIS 631
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 174 bits (441), Expect = 6e-43
Identities = 123/403 (30%), Positives = 199/403 (48%), Gaps = 62/403 (15%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F+ F LSK L + + +R T IQ++TI L LQ +D++G A+TGSGKT AF++P++E
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 188 LKT--HSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMG 245
L ++ G+ +I+SP+RELA QT V ++ K D + L+ GG L+ + +
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERIN 189
Query: 246 NPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQT 304
N ++++ TPGR L H+ ++ ++ +V DEADR+ +MGF + +N ++ P RQT
Sbjct: 190 NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQT 249
Query: 305 LLFSATLPSSLVDFAKAGLSNPVLVRLDAETKIS--ENLEMLFISIKKDEREANLLYLLQ 362
LLFSAT S+ D A+ L NP V + + K S LE +I + ++ + L L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 363 EAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATI 422
+K K +I
Sbjct: 310 SHLK----------------------------------------------------KKSI 317
Query: 423 VFVPTRHHVEYVTQLLKNC--GYLVSYIYGALNQHARKQQLYN-FRAGLTSILVVTDVAA 479
VF + V+Y+ ++ G + ++G Q R+ ++YN F ++L TD+AA
Sbjct: 318 VFFSSCKEVQYLYRVFCRLRPGVSILALHGR-QQQMRRMEVYNEFVRKRAAVLFATDIAA 376
Query: 480 RGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
RG+D P + V+ + P + +IHR GRTAR G A I+
Sbjct: 377 RGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLIL 419
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 174 bits (441), Expect = 6e-43
Identities = 123/401 (30%), Positives = 194/401 (47%), Gaps = 55/401 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SFA F KL++ I K + QPTPIQ IP L RD++G+A+TGSGKTAA++ P I
Sbjct: 266 SFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIV 325
Query: 187 KLKTH---SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMM 243
+ A G AVI+ P+RELAIQ + K+F K ++ I GG S +Q +
Sbjct: 326 HIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNEL 385
Query: 244 MG-NPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNR 302
++V+ TPGR + L + ++VFDEADR+F+MGF+ Q+ + +R
Sbjct: 386 QNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDR 445
Query: 303 QTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQ 362
Q L+FSAT + A+ L +PV + + + ++E ++ ++ L +L++
Sbjct: 446 QCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQ--NQDVKLHWLIR 503
Query: 363 EAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATI 422
+ E S +
Sbjct: 504 NLV------------------------------------------------EFASLGKVL 515
Query: 423 VFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGV 482
+FV + E V + LK + + ++G + Q R + L FR + ILV TDVAARG+
Sbjct: 516 IFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVATDVAARGL 574
Query: 483 DIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
DI + VIN+ + +HR+GRT RAG++G A+++V+
Sbjct: 575 DISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVT 615
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 172 bits (437), Expect = 2e-42
Identities = 116/400 (29%), Positives = 194/400 (48%), Gaps = 43/400 (10%)
Query: 132 GLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMI------ 185
GL +L + K +++P+ IQR IP++LQ++D++G+A TGSGKTAAF++P+I
Sbjct: 255 GLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKL 314
Query: 186 EKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMG 245
L + +G AV+L+P+RELA Q +F++ R + + GG + E+Q M
Sbjct: 315 PPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQ 374
Query: 246 NPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
+V+ATPGR L L YVV DEADR+ +MGF++ +N++L + P++ +
Sbjct: 375 GAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASE 434
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLL--YLLQE 363
+ L ++ S + + S R ANL YL+ E
Sbjct: 435 KDGSILATA--------------------NSSSSRRQTIMFSATLPPRVANLAKSYLI-E 473
Query: 364 AIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPS-EKATI 422
+ + + Q +Q RR+ E I
Sbjct: 474 PVMLTIGNIGQAVDRVEQRVEMISDDSKKW-------------RRVEEILESNRFSPPII 520
Query: 423 VFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGV 482
+FV + ++E + + L G+ ++G+ +Q R++ + R ILV TD+A RG+
Sbjct: 521 IFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGI 580
Query: 483 DIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
DIP ++ V+NY++ S + + HR+GRT RAG G A + +
Sbjct: 581 DIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFL 620
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 172 bits (437), Expect = 2e-42
Identities = 99/396 (25%), Positives = 201/396 (50%), Gaps = 53/396 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F + GL + +L I GF +P+ IQ++ I I++ RD++ +++G+GKTA F + +++
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
L + +A+IL+P+RELA+Q + +++ GG ++ + +
Sbjct: 99 CLDIQVRE--TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYG 156
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
VV TPGR + +L ++++ +V DEAD + GF+EQ+ ++ P Q +L
Sbjct: 157 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SATLP +++ +++P+ + + + E ++ F++++++E + + L L + +
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 276
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ A ++F
Sbjct: 277 ITQA---------------------------------------------------VIFCN 285
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
T+ V+++T+ ++ + VS ++G + Q R+ + FR+G + +L+ TDV ARG+D+P
Sbjct: 286 TKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQ 345
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
++ +INY LP + +++IHR+GR+ R G +G A + V
Sbjct: 346 VSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 172 bits (435), Expect = 3e-42
Identities = 128/411 (31%), Positives = 199/411 (48%), Gaps = 75/411 (18%)
Query: 136 LVLINISKKGFRQPTPIQRKTIPLIL---QKRDIVGMARTGSGKTAAFVLPMIEKL---- 188
L+ + I + F PTPIQR TIP + Q RD +G+A TGSGKT AFV+P++ K+
Sbjct: 184 LLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSP 243
Query: 189 -KTHSAKI--GVRAVILSPSRELAIQ----THRVFKEFSKGS--DLRSILLTGGDSLEDQ 239
+ S KI G +A+IL+P+REL Q T +V K +SK S D + I + GG SLE+
Sbjct: 244 PRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEI 303
Query: 240 FGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAF- 298
+ D+++ATPGR + L +K VE +V DEAD++ ++GF++Q+ +L
Sbjct: 304 SFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVD 363
Query: 299 -----PTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDER 353
NRQTL+F+AT+ + A + PV + ET
Sbjct: 364 INADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEP-------------- 409
Query: 354 EANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNAN 413
L+Q+ ++ E + KKLK
Sbjct: 410 ------LIQQVVEYADNDEDKFKKLKPIVAKY---------------------------- 435
Query: 414 EMPSEKATIVFVPTRHHVEYVTQ-LLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSIL 472
+ I+F+ + +++ + K V+ ++G+ +Q R+ L FR I+
Sbjct: 436 ----DPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIM 491
Query: 473 VVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+ T+VAARG+DIP ++ V+N+ + +IHR+GRT RA N G A S VS
Sbjct: 492 IATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVS 542
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 172 bits (435), Expect = 3e-42
Identities = 104/397 (26%), Positives = 192/397 (48%), Gaps = 53/397 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F L +L I GF +P+ IQ++ I IL +RD++ A++G+GKTA F + +++
Sbjct: 20 TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
K+ T + +A+IL+P+RELA Q +V ++ GG + D +
Sbjct: 80 KIDTSLKQC--QALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAG 137
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
VV+ TPGR + L +V+ V DEAD + GF++Q+ ++ P Q +L
Sbjct: 138 VHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVL 197
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SAT+P +++ + +P+ + + + E ++ +++++K+E + + L L E +
Sbjct: 198 LSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVT 257
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ A ++F
Sbjct: 258 VTQA---------------------------------------------------VIFCN 266
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
TR V+++T+ L + VS ++G ++Q R ++ FR G + IL+ TD+ ARG+D+
Sbjct: 267 TRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQ 326
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
++ VINY LP + + +IHR+GR R G +G + + V+
Sbjct: 327 VSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVT 363
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 172 bits (435), Expect = 3e-42
Identities = 129/406 (31%), Positives = 197/406 (47%), Gaps = 76/406 (18%)
Query: 133 LSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHS 192
LS VL + GF+Q TP+Q IPL+L ++D+ A TGSGKT AF++PM+E L+
Sbjct: 14 LSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRH 73
Query: 193 AKIG-----VRAVILSPSRELAIQTHRVFKEFSKGSDLRSI---LLTGGDSLEDQFGMMM 244
+ + A+++SP+RELA Q V +F + DL + L+ GG+S+E+ +
Sbjct: 74 KETPWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLR 133
Query: 245 GN-PDVVIATPGR----FLHLKVEMNL--DLKSVEYVVFDEADRLFEMGFQEQLNELLVA 297
P +++ TPGR F ++NL +KS+E++V DEADRL ++GF+ +N +L
Sbjct: 134 RETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGY 193
Query: 298 FPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANL 357
P R+T LFSAT + + D +AGL NPVLV + + S+ R N
Sbjct: 194 LPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKA-----------SVNTPARLQNF 242
Query: 358 LYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPS 417
+++ +K E S
Sbjct: 243 YRIVEPELKFVALLE------------------------------------------FLS 260
Query: 418 EKATI-----VFVPTRHHVEYVTQLLKNC--GYLVSYIYGALNQHARKQQLYNFRAGLTS 470
AT+ VF PT VEY + L V I+G + ++ R + FR +
Sbjct: 261 SPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKM-KNKRANVVEKFRNTPQA 319
Query: 471 ILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
+L+ TDV ARG+D+P + V+ + P ++ F+HRVGRTAR GN G
Sbjct: 320 VLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEG 365
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 171 bits (434), Expect = 4e-42
Identities = 104/397 (26%), Positives = 193/397 (48%), Gaps = 53/397 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF L + +L I GF +P+ IQ++ I +D++ A++G+GKTA F + +++
Sbjct: 30 SFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQ 89
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
++ V+A++++P+RELA Q +V + ++ + GG S+ D +
Sbjct: 90 RIDHEDPH--VQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAG 147
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
VV+ TPGR + LD ++ V DEAD + GF++Q+ E+ + P + Q +L
Sbjct: 148 IHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVL 207
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SAT+PS ++D + NP+ + + + E + +I+++KDE + + L L +
Sbjct: 208 LSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVN 267
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ A ++F
Sbjct: 268 VTQA---------------------------------------------------VIFCN 276
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
TR V+ +T+ + + VS ++G ++Q R + FR+G + +L+ TD+ ARG+D+
Sbjct: 277 TRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQ 336
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
++ VINY LP + + +IHR+GR+ R G +G A + V+
Sbjct: 337 VSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVT 373
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 171 bits (433), Expect = 5e-42
Identities = 128/434 (29%), Positives = 209/434 (47%), Gaps = 59/434 (13%)
Query: 96 DDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRK 155
D E K+ E +D + + +K +F S LS +I + GF + T IQ K
Sbjct: 126 DTEAKSEEEEVEDKEEEKKLEETSIMTNK--TFESLSLSDNTYKSIKEMGFARMTQIQAK 183
Query: 156 TIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKT--HSAKIGVRAVILSPSRELAIQTH 213
IP ++ D++G ARTGSGKT AF++P +E L + + G +++ P+RELAIQ++
Sbjct: 184 AIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSY 243
Query: 214 RVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLKSVE 272
V KE K + GG+ + + ++ ++++ATPGR L HL+ K+++
Sbjct: 244 GVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLK 303
Query: 273 YVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLD 332
++V DEADR+ E F+E L ++L P RQT LFSAT + + D A+ L++PV + +D
Sbjct: 304 FLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVD 363
Query: 333 AETK--ISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXX 390
K +E LE + + R LL+LL + +K+ +
Sbjct: 364 EGRKEVTNEGLEQGYCVVPSAMR---LLFLL-----------TFLKRFQ----------- 398
Query: 391 XXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYG 450
+K +VF T ++ +L + + I G
Sbjct: 399 --------------------------GKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRG 432
Query: 451 ALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTA 510
++Q+ R F T IL+ T+VAARG+D P + ++ Y P + +IHRVGRTA
Sbjct: 433 GIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTA 492
Query: 511 RA-GNRGWAFSIVS 523
R G +G A +++
Sbjct: 493 RGEGAKGKALLVLT 506
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 171 bits (432), Expect = 7e-42
Identities = 114/385 (29%), Positives = 190/385 (48%), Gaps = 55/385 (14%)
Query: 141 ISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKI----G 196
I+++ F +PT IQ + P+ L D+VG+A+TGSGKT +++LP I + H + G
Sbjct: 109 IARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN-HQPFLERGDG 167
Query: 197 VRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGR 256
++L+P+RELA Q +V E+ + L+S + GG Q + ++ IATPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 257 FLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLV 316
+ +L+ Y+V DEADR+ +MGF+ Q+ +++ +RQTL++SAT P +
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 287
Query: 317 DFAKAGLSNPVLVRLDA-ETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQI 375
A+ L + + + + A E + N+ + E++ L+ L++E +
Sbjct: 288 QLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS--------- 338
Query: 376 KKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVT 435
E TIVFV T+ + +T
Sbjct: 339 ----------------------------------------EKENKTIVFVETKRRCDELT 358
Query: 436 QLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSL 495
+ ++ G+ I+G +Q R L F+ G IL+ TDVA+RG+D+ + VINY
Sbjct: 359 RKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDY 418
Query: 496 PGSSKIFIHRVGRTARAGNRGWAFS 520
P SS+ +IHR+GRTAR+ G A++
Sbjct: 419 PNSSEDYIHRIGRTARSTKTGTAYT 443
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 170 bits (431), Expect = 9e-42
Identities = 131/451 (29%), Positives = 205/451 (45%), Gaps = 70/451 (15%)
Query: 90 PSLELSDDEKKATNESDDDLNDYFNTTADAAAKH-----KKGS-----FASFGLSKLVLI 139
PS+ + EK+ + DL T D + KK S F F LS L
Sbjct: 30 PSVRKALKEKRLLKKRKQDLKGQEETMLDEVEQKYQEMLKKSSRTFLRFEDFPLSWRTLE 89
Query: 140 NISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL--KTHSAKIGV 197
+ + +PT IQR TI L D+VG A+TGSGKT A V+P++E L S G+
Sbjct: 90 GLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYGL 149
Query: 198 RAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRF 257
A+I+SP+RELA+QT L+ GG + + + G ++++ TPGR
Sbjct: 150 GALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRISGI-NIIVCTPGRL 208
Query: 258 L-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLV 316
L H+ + S++ +V DEADR+ +MGF +QLN ++ P RQTLLFSAT ++
Sbjct: 209 LQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQTLLFSATQTRNVK 268
Query: 317 DFAKAGLSNPVLVRL--DAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQ 374
D + ++PV V + +A +NL+ ++ I ++E + N L+ EA +
Sbjct: 269 DLCRVCTNDPVFVSVHENASAATPDNLKQSYV-IVEEEHKINALWSFIEAHR-------- 319
Query: 375 IKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYV 434
+K ++VFV + ++
Sbjct: 320 -------------------------------------------KKKSLVFVSSCKQARFL 336
Query: 435 TQLLKNC--GYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVIN 492
T+ G V ++G +NQ R + F ++L+ TDVA+RG+D + VI
Sbjct: 337 TEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQ 396
Query: 493 YSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
P +IHRVGR+AR + G + +VS
Sbjct: 397 VDCPAQIDDYIHRVGRSARMDDSGNSLLMVS 427
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 169 bits (429), Expect = 1e-41
Identities = 124/404 (30%), Positives = 199/404 (48%), Gaps = 64/404 (15%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F LS+ L I K GF T +Q +TIP +L RD++G A+TGSGKT AF++P IE
Sbjct: 44 FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 103
Query: 188 LKTHSAKI----GVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMM 243
L HS K G ++++P+RELA+Q V +E + ++ GG + + +
Sbjct: 104 L--HSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKL 161
Query: 244 MGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT-N 301
M +++IATPGR L HL+ K+++ ++ DEADR+ E+GF++++ +++ P +
Sbjct: 162 MKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNED 221
Query: 302 RQTLLFSATLPSSLVDFAKAGL-SNPVLVRLDAET--KISENLEMLFISIKKDEREANLL 358
RQ++LFSAT + + D A+ L P+ + + ET ++ LE ++ D+R L
Sbjct: 222 RQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLF 281
Query: 359 YLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSE 418
L+ +Q KK+
Sbjct: 282 SFLK---------RNQKKKI---------------------------------------- 292
Query: 419 KATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVA 478
IVF+ + + V+Y +LL V ++G Q R + F IL+ TDVA
Sbjct: 293 ---IVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVA 349
Query: 479 ARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
ARG+DIP + +I + P + +IHRVGRTAR G +G S++
Sbjct: 350 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAR-GTKGKGKSLM 392
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 169 bits (429), Expect = 1e-41
Identities = 122/400 (30%), Positives = 190/400 (47%), Gaps = 60/400 (15%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F GL ++ ++K G + TPIQ+K IP IL +D +G A+TGSGKT AF LP++E+
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 188 LKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNP 247
L + A++L+P+ ELA Q F + +R +++GG + +M P
Sbjct: 69 LS--EEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRP 126
Query: 248 DVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
+V+A PGR HL +++Y+V DEADR+ F E L+ + P RQ L
Sbjct: 127 HIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLF 186
Query: 307 FSATLPSSLVDFAKAGLSNPVLV-----RLDAETKISENLEMLFISIKKDEREANLLYLL 361
FSAT+ DF K P+ D++ E L+ ++ +R+ L+
Sbjct: 187 FSATMK----DFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLI--- 239
Query: 362 QEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKAT 421
++K +++N NAN M
Sbjct: 240 -----------EALRKYREEN---------------------------ENANVM------ 255
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
+F T+ + + ++ LKN ++G + Q R L F++ L+ TDVAARG
Sbjct: 256 -IFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVAARG 314
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSI 521
+DIP + V+N+ LP + K +IHRVGRTARAG +G + SI
Sbjct: 315 LDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISI 354
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 169 bits (428), Expect = 2e-41
Identities = 104/397 (26%), Positives = 192/397 (48%), Gaps = 53/397 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF L + +L I G+ P+ +Q + I I + RD++ A++G+GKTA F + +++
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
+ +A+ILSP+RELA+Q V +++ GG S+ + +
Sbjct: 82 SIDLSVRD--TQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYG 139
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
VV TPGR + NL ++V+ ++ DEAD L GF+EQ+ ++ P Q ++
Sbjct: 140 QHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVV 199
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SATLP +++ +NPV + + + E L+ FI+++K+E + + L L + +
Sbjct: 200 VSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLT 259
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ A ++F
Sbjct: 260 ITQA---------------------------------------------------VIFCN 268
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
+R V+++T+ ++ + V+ ++G + Q R + +FR G + +L+ TD+ ARG+D+
Sbjct: 269 SRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQ 328
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
++ VINY LP + + +IHR+GR+ R G +G A + V+
Sbjct: 329 VSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVT 365
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 169 bits (428), Expect = 2e-41
Identities = 131/398 (32%), Positives = 192/398 (47%), Gaps = 65/398 (16%)
Query: 131 FGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKT 190
+G +L N+++ GF++PTPIQR+ IP++L R+ A TGSGKT AF+ PM+ KLK
Sbjct: 146 YGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKV 205
Query: 191 HSAK---IGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNP 247
+ + G+RAVILSP+RELA QT R K+ KGS+ L+T F +
Sbjct: 206 LNCRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKLW--C 263
Query: 248 DVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL-- 305
DV+I+TP R +DL VEY+V DE+D+LFE +Q+ + +V +N +
Sbjct: 264 DVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQI-DCVVKACSNPSIIRS 322
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQ--- 362
LFSATLP S+ + A++ + + V V + + SE ++ + + E LL L Q
Sbjct: 323 LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSE--EGKLLALRQSFA 380
Query: 363 EAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATI 422
E++ PV Q K+ A E+ E
Sbjct: 381 ESLNPPVLIFVQSKE---------------------------------RAKELYDE---- 403
Query: 423 VFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGV 482
LK I+ L R+ + FRAG +L+ TDV ARG+
Sbjct: 404 ---------------LKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGM 448
Query: 483 DIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
D + VINY P S+ +IHR+GR+ RAG G A +
Sbjct: 449 DFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAIT 486
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 168 bits (425), Expect = 4e-41
Identities = 119/439 (27%), Positives = 204/439 (46%), Gaps = 65/439 (14%)
Query: 91 SLELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPT 150
S E + ++K E ++LN ++ FA L++ + F T
Sbjct: 9 SREAREKKRKEEEEEIEELNSQIEALSETV-----DHFAELPLTQPTKSALKNAHFITLT 63
Query: 151 PIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL--KTHSAKIGVRAVILSPSREL 208
IQ++ IP L+ RDI+G A+TGSGKT AF++P+IE L K ++ G+ A+++SP+REL
Sbjct: 64 EIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTREL 123
Query: 209 AIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLD 267
AIQT + + + L+ GG++ +++ + ++++ TPGR L H+ +N D
Sbjct: 124 AIQTFETLVKIGRLHSFSAGLIIGGNNYKEE-KERLSRMNILVCTPGRLLQHIDQAVNFD 182
Query: 268 LKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNP- 326
++ ++ DEADR+ +MGF+ L+ ++ + P +RQT+LFSAT S+ D A+ L NP
Sbjct: 183 TSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPD 242
Query: 327 -VLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXX 385
+ V + + NL ++++ E+ L ++ +K
Sbjct: 243 FISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKF------------------ 284
Query: 386 XXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNC--GY 443
TIVF+ + V +V + + G
Sbjct: 285 ----------------------------------KTIVFLSSCKQVRFVYETFRRMRPGI 310
Query: 444 LVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFI 503
+ +++G Q R + F + +L TD+ ARG+D P + VI P +I
Sbjct: 311 SLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYI 370
Query: 504 HRVGRTARAGNRGWAFSIV 522
HRVGRTAR G A ++
Sbjct: 371 HRVGRTARYNRSGNALLLL 389
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 168 bits (425), Expect = 4e-41
Identities = 123/397 (30%), Positives = 195/397 (48%), Gaps = 59/397 (14%)
Query: 131 FGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKT 190
+ ++ +L NI GF+ PTPIQ + IP++L R+++ A TGSGKT AF +P++ +LK
Sbjct: 62 YKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ 121
Query: 191 HSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNP-DV 249
+ K G RA+I+SP+RELA Q HR + S+G+ R ++ +FG D+
Sbjct: 122 PANK-GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDI 180
Query: 250 VIATPGRFLHLKVE--MNLDLKSVEYVVFDEADRLFE---MGFQEQLNELLVAFPTNR-Q 303
++ TP R ++L + +DL SVE++V DE+D+LFE GF++QL + +A +++ +
Sbjct: 181 LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVR 240
Query: 304 TLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQE 363
+FSAT + + K L N + V + A E +E LL++ E
Sbjct: 241 RAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQ------------ELLFVGSE 288
Query: 364 AIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIV 423
K+ +A +KK +V
Sbjct: 289 TGKL-LAMRELVKK--------------------------------------GFNPPVLV 309
Query: 424 FVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVD 483
FV + + + L G V I+ Q R +++FRAG +L+ T + ARG+D
Sbjct: 310 FVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGID 369
Query: 484 IPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
+ VINY P SS +IHR+GRT RAGN+G A +
Sbjct: 370 FKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAIT 406
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 167 bits (424), Expect = 6e-41
Identities = 107/421 (25%), Positives = 209/421 (49%), Gaps = 58/421 (13%)
Query: 103 NESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQ 162
NE + +++F + D H+ SF + GL + +L I GF +P+ IQ++ I +
Sbjct: 21 NEVLEGQDEFFTSYDDV---HE--SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
Query: 163 KRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKG 222
D++ A++G+GKTA F ++++L + I +A++L+P+RELA Q +V +
Sbjct: 76 GLDVIQQAQSGTGKTATFCSGVLQQLDF--SLIQCQALVLAPTRELAQQIEKVMRALGDY 133
Query: 223 SDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRL 282
++ GG S+ + ++ VV+ TPGR + +L +++ V DEAD +
Sbjct: 134 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEM 193
Query: 283 FEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLE 342
GF++Q+ ++ P Q +FSAT+P ++ + +S PV + + + E ++
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIK 253
Query: 343 MLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXX 402
+++++K+E + L L E + + T+S
Sbjct: 254 QFYVNVEKEEWKLETLCDLYETLAI---TQS----------------------------- 281
Query: 403 XXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLY 462
++FV TR V+++T +++ + VS +G ++Q+ R +
Sbjct: 282 -------------------VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 322
Query: 463 NFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
FR+G + +L+ TD+ ARG+D+ ++ VIN+ LP + ++HR+GR+ R G +G A + V
Sbjct: 323 EFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
Query: 523 S 523
+
Sbjct: 383 T 383
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 167 bits (423), Expect = 7e-41
Identities = 128/448 (28%), Positives = 209/448 (46%), Gaps = 59/448 (13%)
Query: 117 ADAAAKHKKGSFASFGLSKLVLINI------SKKGFRQPTPIQRKTIPLILQKRDIVGMA 170
A A+K K G FAS S L L + GF PT +Q + IP+IL RD++ A
Sbjct: 15 AKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNA 74
Query: 171 RTGSGKTAAFVLPMIEKLKTHSAKI----GVRAVILSPSRELAIQTHRVF-KEFSKGSDL 225
TG+GKT A++ P+I L+ HS K+ G A+++ P+REL +Q + K + +
Sbjct: 75 PTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWI 134
Query: 226 RSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFE 284
+ GG+ + + ++IATPGR L HLK + K++ +V+FDEAD + E
Sbjct: 135 VPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILE 194
Query: 285 MGFQEQLNEL----------------LVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVL 328
+G+ +++ ++ +V +Q LL SATL + D AK L +PV+
Sbjct: 195 LGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVM 254
Query: 329 VRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXX 388
+ LD TK+ +NL + + + E ++++ + A P++ + I Q
Sbjct: 255 IGLD-NTKLQQNLSIESPAAPDSDAEDMVIHVNKSA--NPLSEDYGIPSQLVQRYLRVPC 311
Query: 389 XXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGY----- 443
L N E + + +VF TR V++ LL +
Sbjct: 312 GARLVALLSV----------LKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSE 361
Query: 444 -------------LVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANV 490
++G++ Q R+ F+ ++L+ TDVAARG+D P + +
Sbjct: 362 TEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCI 421
Query: 491 INYSLPGSSKIFIHRVGRTARAGNRGWA 518
I Y PG + ++HRVGRTAR G +G A
Sbjct: 422 IQYDCPGEATEYVHRVGRTARIGEKGEA 449
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 167 bits (423), Expect = 7e-41
Identities = 136/434 (31%), Positives = 205/434 (46%), Gaps = 44/434 (10%)
Query: 88 KFPSLELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFR 147
K P E++ AT DL + DA A K FA F LSK +++ F
Sbjct: 38 KRPRQEINKSRLAATEAEIQDLKTKY-AEIDATAIKK---FAQFPLSKKTQKALAESKFV 93
Query: 148 QPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTH--SAKIGVRAVILSPS 205
PT +QR +I LQ +D++G A TGSGKT AF++P++E L + S GV A+I+SP+
Sbjct: 94 HPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIIISPT 153
Query: 206 RELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEM 264
RELA Q K+ K D + L+ GG +L+ + M +++I TPGR L H+
Sbjct: 154 RELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFE-RTRMDQCNILICTPGRLLQHMDENP 212
Query: 265 NLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLS 324
+ ++E +V DEADR +MGFQ+ LN ++ FP RQTLLFSAT +++ D A+ L
Sbjct: 213 LFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLARLNLK 272
Query: 325 NPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXX 384
+PV V T ++E A+ K P + +L QQ+
Sbjct: 273 DPVYVGYGGAT-------------PREEPSAS-------TKKTPNTAVLAVPELLQQSYV 312
Query: 385 XXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNC--G 442
L + + ++ IVFV + +Y+ ++ G
Sbjct: 313 VLNLEDKIT--------------MLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPG 358
Query: 443 YLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIF 502
+ +YG L+Q R +F ++ TDVA+RG+D P + V+ P +
Sbjct: 359 SPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQY 418
Query: 503 IHRVGRTARAGNRG 516
IHR GR+AR RG
Sbjct: 419 IHRAGRSARNKTRG 432
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 167 bits (422), Expect = 1e-40
Identities = 107/397 (26%), Positives = 193/397 (47%), Gaps = 56/397 (14%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F L + +L + GF +P+ IQ++ I I++ D++ A++G+GKT F + +++
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 188 LKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDS-LEDQFGMMMGN 246
+ T S K +A++L+P+RELA+Q +V + D++ GG S +ED G+ +
Sbjct: 84 IDT-SVK-APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--D 139
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
+V+ TPGR ++ + DEAD + GF+EQ+ ++ P Q +L
Sbjct: 140 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 199
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SAT+P+ +++ + NPV + + + E ++ +++++++E + L L ++I
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 259
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ A ++F
Sbjct: 260 VTQA---------------------------------------------------VIFCN 268
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
TR VE +T L+N + VS IY L Q R + FR+G + IL+ TD+ ARG+D+
Sbjct: 269 TRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 328
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
++ VINY LP + + +IHR+GR R G +G A + V+
Sbjct: 329 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 365
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 167 bits (422), Expect = 1e-40
Identities = 107/397 (26%), Positives = 193/397 (47%), Gaps = 56/397 (14%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F L + +L + GF +P+ IQ++ I I++ D++ A++G+GKT F + +++
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 188 LKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDS-LEDQFGMMMGN 246
+ T S K +A++L+P+RELA+Q +V + D++ GG S +ED G+ +
Sbjct: 84 IDT-SVK-APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--D 139
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
+V+ TPGR ++ + DEAD + GF+EQ+ ++ P Q +L
Sbjct: 140 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 199
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SAT+P+ +++ + NPV + + + E ++ +++++++E + L L ++I
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 259
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ A ++F
Sbjct: 260 VTQA---------------------------------------------------VIFCN 268
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
TR VE +T L+N + VS IY L Q R + FR+G + IL+ TD+ ARG+D+
Sbjct: 269 TRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 328
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
++ VINY LP + + +IHR+GR R G +G A + V+
Sbjct: 329 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 365
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 167 bits (422), Expect = 1e-40
Identities = 113/397 (28%), Positives = 187/397 (46%), Gaps = 56/397 (14%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F + + ++ +KG +PT +QR+ IP +L D++ +++TGSGKT AFVLP++
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 188 LKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNP 247
L + ++++P+REL+ Q F F + + LR LL GG + Q + P
Sbjct: 63 LLQKNRSF--YCLVVAPTRELSSQIAECFNMF-QATGLRVCLLVGGANFNVQANQLSKRP 119
Query: 248 DVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
VV+ TPGR H+ + + V V DEADR FE F E L ++ + RQTLL
Sbjct: 120 HVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQTLL 179
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
F+AT+ + + + L P +R + + L+ ++ + + + L+ LL+ +
Sbjct: 180 FTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELLEMSQG 239
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
M V IVFV
Sbjct: 240 MSV----------------------------------------------------IVFVS 247
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
++ L G+ ++G L+Q R++ + +F+ ++LV TD+ +RG+DI
Sbjct: 248 MCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISH 307
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+ VIN+ +P S K +IHRVGRTARAG G A ++V+
Sbjct: 308 VDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVT 344
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 166 bits (421), Expect = 1e-40
Identities = 101/398 (25%), Positives = 196/398 (48%), Gaps = 54/398 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF LS+ +L I GF +P+ IQ++ I ++ D++ A++G+GKTA F + +++
Sbjct: 33 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFG-MMMG 245
+++ +A++L+P+RELA Q +V GG ++ + + M
Sbjct: 93 QIELDLK--ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 150
Query: 246 NPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
P +++ TPGR + L K ++ V DEAD + GF++Q+ ++ +N Q +
Sbjct: 151 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAI 365
L SAT+PS +++ K + +P+ + + E E + +I+++++E + + L L E +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 366 KMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFV 425
+ A ++F+
Sbjct: 271 TITQA---------------------------------------------------VIFI 279
Query: 426 PTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIP 485
TR V+++T+ + + VS ++G ++Q R + FR+G + +L+ TD+ ARG+D+
Sbjct: 280 NTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 339
Query: 486 LLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
++ VINY LP + + +IHR+GR R G +G A ++V+
Sbjct: 340 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 377
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 166 bits (421), Expect = 1e-40
Identities = 132/431 (30%), Positives = 207/431 (47%), Gaps = 71/431 (16%)
Query: 93 ELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPI 152
E+ +++K T ES + F T A+ K ++ +L + GF T I
Sbjct: 42 EVEEEQKHQTEESSETKVSEFLTKTTFASLEGK-------VNANLLKAVQGLGFTTMTEI 94
Query: 153 QRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL-----KTHSAKIGVRAVILSPSRE 207
Q K+I +L+ +D++ A+TGSGKT AF+LP IE L K H+ G +I+SP+RE
Sbjct: 95 QAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHN---GTGVIIVSPTRE 151
Query: 208 LAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNL 266
L++QT+ V E +GS+L L+ GG + + + +++ATPGR L HL+ N
Sbjct: 152 LSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNF 211
Query: 267 DLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGL-SN 325
+++++ ++ DEADR+ ++GF+ ++ ++L P RQ++LFSAT + + K L SN
Sbjct: 212 LVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSN 271
Query: 326 PVLVRL--DAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNX 383
PV V + AE E L+ +I D+R LL L + +KK K
Sbjct: 272 PVRVSVHEKAEEATVEGLQQGYIVAPSDKR---LLLLF-----------TFLKKNK---- 313
Query: 384 XXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGY 443
K +VF + + V++ +LL
Sbjct: 314 ----------------------------------TKKVMVFFSSCNSVKFHHELLNYIDI 339
Query: 444 LVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFI 503
I+G Q R + F T IL+ TDVAARG+DIP + ++ Y + +I
Sbjct: 340 PCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREYI 399
Query: 504 HRVGRTARAGN 514
HRVGRTAR N
Sbjct: 400 HRVGRTARGTN 410
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 166 bits (420), Expect = 2e-40
Identities = 127/411 (30%), Positives = 205/411 (48%), Gaps = 55/411 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+FA L++ + N++ G+ + TPIQ+ +PL+ Q DI+ A+TGSGKTAAF+LP++
Sbjct: 342 TFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMT 401
Query: 187 KL----KTHSAKIG---VRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQ 239
+L ++A G R +IL+P+RELA Q + ++F+ + + + GG ++
Sbjct: 402 RLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 461
Query: 240 FGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAF 298
G + +++ T GR H E + L + V DEADR+ + MGF + E +V +
Sbjct: 462 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDI-ETIVNY 520
Query: 299 PT-----NRQTLLFSATLPSSLVDFAKAGL-SNPVLVRLDAETKISENLEMLFISIKKDE 352
+ NRQTL+FSAT P S+ + A+A L N V++ +D ++ + F ++ E
Sbjct: 521 DSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSE 580
Query: 353 REANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNA 412
++ LL LL I +S
Sbjct: 581 KKDKLLELLGIDIDSYTTEKSA-------------------------------------- 602
Query: 413 NEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSIL 472
E+ ++K T+VFV R + + +L + I+GA Q R + L FR G +L
Sbjct: 603 -EVYTKK-TMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVL 660
Query: 473 VVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+ T VA RG+DI + +VINY +P + +IHR+GRT R GN G A S +S
Sbjct: 661 IATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFIS 711
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 166 bits (420), Expect = 2e-40
Identities = 106/416 (25%), Positives = 204/416 (48%), Gaps = 57/416 (13%)
Query: 108 DLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIV 167
D D F T+ D + SF + GL + +L I GF +P+ IQ++ I + D++
Sbjct: 25 DGQDEFFTSYDEVHE----SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVI 80
Query: 168 GMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRS 227
A++G+GKTA F ++++L A + +A++L+P+RELA Q +V + ++
Sbjct: 81 QQAQSGTGKTATFCSGVLQQLDY--ALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKV 138
Query: 228 ILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGF 287
GG S+ + ++ VV+ TPGR + +L ++ V DEAD + GF
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGF 198
Query: 288 QEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFIS 347
++Q+ ++ P Q +FSAT+P ++ + +S PV + + + E ++ +++
Sbjct: 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVN 258
Query: 348 IKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXR 407
++K++ + L L E + + T+S
Sbjct: 259 VEKEDWKLETLCDLYETLAI---TQS---------------------------------- 281
Query: 408 RLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAG 467
++FV TR V+++T +++ + VS +G ++Q+ R + FR+G
Sbjct: 282 --------------VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG 327
Query: 468 LTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+ +L+ TD+ ARG+D+ ++ VIN+ LP + ++HR+GR+ R G +G A + V+
Sbjct: 328 SSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVT 383
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 166 bits (419), Expect = 2e-40
Identities = 118/403 (29%), Positives = 186/403 (45%), Gaps = 58/403 (14%)
Query: 130 SFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLK 189
+FG + ++ I K GF +P+PIQ + PL+L +D +G+++TGSGKT AF+LP + +
Sbjct: 88 AFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHID 147
Query: 190 THSA---------KIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQF 240
A K ++LSP+RELA Q K++S +S+ L GG S +Q
Sbjct: 148 AQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNG-YKSVCLYGGGSRPEQV 206
Query: 241 GMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT 300
G ++VIATPGR L + + L SV YVV DEADR+ +MGF+ + +L
Sbjct: 207 EACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRP 266
Query: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVL-VRLDAETKISENLEMLFISIKKDEREANLLY 359
+R L SAT P + V+ V + +++ F + D R +
Sbjct: 267 DRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVC- 325
Query: 360 LLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEK 419
E + A Q K+
Sbjct: 326 ---EIVNFLTAAHGQNYKM----------------------------------------- 341
Query: 420 ATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAA 479
I+FV ++ ++++ G ++G +Q R+ L R+G ILV TD+A+
Sbjct: 342 --IIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLAS 399
Query: 480 RGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
RG+D+P + +V+NY P + ++HRVGRT RAG +G A S +
Sbjct: 400 RGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFL 442
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 166 bits (419), Expect = 2e-40
Identities = 101/397 (25%), Positives = 197/397 (49%), Gaps = 53/397 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F L + +L I GF +P+ IQ++ I ++ RD++ A++G+GKTA F + +++
Sbjct: 17 NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQ 76
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
++ T + +A+IL+P+RELA Q RV + + S GG ++ + ++
Sbjct: 77 QIDTSIREC--QALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESG 134
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
VV+ TPGR + L + ++ V DEAD + GF++Q+ ++ P + Q +L
Sbjct: 135 CHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVIL 194
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SAT+P +++ ++ + +PV + + E E ++ ++++K++ + L L + +
Sbjct: 195 LSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLS 254
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ T+S ++F
Sbjct: 255 I---TQS------------------------------------------------VIFCN 263
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
TR V+ +TQ + + VS ++G + Q R+ + FR+G + +L+ TD+ ARG+D+
Sbjct: 264 TRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQ 323
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
++ VINY LP + + +IHR+GR R G +G A + ++
Sbjct: 324 VSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFIT 360
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 165 bits (418), Expect = 3e-40
Identities = 120/411 (29%), Positives = 192/411 (46%), Gaps = 66/411 (16%)
Query: 126 GSFASFGLSKLVLINISK-KGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPM 184
GSF K +L + K KG PT IQ + IP+ L RD++G+A TGSGKT FVLP+
Sbjct: 189 GSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPL 248
Query: 185 IEKLKTHSAKI------GVRAVILSPSRELAIQTH----RVFKEFSKGS--DLRSILLTG 232
+ K+ G +I+ PSRELA Q +F K ++R+ L G
Sbjct: 249 VMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIG 308
Query: 233 GDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLN 292
G + +Q + +V+ATPGR + + ++L+ Y+V DEADR+ +MGF++++
Sbjct: 309 GVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIK 368
Query: 293 ELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDE 352
+ F RQTLLFSAT+P + FAK+ L P++V + S N+ ++ +
Sbjct: 369 SIFYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSEN 428
Query: 353 REANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNA 412
+ +L LQ+
Sbjct: 429 KLVRVLECLQKT------------------------------------------------ 440
Query: 413 NEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSIL 472
S K I F + V+ + + L G V+ I+G +Q R + FR +L
Sbjct: 441 ----SPKVLI-FAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVL 495
Query: 473 VVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
V TDVA++G+D + +VIN+ +P + ++HR+GRT R+G +G A + ++
Sbjct: 496 VATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFIN 546
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 163 bits (413), Expect = 1e-39
Identities = 135/450 (30%), Positives = 212/450 (47%), Gaps = 63/450 (14%)
Query: 86 DSKFPSLELSDDEKKATN------ESDDDLNDYFNTTADAAAKHKKGSFASFG--LSKLV 137
++K S E S + K T ++D+D ++ + + SFAS +++
Sbjct: 131 ENKGKSEEESAETTKETENNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENT 190
Query: 138 LINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE---KLKTHSAK 194
L I + GF T IQ K+I +L+ RD++ A+TGSGKT AF++P +E KL+ +
Sbjct: 191 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR-FMTR 249
Query: 195 IGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATP 254
G +ILSP+RELA+QT V KE L+ GG + + + ++++ATP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 309
Query: 255 GRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPS 313
GR L H++ K+++ +V DEADR+ ++GF+E+L +++ PT RQT+LFSAT
Sbjct: 310 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 369
Query: 314 SLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATES 373
+ D A +IS E L++ + D+ A + L Q + P
Sbjct: 370 KVEDLA----------------RISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRF 413
Query: 374 QIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEY 433
+ L + +K +VF + V+Y
Sbjct: 414 LL---------------------------------LFTFLKKNRKKKLMVFFSSCMSVKY 440
Query: 434 VTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINY 493
+LL V I+G Q+ R + F + L+ TDVAARG+DIP + ++ Y
Sbjct: 441 HYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQY 500
Query: 494 SLPGSSKIFIHRVGRTARAGN-RGWAFSIV 522
P K +IHRVGRTAR N RG A I+
Sbjct: 501 DPPDDPKEYIHRVGRTARGLNGRGHALLIL 530
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 162 bits (411), Expect = 2e-39
Identities = 129/443 (29%), Positives = 211/443 (47%), Gaps = 65/443 (14%)
Query: 93 ELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGS----FASF--GLSKLVLINISKKGF 146
+L ++ KA N ++ F + AA + S FAS +S+ L I + GF
Sbjct: 131 KLLPNKSKAQNGKPAKDDEPFTVESSLAALDYRDSDDRSFASLKGAVSEATLRAIKEMGF 190
Query: 147 RQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLK--THSAKIGVRAVILSP 204
+ T IQ K++ +L+ RD+VG A+TGSGKT AF++P +E + + G +I+SP
Sbjct: 191 TEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVIIISP 250
Query: 205 SRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVE 263
+REL++QT V KE L+ GG + + + + ++++ATPGR L HL+
Sbjct: 251 TRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNS 310
Query: 264 MNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGL 323
+ K+++ ++ DE DR+ E+GF+E+L +++ P RQT+LFSAT + + +K L
Sbjct: 311 PDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTARIEALSKLAL 370
Query: 324 -SNPVLVRL--DAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQ 380
S P+ V + + +T + LE +I ++R L L++ K V
Sbjct: 371 KSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKV----------- 419
Query: 381 QNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKN 440
+VF + V+Y +L
Sbjct: 420 -----------------------------------------MVFFSSCMSVKYHHELFNY 438
Query: 441 CGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSK 500
V+ I+G Q R + F + IL+ TDVAARG+DIP + ++ Y P +
Sbjct: 439 IDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPR 498
Query: 501 IFIHRVGRTAR-AGNRGWAFSIV 522
+IHRVGRTAR +G G A ++
Sbjct: 499 EYIHRVGRTARGSGTSGHALLLM 521
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 162 bits (410), Expect = 2e-39
Identities = 99/398 (24%), Positives = 195/398 (48%), Gaps = 54/398 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F L + +L I GF +P+ IQ++ I ++ D++ A++G+GKTA F + +++
Sbjct: 34 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
+L+ + +A++L+P+RELA Q +V GG ++ ++ +
Sbjct: 94 QLEIEFKE--TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAE 151
Query: 247 -PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
P +V+ TPGR + L K ++ V DEAD + GF++Q+ E+ T+ Q +
Sbjct: 152 APHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 211
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAI 365
SAT+P+ +++ K + +P+ + + E E ++ +I+++++E + + L L E +
Sbjct: 212 FASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 366 KMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFV 425
+ A ++F+
Sbjct: 272 TITQA---------------------------------------------------VIFL 280
Query: 426 PTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIP 485
TR V+++T+ + + VS ++G ++Q R + FR+G + +L+ TD+ ARG+D+
Sbjct: 281 NTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 340
Query: 486 LLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
++ VINY LP + + +IHR+GR R G +G A + V+
Sbjct: 341 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVT 378
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 162 bits (409), Expect = 3e-39
Identities = 99/397 (24%), Positives = 197/397 (48%), Gaps = 53/397 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF + L +L I GF +P+ IQ++ I + D++ A++G+GKTA F +++
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 101
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
+L + + +A++L+P+RELA Q +V + +++ GG S+ + ++
Sbjct: 102 QLDI--SLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSG 159
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
VV+ TPGR L +L +++ V DEAD + GF++Q+ ++ P+ Q +
Sbjct: 160 VHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 219
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
FSAT+P ++ + ++ PV + + + E ++ ++++ K+E + L L E +
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 279
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ T+S ++FV
Sbjct: 280 I---TQS------------------------------------------------VIFVN 288
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
TR V+++T +++ + VS +G ++Q+ R + FR+G + +L+ TD+ ARG+D+
Sbjct: 289 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 348
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
++ VIN+ LP + ++HR+GR+ R G +G A + ++
Sbjct: 349 VSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMT 385
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 161 bits (408), Expect = 4e-39
Identities = 123/410 (30%), Positives = 197/410 (48%), Gaps = 53/410 (12%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F+ L + + N++ G+ + TPIQ+ T+PLI Q DI+ A+TGSGKTAAF+LP++
Sbjct: 553 TFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMA 612
Query: 187 KL----KTHSAKIG---VRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQ 239
+L ++A G R +IL+P+REL Q + ++F+ + + + GG ++
Sbjct: 613 RLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYN 672
Query: 240 FGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE-MGFQEQLNELL--- 295
G + +++ T GR H E + L + V DEADR+ + MGF ++ ++
Sbjct: 673 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYE 732
Query: 296 -VAFPTNRQTLLFSATLPSSLVDFAKAGLSNP-VLVRLDAETKISENLEMLFISIKKDER 353
+ NRQTL+FSAT P S+ + A+ L +++ +D ++ + F + E+
Sbjct: 733 SMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEK 792
Query: 354 EANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNAN 413
+ LL +L I TE N
Sbjct: 793 KDKLLEILGIDID-SYTTEK---------------------------------------N 812
Query: 414 EMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILV 473
K TIVFV R + + +L + I+GA Q R + L FR G +L+
Sbjct: 813 SEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLI 872
Query: 474 VTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
T VA RG+DI + +VINY +P + +IHR+GRT R GN G A S +S
Sbjct: 873 ATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS 922
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 161 bits (407), Expect = 5e-39
Identities = 99/376 (26%), Positives = 184/376 (48%), Gaps = 54/376 (14%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F GL + +L I GF +P+ IQ++ IP IL+ RD++ A++G+GKTA F + +++
Sbjct: 27 TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 86
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
L T + +A+ILSP+RELA+Q +V +++ GG +L + +
Sbjct: 87 SLDTQVRE--TQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYG 144
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
VV TPGR + NL ++++ +V DEAD + GF+EQL ++ P Q +L
Sbjct: 145 QHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SATLP +++ +++P+ + + + E ++ F+++ ++E + + L L + +
Sbjct: 205 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLT 264
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ A ++F
Sbjct: 265 ITQA---------------------------------------------------VLFCN 273
Query: 427 TRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
TR V+++T +K + VS ++G + Q R + + FRAG T +L+ TDV ARG+D+P
Sbjct: 274 TRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQ 333
Query: 487 LANVINYSLPGSSKIF 502
+ +++++ + IF
Sbjct: 334 V-SLVHFRFSAKNSIF 348
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 158 bits (400), Expect = 3e-38
Identities = 115/381 (30%), Positives = 189/381 (49%), Gaps = 54/381 (14%)
Query: 140 NISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRA 199
N+ K+ + T IQR IP I KRD++ A TGSGKT A++ P+++KL+ H G RA
Sbjct: 60 NLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPG-GYRA 118
Query: 200 VILSPSRELAIQTHRVFKEFSKGSDLRSILLT-GGDSLEDQFGMMMGNPDVVIATPGRFL 258
+I++P+REL Q +R ++ S G+ L+ I L+ + ++++ + D+ I TP R +
Sbjct: 119 IIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLV 178
Query: 259 HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT-NRQTLLFSATLPSSLVD 317
++ L + VE+ V DEADRLFE GF EQ + +L A + N LFSAT+PS + +
Sbjct: 179 QA-IQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEE 237
Query: 318 FAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKK 377
AK +P+ + + + +++++ LL++ + K+ +
Sbjct: 238 LAKVVTVDPIRIIVGLKDAATDSIDQ------------RLLFVGSDTSKIVIL------- 278
Query: 378 LKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQL 437
R++ + E+ + ++FV + +
Sbjct: 279 -----------------------------RQMISNGEL--KPRVVIFVQDIERAKALYTE 307
Query: 438 LKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPG 497
L V I+G L Q R++ L FR G +L+ TD+ ARG+D + VIN+ P
Sbjct: 308 LLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQ 367
Query: 498 SSKIFIHRVGRTARAGNRGWA 518
S +IHR+GRT RAGN G A
Sbjct: 368 SVHSYIHRIGRTGRAGNTGQA 388
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 158 bits (400), Expect = 3e-38
Identities = 107/392 (27%), Positives = 204/392 (51%), Gaps = 57/392 (14%)
Query: 137 VLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTH----S 192
+L +I + G +PTPIQ + P+ILQ D++ +A+TG+GKT ++++P L +
Sbjct: 233 LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 292
Query: 193 AKIGVRAVILSPSRELAIQTHRVFKEFS-KGSDLRSILLTGGDSLEDQFGMMMGNPDVVI 251
+ G ++L+P+RELA+ ++S KG L+SI + GG + Q + D++I
Sbjct: 293 QRNGPGMLVLTPTRELALHVEAECSKYSYKG--LKSICIYGGRNRNGQIEDISKGVDIII 350
Query: 252 ATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATL 311
ATPGR L++ +++L+S+ Y+V DEAD++ +M F+ Q+ ++L+ +RQT++ SAT
Sbjct: 351 ATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 410
Query: 312 PSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVAT 371
P ++ A + L +P++V + NL ++ ++ K N++ V T
Sbjct: 411 PDTVRQLALSYLKDPMIVYVG-------NLNLVAVNTVKQ----NII----------VTT 449
Query: 372 ESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHV 431
E + + L Q+ N P++K I+FV +H
Sbjct: 450 EKEKRALTQEFV----------------------------ENMSPNDK-VIMFVSQKHIA 480
Query: 432 EYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVI 491
+ ++ G ++G Q +++ + +F++G IL+ TD+ +RG+D+ + +V
Sbjct: 481 DDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVY 540
Query: 492 NYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
NY P + +++HRVG R G G + ++++
Sbjct: 541 NYDFPRNIDVYVHRVGYIGRTGKTGTSVTLIT 572
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 157 bits (398), Expect = 6e-38
Identities = 122/410 (29%), Positives = 197/410 (47%), Gaps = 53/410 (12%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPM-- 184
SF+ + + + N+ + G+ + TPIQ+ T+PL+ +DI+ A+TGSGKTAAF+LP+
Sbjct: 299 SFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMS 358
Query: 185 ---IEKLKTHSAKIGV--RAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQ 239
+EK + A+ G R +IL+P+RELA Q + ++FS S + + GG ++
Sbjct: 359 RLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYN 418
Query: 240 FGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE-MGFQEQLNELL--V 296
+M +++ T GR H + + L Y+V DEADR+ + MGF ++ +++
Sbjct: 419 KSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYK 478
Query: 297 AFPTN--RQTLLFSATLPSSLVDFAKAGLSNP-VLVRLDAETKISENLEMLFISIKKDER 353
P N RQT++FSAT PSS+ + A+ L ++ +D ++ + F + +
Sbjct: 479 NMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSK 538
Query: 354 EANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNAN 413
LL LL I + T + N
Sbjct: 539 VDKLLKLL--GIDIDTYTTEK--------------------------------------N 558
Query: 414 EMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILV 473
K TIVFV + + + ++ I+GA Q R L FR+G +L+
Sbjct: 559 SDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGAKPVLI 618
Query: 474 VTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
T V RG+DI + +VINY +P + +IHR+GRT R GN G A S +S
Sbjct: 619 ATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFIS 668
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 157 bits (397), Expect = 8e-38
Identities = 126/446 (28%), Positives = 210/446 (46%), Gaps = 80/446 (17%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLIL-QKRDIVGMARTGSGKTAAFVLPMI 185
+++S L L++ +I + F++PT IQ+ + Q +D++G A TGSGKT AF LP++
Sbjct: 192 AWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 251
Query: 186 EKLKTHSAKIG------------------VRAVILSPSRELAIQTHRVFKEFSKGSDLRS 227
++L K+G +RA+I++P+RELA+Q + +K ++
Sbjct: 252 QRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKV 311
Query: 228 ILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKV--EMNL-DLKSVEYVVFDEADRLFE 284
+ + GG E Q + P++V+ATPGR L E +L +L S+ + V DEADR+ E
Sbjct: 312 VPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVE 371
Query: 285 MGFQEQLNELLVAFPT------------------------NRQTLLFSATLPSSLVDFAK 320
G +L +L P RQT +FSAT+ S DF K
Sbjct: 372 RGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALS-SDFRK 430
Query: 321 AGLSNPVLVRLDAETKISENLEMLFISIKKDER----EANLLYLLQEAIKMPVATESQIK 376
L R +++K S + E+ I + + ++ L +I P ES IK
Sbjct: 431 K------LKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIK 484
Query: 377 KLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQ 436
+++ L + + TIVF + + +++
Sbjct: 485 CEEKEKDAY-----------------------LYYILSVHGQGRTIVFCTSVTDLRHISG 521
Query: 437 LLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLP 496
LLK G V ++ + Q AR + + FRA IL+ TD+ ARG+DI + +I+Y LP
Sbjct: 522 LLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLP 581
Query: 497 GSSKIFIHRVGRTARAGNRGWAFSIV 522
S+++++HR GRTARA G + +++
Sbjct: 582 HSAEVYVHRCGRTARAFADGCSIALI 607
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 156 bits (395), Expect = 1e-37
Identities = 118/438 (26%), Positives = 199/438 (44%), Gaps = 68/438 (15%)
Query: 94 LSDDEKKATNESDDDLNDYFNTTADAAAKH--KKGSFASFGLSKLVLINISKKGFRQPTP 151
L+ ++K + +D+ + T D K F +S L + + F + T
Sbjct: 7 LNTTQRKTLRQKEDEYIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTE 66
Query: 152 IQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL--KTHSAKIGVRAVILSPSRELA 209
IQ +IP+ LQ D++ A+TGSGKT AF++P+IEKL + + G+ A+I+SP+RELA
Sbjct: 67 IQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELA 126
Query: 210 IQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDL 268
+Q + V + + + L+ GG ++ + + +++I TPGR L HL + L+
Sbjct: 127 MQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERI-SRINILIGTPGRILQHLDQAVGLNT 185
Query: 269 KSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVL 328
+++ +V DEADR +MGF++ L+ ++ +RQTLLFSAT S+ D A+ L++
Sbjct: 186 SNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKT 245
Query: 329 V--------RLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQ 380
V ++ E E L+ +I + ++ L ++ +K +
Sbjct: 246 VGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDILFSFIKSHLKCKM----------- 294
Query: 381 QNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKN 440
IVF+ + V +V + +
Sbjct: 295 -----------------------------------------IVFLSSSKQVHFVYETFRK 313
Query: 441 C--GYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGS 498
G + +++G Q AR + L F L TDV ARG+D P + V+ P
Sbjct: 314 MQPGISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPED 373
Query: 499 SKIFIHRVGRTARAGNRG 516
+IHRVGR AR G +G
Sbjct: 374 VDTYIHRVGRCARYGKKG 391
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 156 bits (395), Expect = 1e-37
Identities = 91/239 (38%), Positives = 133/239 (55%), Gaps = 6/239 (2%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
FA GLS ++ + G ++PTP+Q IP IL+ RD +G A+TGSGKTAAFVLP+++K
Sbjct: 4 FAELGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 188 LKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNP 247
L G+ ++L+P+RELA Q F+ K L+ ++ GG + Q + P
Sbjct: 64 LS--EDPYGIFCLVLTPTRELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Query: 248 DVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMG---FQEQLNELLVAFPTNRQ 303
VVIATPGR HL+ +K + ++V DEADRL E G F L +L A P RQ
Sbjct: 122 HVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 304 TLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQ 362
TLLFSATL +L + + P A E L+ ++ + + ++A L++L+Q
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQ 240
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 156 bits (394), Expect = 2e-37
Identities = 135/531 (25%), Positives = 239/531 (44%), Gaps = 100/531 (18%)
Query: 84 IVDSKFPSLELSDDEKKATNESDDDL-NDYFNTTADAAAKHKK--------------GSF 128
+ D + + E K+ + +DD L T +A+A K GSF
Sbjct: 61 VEDDREKTTENDSPNKEEKSGNDDGLIKPVITNTVEASALRKSYKGNVSGIDIPLPIGSF 120
Query: 129 ----ASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPM 184
+ F K +L N+ + GF +PTPIQ + IP+ L RD++ TGSGKT AF++P+
Sbjct: 121 EDLISRFSFDKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPL 180
Query: 185 IEKLKTHSAKIGVRAVILSPSRELAIQ--------THRVFKEFSKGSDLRSILLTGGDSL 236
++++ G++ +I+SP++ELA Q ++++F E + + + + G L
Sbjct: 181 VQQIIDDKQTAGLKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKL 240
Query: 237 EDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLV 296
+++ + D++I+TP R + + LDL V++++FDEAD+LF+ F EQ +++L
Sbjct: 241 KNKV-VSDKKYDIIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQSDDILS 299
Query: 297 AF--PTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDERE 354
A P+ R+ + FSAT+PS++ + A++ + +PV V + + + N+ E
Sbjct: 300 ACREPSLRKAM-FSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNI------------E 346
Query: 355 ANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANE 414
L++ E K+ I++L Q+
Sbjct: 347 QKLIFCGNEEGKLIA-----IRQLVQEGEF------------------------------ 371
Query: 415 MPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVV 474
+ I+F+ + + + L V I+ R + + F+ G L+
Sbjct: 372 ---KPPIIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLIC 428
Query: 475 TDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXX 534
TDV ARG+D + VINY +PGSS+ ++HR+GRT R G G A + +
Sbjct: 429 TDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAI---- 484
Query: 535 XXXGKKILLTPMYESSCQI----------LRKKAESEGNNNFTDPKVSYTT 575
K ++ M +S C++ RK+ ES N + TT
Sbjct: 485 -----KPIINVMKQSGCEVSEWMDKMAKMTRKEKESIKNGKAHKERKQITT 530
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 156 bits (394), Expect = 2e-37
Identities = 90/226 (39%), Positives = 131/226 (57%), Gaps = 4/226 (1%)
Query: 108 DLNDYFNTTADAAAKHKKGS-FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDI 166
DL N AA + GS FA FG + ++ I K + QPTPIQ + +P+ L RD+
Sbjct: 115 DLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDM 174
Query: 167 VGMARTGSGKTAAFVLPMIEKL---KTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGS 223
+G+A+TGSGKTAAF+ PM+ + K G AVI+ P+REL Q H K F K
Sbjct: 175 IGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAY 234
Query: 224 DLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF 283
+LRS+ + GG S+ +Q + ++V+ TPGR + + +L+ V Y+VFDEADR+F
Sbjct: 235 NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMF 294
Query: 284 EMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLV 329
+MGF+ Q+ + +RQTLLFSAT + A+ L +P+ V
Sbjct: 295 DMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRV 340
Score = 76.6 bits (187), Expect = 2e-13
Identities = 38/110 (34%), Positives = 65/110 (58%)
Query: 414 EMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILV 473
E S + ++FV + + E + LK G+ + ++G ++Q R + + +F+ +LV
Sbjct: 375 EFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLV 434
Query: 474 VTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
TDVAARG+DIP + VINY + HR+GRT RAG +G A+++++
Sbjct: 435 ATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLT 484
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 155 bits (393), Expect = 2e-37
Identities = 114/380 (30%), Positives = 185/380 (48%), Gaps = 54/380 (14%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F L +++ N+ K G+ PTPIQ + IP+ L RDI+ A TGSGKTAAF+LP+I +
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264
Query: 188 LKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSD-LRSILLTGGDSLEDQFGMMMGN 246
S A+IL+P+RELAIQ R KE G ++++LL GG L Q + +
Sbjct: 265 ALFESKTPS--ALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQH 322
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
V+IATPGR L + + +++L V+ VV DEAD + +MGFQ+Q+ ++L P + QT+L
Sbjct: 323 VKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTIL 382
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIK 366
SAT+P+S+ A L NPV + + N+ + + ++ ++ L +L +
Sbjct: 383 VSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILND--- 439
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
KKL + +VFV
Sbjct: 440 ---------KKL--------------------------------------FKPPVLVFVD 452
Query: 427 TRHHVEYVTQLLKNCGYLVSY-IYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIP 485
+ + +++ ++ L S I+ +Q RK L G ++V T V RG+D+
Sbjct: 453 CKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLI 512
Query: 486 LLANVINYSLPGSSKIFIHR 505
+ V+N+ +P S ++H+
Sbjct: 513 SVRLVVNFDMPSSMDEYVHQ 532
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 154 bits (390), Expect = 5e-37
Identities = 119/445 (26%), Positives = 205/445 (45%), Gaps = 66/445 (14%)
Query: 92 LELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGS--------FASFGLSKLVLINISK 143
++ ++E+ ++ ++ +T + KKGS F F L +L I+
Sbjct: 9 IDYEEEEELVQDQPAQEITPAADTAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITD 68
Query: 144 KGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILS 203
GF P+ +Q+ IP + D++ A++G GKTA FVL +++++ ++ V ++L
Sbjct: 69 SGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSV--LVLC 126
Query: 204 PSRELAIQTHRVFKEFSKG-SDLRSILLTGGDSLE---DQFGMMMGNPDVVIATPGRFLH 259
+RELA Q + FSK D+R+ + GG +++ + F +P +V+ATPGR
Sbjct: 127 HTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNA 186
Query: 260 LKVEMNLDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDF 318
L E L + SV++ V DE D+L E + + + E+ A P +Q ++FSATL + +
Sbjct: 187 LVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPI 246
Query: 319 AKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKL 378
K + NP+ + +D ETK++ L L Q +K+ E + K
Sbjct: 247 CKKFMQNPLEIYVDDETKLT------------------LHGLQQHYVKL----EEKAKN- 283
Query: 379 KQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLL 438
R++ + + ++FV + + +LL
Sbjct: 284 ----------------------------RKINDLLDSLEFNQVVIFVKSVSRANELDRLL 315
Query: 439 KNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGS 498
+ C + I+G L Q R ++ F+ I V TDV RG+DI + VINY +P S
Sbjct: 316 RECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDS 375
Query: 499 SKIFIHRVGRTARAGNRGWAFSIVS 523
++HRVGR R G +G A + S
Sbjct: 376 PDSYLHRVGRAGRFGTKGLAITFSS 400
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 154 bits (390), Expect = 5e-37
Identities = 120/433 (27%), Positives = 196/433 (44%), Gaps = 63/433 (14%)
Query: 170 ARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSIL 229
ARTG+GKT AF +P+++KL G+ A+IL+P+RELA Q F K L+ +
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDP--YGIYALILTPTRELAFQIAEQFTALGKPITLKCSV 247
Query: 230 LTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLD-----LKSVEYVVFDEADRLFE 284
+ GG SL Q + P VV+ATPGR L +E + D K +++ V DEADR+ E
Sbjct: 248 IVGGRSLIHQARELSERPHVVVATPGRLADL-IESDPDTIAKVFKKIQFFVLDEADRMLE 306
Query: 285 MGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEML 344
+ +QL + + RQTLL SAT+ +++ + P
Sbjct: 307 GQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKP-----------------Y 349
Query: 345 FISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXX 404
F K + E+ + L Q+ + PVA +
Sbjct: 350 FFEDKGKDDESTVDRLEQKYVVCPVAVKD-----------------------------AY 380
Query: 405 XXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNF 464
+ N +E + + ++F T + + + + G+ V ++ + Q R L F
Sbjct: 381 LVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAF 440
Query: 465 RAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSX 524
R+ +++ TDVA+RG+DIP + V+N+++P K +IHRVGR+ARAG G A S V+
Sbjct: 441 RSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQ 500
Query: 525 XXXXXXXXXXXXXGKK---ILLTPMYESS--CQILRKKAESE---GNNNFTDPK-VSYTT 575
GKK + ++P + + Q+L K E+E N F + K ++
Sbjct: 501 YDVELLQAVEQVIGKKLDELKVSPKHVTKYVTQVLVAKKEAELKLENQKFGEKKEINRRK 560
Query: 576 RMVLGACPRSEID 588
+++ E D
Sbjct: 561 ELLMSGMDEDEAD 573
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 154 bits (390), Expect = 5e-37
Identities = 119/440 (27%), Positives = 202/440 (45%), Gaps = 63/440 (14%)
Query: 93 ELSDDEKKATNESDDDLNDYFNTTADAAAK------HKKGSFASFGLSKLVLINISKKGF 146
E ++E E D+ + D N A K H G F F L +L I GF
Sbjct: 8 EAYEEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSG-FRDFLLKPELLRAIVDSGF 66
Query: 147 RQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSR 206
P+ +Q + IP + D++ A++G GKTA FVL +++++ + V A++L +R
Sbjct: 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQ--VSALVLCHTR 124
Query: 207 ELAIQTHRVFKEFSKG-SDLRSILLTGGDSLEDQFGMMMGN-PDVVIATPGRFLHLKVEM 264
ELA Q F FS D + + GG +++ ++ P +V+ TPGR L L E
Sbjct: 125 ELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREK 184
Query: 265 NLDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGL 323
+L LK+V + + DE D++ E + + + E+ P ++Q ++FSATL + K +
Sbjct: 185 DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244
Query: 324 SNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNX 383
+P+ + +D E K++ L L+Q IK+ S+++K
Sbjct: 245 QDPMEIYVDDEAKLT------------------LHGLVQHYIKL-----SEMEK------ 275
Query: 384 XXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGY 443
R+L + + ++FV + + +LL C +
Sbjct: 276 ----------------------TRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF 313
Query: 444 LVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFI 503
I+ ++Q R + +F+ G ILV TD+ RG+DI + VINY +P S+ ++
Sbjct: 314 PSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 373
Query: 504 HRVGRTARAGNRGWAFSIVS 523
HRVGR R G +G A + V+
Sbjct: 374 HRVGRAGRFGTKGLAITFVA 393
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 154 bits (389), Expect = 6e-37
Identities = 119/440 (27%), Positives = 202/440 (45%), Gaps = 63/440 (14%)
Query: 93 ELSDDEKKATNESDDDLNDYFNTTADAAAK------HKKGSFASFGLSKLVLINISKKGF 146
E ++E E D+ + D N A K H G F F L +L I GF
Sbjct: 8 EAYEEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSG-FRDFLLKPELLRAIVDSGF 66
Query: 147 RQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSR 206
P+ +Q + IP + D++ A++G GKTA FVL +++++ + V A++L +R
Sbjct: 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQ--VSALVLCHTR 124
Query: 207 ELAIQTHRVFKEFSKG-SDLRSILLTGGDSLEDQFGMMMGN-PDVVIATPGRFLHLKVEM 264
ELA Q F FS D + + GG +++ ++ P +V+ TPGR L L E
Sbjct: 125 ELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREK 184
Query: 265 NLDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGL 323
+L LK+V + + DE D++ E + + + E+ P ++Q ++FSATL + K +
Sbjct: 185 DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244
Query: 324 SNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNX 383
+P+ + +D E K++ L L+Q IK+ S+++K
Sbjct: 245 QDPMEIYVDDEAKLT------------------LHGLVQHYIKL-----SEMEK------ 275
Query: 384 XXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGY 443
R+L + + ++FV + + +LL C +
Sbjct: 276 ----------------------NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF 313
Query: 444 LVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFI 503
I+ ++Q R + +F+ G ILV TD+ RG+DI + VINY +P S+ ++
Sbjct: 314 PSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 373
Query: 504 HRVGRTARAGNRGWAFSIVS 523
HRVGR R G +G A + V+
Sbjct: 374 HRVGRAGRFGTKGLAITFVA 393
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 153 bits (387), Expect = 1e-36
Identities = 114/413 (27%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 130 SFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLK 189
S GL ++L I G+ P+P+Q +IP +L ++++ ++ G+GKTA++++PM+ +
Sbjct: 112 SLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNMI- 170
Query: 190 THSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDV 249
+S+++ ++ +IL P RELA+Q R K S+G+ + S + GG S++D + V
Sbjct: 171 -NSSELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHV 229
Query: 250 VIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSA 309
++ TPGR + L + L +VFDEAD+L ++ F E + +LL P +Q LL+SA
Sbjct: 230 MVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDLLPREKQMLLYSA 289
Query: 310 TLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANL-LYLLQEAIKMP 368
T P + F + + NP+ + L E ++ + +K E+ L LL+ +I
Sbjct: 290 TFPYFVTGFIRRYMKNPLCINLMKEL-APVGVKQFYTYVKPSEKLLCLKSLLLRLSINQC 348
Query: 369 VATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTR 428
V + IK + E+ + K T + +P+
Sbjct: 349 VIFCNSIKTV-----------------------------------ELLAMKITEMGLPS- 372
Query: 429 HHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLA 488
Y + + + Q R +NF G ILV TD+ RGVD P
Sbjct: 373 --------------YFI---HSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNTN 415
Query: 489 NVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXXXXXGKKI 541
VIN+ + S + ++HR+GR R G G A S+V+ GK+I
Sbjct: 416 YVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMDIEAKLGKEI 468
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 152 bits (384), Expect = 2e-36
Identities = 170/660 (25%), Positives = 280/660 (41%), Gaps = 110/660 (16%)
Query: 131 FGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKT 190
F L + + GF TP+Q TIP++ +D+V + TGSGKTAAFV+P++EK+
Sbjct: 12 FSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVK 71
Query: 191 HSA------KIGVRAVILSPSRELAIQTHRVFKEFSKG--SDLRSI---LLTGGDSL--- 236
A K ++I++P+REL+ Q V F + SDL I LL G +
Sbjct: 72 EEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVR 131
Query: 237 EDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLV 296
+D + P ++I TPGR L + + VV DEADRL +M F + ++L
Sbjct: 132 DDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILR 191
Query: 297 AFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREAN 356
P R+T LFSAT+ S+ D K GL NPV + ++++ + +L++ + + E+
Sbjct: 192 LLPKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQL 251
Query: 357 LLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMP 416
L+ +L N
Sbjct: 252 LVSIL---------------------------------------------------NNYK 260
Query: 417 SEKATIVFVPTRHHVEYVTQLLKNCG---YLVSYI-----YGALNQHARKQQLYNFRAGL 468
+K + F PT V Y ++ G LV+ + +G L AR + L F L
Sbjct: 261 FKKCIVYF-PTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDSL 319
Query: 469 T-SILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXX 527
+ S+L TDVAARG+DIP + VI P ++ +F+HR GRT RA G A + ++
Sbjct: 320 SNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLN---- 375
Query: 528 XXXXXXXXXXGKKILLTP-MYESSCQILRKKAESEG-NNNFTDPKVSYTTRMVLGACPRS 585
G++ P M + ++ E +G NF + ++ R
Sbjct: 376 ---------EGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILE------DRD 420
Query: 586 EIDGMGDLYSNMIK--------SDFELNTVKGVALKAEKLYFRTRTPASAESMKRSKEIL 637
D Y IK S F L ++ V + KLY R P E K
Sbjct: 421 RFDKGVKAYVAFIKYYSNHSATSIFRLQSLDYVGI--AKLYGLFRLPRMPEITKYLATEK 478
Query: 638 RSGWDEQNIYFGKNAEKEKLDFLAKLQHRNNKETVFEFARNPDDEMSVLMKRRRRQIAPI 697
+ G N ++ + K + + +ET+ + +D+ + + +++ +A
Sbjct: 479 QEGIFPGNWLVDPPVNMDEYKYKDKKREKERQETLKNISL-INDKKKLKSELKKKNLAWS 537
Query: 698 QRKAKERQELLEKERMIGLRHSIEDEILKGEDNEVGYSVPDEVLKEFEDADVLLEEQENI 757
+ + ++L KE+M R +IE+E LK E E+ + +E +KE VL +++ +
Sbjct: 538 DKTLTKERKLERKEKMSLKRKAIEEE-LKAE--ELDENAEEERIKEDWKEIVLQNKRKKV 594
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 152 bits (384), Expect = 2e-36
Identities = 114/390 (29%), Positives = 189/390 (48%), Gaps = 63/390 (16%)
Query: 140 NISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRA 199
N+ + F PTPIQ + +P++LQ+R ++ A TGSGKT AF+ P+I L+ H G+RA
Sbjct: 133 NLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTT-GLRA 191
Query: 200 VILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNP-DVVIATPGR-- 256
++L+P+RELA Q +R E ++ + LR+ ++ + + G D++++TP R
Sbjct: 192 LVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVR 251
Query: 257 FLHLKVEMNLDLKSVEYVVFDEADRLFEMG---FQEQLNELLVAFPTNRQTL-LFSATLP 312
FL + LDL VE+ V DEADRL E G F+EQL+++ A + + FSAT
Sbjct: 252 FLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTKCVAFFSATYT 311
Query: 313 SSLVDFAKAGLSNPVLVRLDAETKISENL--EMLFISIKKDEREANLLYLLQEAIKMPVA 370
+ +A L N V + + + +E + E+LF+ + + A + L+++ ++ PV
Sbjct: 312 VPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVA-IRDLVRQGLQPPV- 369
Query: 371 TESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHH 430
+VFV ++
Sbjct: 370 ---------------------------------------------------LVFVQSKER 378
Query: 431 VEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANV 490
+ + + L G V I+ +QH R + FR G +L+ T++ RG+D + V
Sbjct: 379 AKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTELMGRGIDFKGVNLV 438
Query: 491 INYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
INY P ++ +IHR+GRT RAG G A +
Sbjct: 439 INYDFPPTTISYIHRIGRTGRAGRPGRAIT 468
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 152 bits (383), Expect = 3e-36
Identities = 124/443 (27%), Positives = 203/443 (44%), Gaps = 74/443 (16%)
Query: 97 DEKKATNESDDDLNDYFNTT---ADAAAK-----HKKGSFASFGLSKLVLINISKKGFRQ 148
+EKK E + ++ + AD A + SF GL+ +L I F++
Sbjct: 55 EEKKTKQEDSNLISSEYEVKVKLADIQADPNSPLYSAKSFDELGLAPELLKGIYAMKFQK 114
Query: 149 PTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSR 206
P+ IQ + +PL+L R+++ +++G+GKTAAF L M+ ++ A +A+ L+PSR
Sbjct: 115 PSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDAS--PQAICLAPSR 172
Query: 207 ELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNL 266
ELA QT V +E K + + S L+ DS E + N V++ TPG L L +
Sbjct: 173 ELARQTLEVVQEMGKFTKITSQLIV-PDSFEKNKQI---NAQVIVGTPGTVLDLMRRKLM 228
Query: 267 DLKSVEYVVFDEADRLF-EMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSN 325
L+ ++ V DEAD + + G +Q + P + Q +LFSAT ++ +AK + N
Sbjct: 229 QLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPN 288
Query: 326 PVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXX 385
+ L + ++ L++ K EA K V TE
Sbjct: 289 ANTLELQTNEVNVDAIKQLYMDCK------------NEADKFDVLTE------------- 323
Query: 386 XXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLV 445
+ + ++I+FV T+ + LK+ G+ V
Sbjct: 324 --------------------------LYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEV 357
Query: 446 SYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLP------GSS 499
S ++G L R + + +FR G + +L+ T+V ARG+DIP ++ V+NY LP
Sbjct: 358 SILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADP 417
Query: 500 KIFIHRVGRTARAGNRGWAFSIV 522
+IHR+GRT R G +G A S V
Sbjct: 418 ATYIHRIGRTGRFGRKGVAISFV 440
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 150 bits (378), Expect = 1e-35
Identities = 88/249 (35%), Positives = 134/249 (53%), Gaps = 12/249 (4%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMI- 185
SF K +L ++ KG + PTPIQ + +P +L RD++G+A TGSGKT FVLP+I
Sbjct: 178 SFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIM 237
Query: 186 -----EKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKG------SDLRSILLTGGD 234
E G +I+ PSRELA QTH + + +SK ++RS L GG
Sbjct: 238 FALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGL 297
Query: 235 SLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNEL 294
+ + ++ +V+ATPGR + + + L L Y+ DEADR+ +MGF+E + +
Sbjct: 298 PVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTI 357
Query: 295 LVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDERE 354
F RQTLLFSAT+P + +FA++ L PV + + S N+ +K++ +
Sbjct: 358 FSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKV 417
Query: 355 ANLLYLLQE 363
LL LQ+
Sbjct: 418 VYLLDCLQK 426
Score = 70.9 bits (172), Expect = 9e-12
Identities = 32/102 (31%), Positives = 60/102 (58%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
++F + V+ + + L G I+G +Q R + + +R G +LV TDVA++G
Sbjct: 432 LIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKG 491
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+D P + +VINY +P + ++HR+GRT R+ +G A ++++
Sbjct: 492 LDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLIN 533
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 149 bits (376), Expect = 2e-35
Identities = 84/254 (33%), Positives = 143/254 (56%), Gaps = 9/254 (3%)
Query: 132 GLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTH 191
GL+ +L + K + +P PIQ + +P+I+ RD +G+A+TGSGKT FVLPM+ +K
Sbjct: 535 GLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQ 594
Query: 192 ---SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPD 248
A G ++++P+REL Q H ++FSK +R + + GG + Q + +
Sbjct: 595 PPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE 654
Query: 249 VVIATPGRFLHLKVEMN---LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
+V+ TPGR + + + +L+ V ++V DEADR+F+MGF+ Q+ ++ RQT+
Sbjct: 655 IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTV 714
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLL---Q 362
LFSAT P + A+ L+ PV +++ + +++++ L + +R LL LL
Sbjct: 715 LFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWS 774
Query: 363 EAIKMPVATESQIK 376
E K+ V +SQ K
Sbjct: 775 EKGKILVFVQSQEK 788
Score = 67.8 bits (164), Expect = 8e-11
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 417 SEKATI-VFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVT 475
SEK I VFV ++ + + + + Y ++G +Q R+ + +F+ + ++L+ T
Sbjct: 774 SEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIAT 833
Query: 476 DVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
VAARG+D+ L V+N+ P + ++HRVGRT RAG +G A + +S
Sbjct: 834 SVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFIS 881
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 148 bits (373), Expect = 5e-35
Identities = 116/386 (30%), Positives = 174/386 (45%), Gaps = 54/386 (13%)
Query: 137 VLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIG 196
+LI K + PT IQ+ IP ++ R+++ A TG GKT F++P+IE+ H
Sbjct: 108 LLIKALGKEYSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIPIIER---HRQMKK 164
Query: 197 VRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGG-DSLEDQFGMMMGNPDVVIATPG 255
+A I+SP+REL Q + GS +R + + G L G+ D+V+ATPG
Sbjct: 165 PQACIISPTRELCEQIRVEASKLVAGSRIRVVSIYGKKQDLPSYSGV-----DIVVATPG 219
Query: 256 RFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSL 315
R + L +DL + V DEAD+L +MGF+ + E+ P N QT LFSAT L
Sbjct: 220 RLIDLLHRKKVDLSEIRMFVLDEADKLLDMGFEIPIREIHGFVPKNTQTCLFSATYSPKL 279
Query: 316 VDFAKAGL-SNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQ 374
L + V + + +ET + E++ + KK +L +K P
Sbjct: 280 TRMINYFLPEDKVSIEISSETLKNIRQEIVEVRNKKK--------MLLNILKGPDINLKG 331
Query: 375 IKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYV 434
+++ Q +VFV + V
Sbjct: 332 SWRMEVQ------------------------------------PDKVLVFVERKSECGEV 355
Query: 435 TQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYS 494
++LK G L ++G Q R + L FR G ++V T VAARG+DI + VINY
Sbjct: 356 EKVLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYD 415
Query: 495 LPGSSKIFIHRVGRTARAGNRGWAFS 520
+P K +IHR+GRT R G G + S
Sbjct: 416 IPKDIKEYIHRIGRTGREGKSGKSIS 441
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 148 bits (373), Expect = 5e-35
Identities = 79/238 (33%), Positives = 137/238 (57%), Gaps = 6/238 (2%)
Query: 132 GLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTH 191
GL+ +L + K + +P PIQ + +P+I+ RD +G+A+TGSGKT FVLPM+ +K
Sbjct: 402 GLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQ 461
Query: 192 ---SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPD 248
A G ++++P+REL Q + ++FSK + + + GG + Q + +
Sbjct: 462 PPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTE 521
Query: 249 VVIATPGRFLHLKVEMN---LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
+V+ TPGR + + + +L+ V Y+V DEADR+F+MGF+ Q+ ++ +RQT+
Sbjct: 522 IVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 581
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQE 363
LFSAT P + A+ L+ PV +++ + +++++ L + ER + LL LL E
Sbjct: 582 LFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELLGE 639
Score = 60.5 bits (145), Expect = 1e-08
Identities = 25/68 (36%), Positives = 47/68 (68%)
Query: 456 ARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNR 515
++++ + +F++ + ++L+ T VAARG+D+ L V+N+ P + ++HRVGRT RAG +
Sbjct: 652 SQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRK 711
Query: 516 GWAFSIVS 523
G A + +S
Sbjct: 712 GCAVTFIS 719
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 147 bits (371), Expect = 8e-35
Identities = 89/265 (33%), Positives = 146/265 (54%), Gaps = 25/265 (9%)
Query: 94 LSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQ 153
LS+D++ A + +D F +T D + H +F LS+ +L G+++PTPIQ
Sbjct: 136 LSEDDEAAEYKPEDATPKPFFSTVDGVSFHAD-TFMELNLSRPLLRACETLGYKKPTPIQ 194
Query: 154 RKTIPLILQKRDIVGMARTGSGK--------------------TAAFVLPMIEKLKTHSA 193
+ IP + RD+ A TGSGK TAAF LP +E+L
Sbjct: 195 VQFIPQ--EWRDLCASAITGSGKVSTRLMVLCNTEILFRYLTNTAAFALPTLERLLFRPK 252
Query: 194 KI-GVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIA 252
++ R +IL+P+RELA+Q H + + ++ +D++ L+ GG S+ +Q ++ PD+V+A
Sbjct: 253 RVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVA 312
Query: 253 TPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATL 311
TPGR + HL+ M++DL + ++ DEADRL + GF ++ EL+ P RQT+LFSAT+
Sbjct: 313 TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATM 372
Query: 312 PSSLVDFAKAGLSNPVLVRLDAETK 336
+ + K L+ P+ + D +
Sbjct: 373 TEEVKELVKLSLNKPLRLSADPSAR 397
Score = 60.8 bits (146), Expect = 1e-08
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 464 FRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
FR L+ TDVAARG+DI + VINY+ P ++HRVGRTARAG G+A + V+
Sbjct: 466 FRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVT 525
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 147 bits (370), Expect = 1e-34
Identities = 121/437 (27%), Positives = 193/437 (43%), Gaps = 74/437 (16%)
Query: 101 ATNESDDDLNDYFNTTADAAAKHKKGS--------FASFGLSKLVLINISKKGFRQPTPI 152
AT+ ++ D N+ + AA KKGS F F L + I GF P+ +
Sbjct: 35 ATSATEGDNNN------NTAAGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEV 88
Query: 153 QRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQT 212
Q+ TIP + D++ A++G GKTA FVL +++L ++ V V++ +RELA Q
Sbjct: 89 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAV--VVICNARELAYQI 146
Query: 213 HRVFKEFSKGS-DLRSILLTGGDSLEDQFGMMMGN---PDVVIATPGRFLHLKVEMNLDL 268
+ FSK D+++ + GG + ++ P +V+ATPGR L E +DL
Sbjct: 147 RNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDL 206
Query: 269 KSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPV 327
V+ V DE D++ E + + + E+ A P ++Q ++FSATL + + L NP+
Sbjct: 207 SHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPL 266
Query: 328 LVRLDAETKIS-ENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXX 386
+ +D E K++ L+ +I K +ERE N
Sbjct: 267 EIFVDDEAKLTLHGLQQYYI--KLEEREKN------------------------------ 294
Query: 387 XXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVS 446
R+L + I+FV + +T+LL +
Sbjct: 295 --------------------RKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAI 334
Query: 447 YIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRV 506
++G + Q R + F+ I V TDV RG+DI + INY L + ++HRV
Sbjct: 335 TVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRV 394
Query: 507 GRTARAGNRGWAFSIVS 523
GR R G +G A S VS
Sbjct: 395 GRAGRFGTKGLAISFVS 411
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 146 bits (369), Expect = 1e-34
Identities = 86/216 (39%), Positives = 127/216 (57%), Gaps = 3/216 (1%)
Query: 116 TADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSG 175
TAD A K F + L + +L I +KGF +P+PIQ ++IP+ L DI+ A+ G+G
Sbjct: 115 TADVTAT-KGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTG 173
Query: 176 KTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDS 235
KT AF +P++EK+ ++ I +A+IL P+RELA+QT +V KE SK +++ ++ TGG S
Sbjct: 174 KTGAFCIPVLEKIDPNNNVI--QAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTS 231
Query: 236 LEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL 295
L D + +++ TPGR L L + LK +V DEAD+L FQ L EL+
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELI 291
Query: 296 VAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRL 331
P NRQ L+FSAT P ++ F L P ++ L
Sbjct: 292 QFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINL 327
Score = 70.9 bits (172), Expect = 9e-12
Identities = 36/103 (34%), Positives = 60/103 (57%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
+I+F + + VE + + + GY YI+ + Q R + + FR G LV TD+ R
Sbjct: 364 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTR 423
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
G+DI + VIN+ P +S+ ++HRVGR+ R G+ G A ++V+
Sbjct: 424 GIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVT 466
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 145 bits (367), Expect = 2e-34
Identities = 140/517 (27%), Positives = 239/517 (46%), Gaps = 70/517 (13%)
Query: 133 LSKLVLINISKKGFRQPTPIQRKTIPLIL-QKRDIVGMARTGSGKTAAFVLPMIE----- 186
LS ++S+ GF + TP+Q++ + + + + V A+TG+GKT AF+L +
Sbjct: 45 LSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKG 104
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDS-LEDQFGMMMG 245
K + +S+KI +VILSP+RELA+Q ++ + G+ +R GG+S + ++ + G
Sbjct: 105 KPRLNSSKI--HSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRG 162
Query: 246 NPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNR-Q 303
N +++IATPGR HL+ L+ S + + DEADRL +MGF E + + A T + +
Sbjct: 163 NANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTR 222
Query: 304 TLLFSATLPSSLVDFAKA--GLSNPVLVRLDA-ETKISENLEMLFISIKKDEREANLLYL 360
L FSAT+P + + + G ++ LD E E + I K D+ ++ L L
Sbjct: 223 KLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSSLSL 282
Query: 361 LQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKA 420
LQ+ L ++N PS +
Sbjct: 283 LQQ---------------------------------------------LTSSN--PSSR- 294
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYI-YGALNQHARKQQLYNFRAGLTSILVVTDVAA 479
IVF+PT V++V +L+N + +I + L R+ +FR + IL TDV A
Sbjct: 295 IIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVA 354
Query: 480 RGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXXXXXGK 539
RG+D P + V+ + P ++ +IHR+GRT RAG G A+ I+ K
Sbjct: 355 RGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIKHLPLK 414
Query: 540 KILLTPMYESSCQILRKKAESEGNNNFTDP-KVSYTTR-MVLGACPRSEIDGMGDLYSNM 597
+ + P+ + + LR E + T+ K Y ++ V + G N+
Sbjct: 415 RATIEPLSDQALSTLRSDIEKSSKFSRTNALKTLYGSKPHVFSGSSQRRATG-----KNI 469
Query: 598 IKSDFELNTVKGVALKAEKLYFRTRTPASAESMKRSK 634
+S L ++ V E+L +++R S + + S+
Sbjct: 470 HESAIALFSLHDVPGLMEELIYKSRGRGSPKGFRGSQ 506
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 145 bits (367), Expect = 2e-34
Identities = 124/412 (30%), Positives = 186/412 (45%), Gaps = 64/412 (15%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF S + K + ++ +GF++ TP+Q IPL L+ +D+V A TGSGKT A++LP +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 187 KL-KTHSAKIGVRAVILSPSRELAIQTHRVFKE--------FSKGSDLRSILLTGGDS-- 235
K+ + + + G+ A+I++P+RELA Q V KE G L + + GG
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 236 LEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL 295
D NP VVI TPGR + ++ K +E ++ DEAD L +MGFQ L ++
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEML--SHISSKHLEILILDEADTLIDMGFQRTLQSII 179
Query: 296 VAFPTNRQTLLFSATLPSSLVDFAK-AGLSNPVLVRLDAETKISENLEMLFISIKKDERE 354
P R+T LFSAT+ ++ F K AGL N V V + +K K D R
Sbjct: 180 SQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSK------------KIDTRT 227
Query: 355 ANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANE 414
+ L + I + I L
Sbjct: 228 PSSLAIQSLVIPPIYKVQCMIHLL----------------------------------CT 253
Query: 415 MPSEKATIVFVPTRHHVEYVTQLL--KNCGYLVSYIYGALNQHARKQQLYNF-RAGLTSI 471
+ EKA IVF + VEY L + + ++G Q R + F ++ ++
Sbjct: 254 IEYEKA-IVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTV 312
Query: 472 LVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
L TD+A+RG+DIP + V+ P K F HR GR RAG G A +++
Sbjct: 313 LFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLN 364
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 145 bits (367), Expect = 2e-34
Identities = 114/432 (26%), Positives = 190/432 (43%), Gaps = 66/432 (15%)
Query: 104 ESDDDLNDYFNTTADAAAKHKKGSFAS--------FGLSKLVLINISKKGFRQPTPIQRK 155
E +++ D A+ KG++AS F L +L I GF P+ +Q +
Sbjct: 11 EEQEEIQDKQPEVGGGDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHE 70
Query: 156 TIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRV 215
IP + D+V A++G GKTA FV+ +++L+ ++ V V + +RELA Q +
Sbjct: 71 CIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSV--VCMCHTRELAFQISKE 128
Query: 216 FKEFSKG-SDLRSILLTGGDSLE-DQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEY 273
++ FSK ++ + GG +++ D+ + P +V+ TPGR L L L L V+Y
Sbjct: 129 YERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKY 188
Query: 274 VVFDEADRLF-EMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLD 332
V DE D++ + + + E++ P +Q ++FSATLP L K + +P+ V +D
Sbjct: 189 FVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVD 248
Query: 333 AETKIS-ENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXX 391
E K++ L+ ++ +K+ E+
Sbjct: 249 DEAKLTLHGLQQHYVKLKEAEKN------------------------------------- 271
Query: 392 XXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGA 451
RRL N + ++FV E + QLL + I+
Sbjct: 272 ---------------RRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQ 316
Query: 452 LNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTAR 511
+ Q R + F+ ILV TD+ RG+DI + V NY +P S ++HRV R R
Sbjct: 317 MAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGR 376
Query: 512 AGNRGWAFSIVS 523
G +G A + VS
Sbjct: 377 FGTKGLAITFVS 388
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 145 bits (366), Expect = 3e-34
Identities = 109/400 (27%), Positives = 188/400 (46%), Gaps = 66/400 (16%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F + + + + + GF +Q+K IP+ L+ DI+G ++TG+GKT AF++P +++
Sbjct: 6 FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQR 65
Query: 188 LKT--HSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMG 245
L + G+ ++++P+RELA+Q V +K + L + L+ GG ED+ + +
Sbjct: 66 LVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAEDEL-LKVN 124
Query: 246 NPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQT 304
++++ TPGR L HL+ L +V+ ++ DEAD++ EMGF+E L ++L P +QT
Sbjct: 125 QMNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIPQKKQT 184
Query: 305 LLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEA 364
LLFSAT +S K L +P ++ + E L F ++ + + N L+
Sbjct: 185 LLFSATPKASTARILK--LEDPRIISIYKEEGFPSQLRQYFYMMRTGD-KINYLHTF--- 238
Query: 365 IKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVF 424
+ + ++K IVF
Sbjct: 239 ----IGSNPEVKG--------------------------------------------IVF 250
Query: 425 VPTRHHVEYVTQL-----LKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAA 479
T V++ L L+N + +S G ++Q R F IL TD+ +
Sbjct: 251 FSTCKEVKFHCLLFERLKLRNRIFCLS---GGMSQKQRIDVFKRFVKEKNGILFCTDLGS 307
Query: 480 RGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAF 519
RG+D P + VI Y P + + ++HRVGRTAR RG ++
Sbjct: 308 RGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGESY 347
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 145 bits (366), Expect = 3e-34
Identities = 111/398 (27%), Positives = 182/398 (44%), Gaps = 66/398 (16%)
Query: 138 LINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPM---IEKLKTHSAK 194
L+ + K ++ T +Q + +L D+V + TGSGKT AFVLPM I+ K A
Sbjct: 21 LLEVFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPAD 80
Query: 195 IGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMG-NPDVVIAT 253
IG A+ILSPSREL Q V + F++ +L +TGG ++ M N ++++AT
Sbjct: 81 IG--ALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVAT 138
Query: 254 PGRFL----HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSA 309
PGR H K + +++++ +V DEADR E+ F++ + E+L P R+T LFSA
Sbjct: 139 PGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTGLFSA 198
Query: 310 TLPSSLVDFAKAGLSNPVLVRLDAE--TKISENLEMLFISIKKDEREANLLYLLQEAIKM 367
T D GL N V++ E + L+ ++ + DE+ + L +++
Sbjct: 199 TQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQR--- 255
Query: 368 PVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPT 427
++K ++F P+
Sbjct: 256 -------------------------------------------------TDKKILIFFPS 266
Query: 428 RHHVEYVTQLLKNC--GYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIP 485
+ V Y ++ + C + ++G + R Q+ F +++ TDV ARG+DI
Sbjct: 267 CNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGIDIS 326
Query: 486 LLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+ VI + LP S F+HR GRTAR G G A +++
Sbjct: 327 DIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIA 364
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 145 bits (366), Expect = 3e-34
Identities = 87/241 (36%), Positives = 134/241 (55%), Gaps = 5/241 (2%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F S L +++ N++K G++ PTPIQ+ +IP+I RD++ A+TGSGKTAAF+LP++ K
Sbjct: 247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306
Query: 188 L--KTHSAKIG-VRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMM 244
L H ++G + VI+SP+RELAIQ ++F+ S L+ ++ GG S Q +
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 366
Query: 245 GNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL--VAFPTNR 302
VVIATPGR L + + +VV DEADR+ +MGF E + ++ V
Sbjct: 367 RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 426
Query: 303 QTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQ 362
QTL+FSAT P + A L N V V + +++ + K + + L+ +L
Sbjct: 427 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILS 486
Query: 363 E 363
E
Sbjct: 487 E 487
Score = 80.5 bits (197), Expect = 1e-14
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 414 EMPSEKA--TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSI 471
E+ SE+A TIVFV T+ +++ L + + I+G Q R+Q L +F+ G +
Sbjct: 483 EILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 542
Query: 472 LVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
L+ T VA+RG+DI + +VINY +P ++HR+GRT R GN G A S
Sbjct: 543 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATS 591
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 144 bits (363), Expect = 7e-34
Identities = 89/237 (37%), Positives = 133/237 (55%), Gaps = 5/237 (2%)
Query: 95 SDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQR 154
++++ KAT + N Y T D A K F + L + +L I +KGF +P+PIQ
Sbjct: 126 NNEDWKATLKLPPRDNRY--QTEDVTAT-KGNEFEDYFLKRDLLRGIYEKGFEKPSPIQE 182
Query: 155 KTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHR 214
++IP+ L DI+ A+ G+GKT AF +P +EK+ + I +AVIL P+RELA+QT +
Sbjct: 183 ESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVI--QAVILVPTRELALQTSQ 240
Query: 215 VFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYV 274
V KE SK + ++ TGG SL D + +++ TPGR L L + LK +
Sbjct: 241 VCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAML 300
Query: 275 VFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRL 331
V DEAD+L + FQ + EL+ P +RQ L+FSAT P ++ F L P ++ L
Sbjct: 301 VMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINL 357
Score = 71.2 bits (173), Expect = 7e-12
Identities = 36/103 (34%), Positives = 61/103 (58%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
+I+F + + VE + + + GY YI+ + Q R + ++FR G LV TD+ R
Sbjct: 394 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTR 453
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
G+DI + VIN+ P +S+ ++HRVGR+ R G+ G A ++V+
Sbjct: 454 GIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVT 496
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 144 bits (362), Expect = 9e-34
Identities = 123/405 (30%), Positives = 185/405 (45%), Gaps = 64/405 (15%)
Query: 133 LSKLVLINISKKGFRQPTPIQRKTIPLIL--QKRDIVGMARTGSGKTAAFVLPMIEKL-- 188
L K + I++ F TP+Q+KTI IL + D++ A+TG+GKT AF++P+ + L
Sbjct: 113 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 172
Query: 189 KTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGS----DLRSILLTGGDSLEDQFGMMM 244
++ V+AVI++P+R+LA+Q K+ + + L GG M
Sbjct: 173 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN 232
Query: 245 G-NPDVVIATPGRFLH-LKVEMNLDLKSVEYVVFDEADRLFEMGFQEQ-------LNELL 295
P++VIATPGR + L+ N + V+Y V DEADRL E+GF++ LNE
Sbjct: 233 KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN 292
Query: 296 VAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKIS-ENLEMLFISIKKDERE 354
N +TLLFSATL + A ++ + LD K E E + S+ E+
Sbjct: 293 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 352
Query: 355 ANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANE 414
AN ++ E IK QIK E
Sbjct: 353 ANSIFAAVEHIK------KQIK-------------------------------------E 369
Query: 415 MPSEKATIVFVPTRHHVEYVTQLLKN---CGYLVSYIYGALNQHARKQQLYNFRAGLTSI 471
S I+F PT ++ +LKN + +G + Q+ R + F+ + I
Sbjct: 370 RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 429
Query: 472 LVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
LV TDV ARG+D P + V+ +P +IHR+GRTAR+G G
Sbjct: 430 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEG 474
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 144 bits (362), Expect = 9e-34
Identities = 111/445 (24%), Positives = 202/445 (44%), Gaps = 76/445 (17%)
Query: 101 ATNESDDDLNDYFNTTADAAA----------KHKKGSFAS--------FGLSKLVLINIS 142
A N+ D++L DY + + AA K KGS+ S F L +L I
Sbjct: 2 AENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 61
Query: 143 KKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVIL 202
GF P+ +Q + IP + D++ A++G GKTA FVL +++L+ + ++ V +++
Sbjct: 62 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV--LVM 119
Query: 203 SPSRELAIQTHRVFKEFSKGS-DLRSILLTGGDSLEDQFGMMMGN-PDVVIATPGRFLHL 260
+RELA Q + ++ FSK +++ + GG S++ ++ N P +V+ TPGR L L
Sbjct: 120 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILAL 179
Query: 261 KVEMNLDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFA 319
+L+LK +++ + DE D++ E + + + E+ P +Q ++FSATL +
Sbjct: 180 ARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVC 239
Query: 320 KAGLSNPVLVRLDAETKIS-ENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKL 378
+ + +P+ + +D ETK++ L+ ++ +K +E+
Sbjct: 240 RKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN------------------------ 275
Query: 379 KQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLL 438
R+L + ++ ++FV + + QLL
Sbjct: 276 ----------------------------RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLL 307
Query: 439 KNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGS 498
+ I+ + Q R + F+ ILV T++ RG+DI + NY +P
Sbjct: 308 VEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPED 367
Query: 499 SKIFIHRVGRTARAGNRGWAFSIVS 523
S ++HRV R R G +G A + VS
Sbjct: 368 SDTYLHRVARAGRFGTKGLAITFVS 392
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 144 bits (362), Expect = 9e-34
Identities = 127/479 (26%), Positives = 199/479 (41%), Gaps = 107/479 (22%)
Query: 97 DEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKT 156
DE + E ++ ND + K SF GL ++ ++KKG +PT IQ+
Sbjct: 18 DEVEKAEEVEEQRNDREQEEEQKEEEAPK-SFEELGLDSRLIRALTKKGIEKPTLIQQSA 76
Query: 157 IPLILQKRDIVGMARTGSGKTAAFVLPMIEKL----KTHSAKIGVRAVILSPSRELAIQT 212
IP IL+ +D+V A+TGSGKT A++LP+++KL K+ A IL PSREL Q
Sbjct: 77 IPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQ- 135
Query: 213 HRVFKEFSK-----GSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPG----RFLHLKVE 263
V+ E S L+++ LT S D + G P+++++TP F +E
Sbjct: 136 --VYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLE 193
Query: 264 MNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGL 323
+S+ +V DEAD L G+++ L + P Q LL SAT S + K L
Sbjct: 194 PTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLIL 253
Query: 324 SNPVLVRL----DAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLK 379
NP+++ L D E + N++ +IS ++ ++L LL K+ V
Sbjct: 254 HNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALL----KLEVV--------- 300
Query: 380 QQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLK 439
+K ++F+ T + L+
Sbjct: 301 --------------------------------------QKKILIFINTIDMGFRLKLFLE 322
Query: 440 NCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTD----------------------- 476
G + + G L Q++R L F AGL L+ TD
Sbjct: 323 KFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKN 382
Query: 477 ------------VAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
RG+D + VIN+ +P S +IHR+GRT RA + G + S++S
Sbjct: 383 NKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLIS 441
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 143 bits (360), Expect = 1e-33
Identities = 133/460 (28%), Positives = 204/460 (43%), Gaps = 122/460 (26%)
Query: 133 LSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHS 192
LS +L ++ F +PT IQ+K+IP+I+Q D++G A TGSGKT A+ +P++EKL ++
Sbjct: 178 LSMTILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNF 237
Query: 193 AKIGVR--AVILSPSRELAIQTHRVFKEFSK----GSDLRSILLTGGDSLEDQFGMMM-- 244
++ + ++I +P+RELA Q K+ + S + LTGG S++ Q ++
Sbjct: 238 SQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYD 297
Query: 245 GNPDVVIATPGRFLHLKVEMNLDLK---SVEYVVFDEADRLFEMG----FQEQLNELLVA 297
+ +VIATPGRFL L + N +K V ++ DEADRL + G F++ + LLV
Sbjct: 298 NSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVE 357
Query: 298 FPTNR----------QTLLFSATLPSSLVDFAKAGL------------------------ 323
NR QTL+FSAT L D +
Sbjct: 358 RRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSK 417
Query: 324 ----SNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLK 379
S PV++ + E+K+S ++ I ER+ Y L P T
Sbjct: 418 IHFNSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFL---TMFPGTT-------- 466
Query: 380 QQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLK 439
L N + S K V++
Sbjct: 467 -----------------------------LIFCNAIDSVKKLTVYL-------------N 484
Query: 440 NCGYLVSYIYGALNQHARKQQLYNFR----------------AGLTSILVVTDVAARGVD 483
N G I+ ++ Q R + L F+ L+++L+ +DVAARG+D
Sbjct: 485 NLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLD 544
Query: 484 IPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
IP + +VI+Y LP S+ I+IHR GRTARAG+ G + I S
Sbjct: 545 IPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICS 584
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 142 bits (358), Expect = 3e-33
Identities = 80/210 (38%), Positives = 121/210 (57%), Gaps = 2/210 (0%)
Query: 122 KHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFV 181
K + F + L + +L+ I + GF +P+PIQ ++IP+ L RDI+ A+ G+GKTAAFV
Sbjct: 40 KTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFV 99
Query: 182 LPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFG 241
+P +EK+ T +KI + +IL P+RELA+QT +V K K +++ ++ TGG +L D
Sbjct: 100 IPSLEKVDTKKSKI--QTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDII 157
Query: 242 MMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTN 301
+ +V+ TPGR L L + D V DEAD+L F + +LL FP N
Sbjct: 158 RLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKN 217
Query: 302 RQTLLFSATLPSSLVDFAKAGLSNPVLVRL 331
RQ L+SAT P + +F L+ P + L
Sbjct: 218 RQISLYSATFPLIVKNFMDKHLNKPYEINL 247
Score = 74.3 bits (181), Expect = 8e-13
Identities = 35/103 (33%), Positives = 61/103 (58%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
+I+F + + VE + + + GY Y + + Q R + +NFR G+ LV +D+ R
Sbjct: 284 SIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTR 343
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
G+DI + VIN+ P +++ ++HR+GR+ R G+RG A S +S
Sbjct: 344 GIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 142 bits (358), Expect = 3e-33
Identities = 112/381 (29%), Positives = 177/381 (46%), Gaps = 70/381 (18%)
Query: 141 ISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAK--IGVR 198
I + GF + T +Q K IP +L+ +D+V + TG+GKT AF+ P++ + + GV
Sbjct: 19 IEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVT 78
Query: 199 AVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL 258
AV+++P+RELA+Q V F D++ GG S+E+ + M + + TPGR L
Sbjct: 79 AVVITPTRELALQIREVAGLF----DVKCECFIGGMSIEEDYKRMKEEFSIAVGTPGRLL 134
Query: 259 HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDF 318
+ + S+ ++V DEAD+L GF+E+L +LL P NR T LFSAT S+
Sbjct: 135 EIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLPRNRVTGLFSATRNDSVDKL 194
Query: 319 AKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKL 378
++ L NP +SI E MPVA E +
Sbjct: 195 SRVFLRNP-------------------VSINVGNNE------------MPVALEYIVVSP 223
Query: 379 KQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLL 438
+ +L ++ + + IVF T V++ + L+
Sbjct: 224 ME---------------------------KLLVLMDIVTGRRCIVFFATCSEVDFFSGLV 256
Query: 439 KNCGY-LVSYIYGALNQHARKQQLYNF--RAGLTSILVVTDVAARGVDIPLLANVINYSL 495
G+ + I+G ++Q R + F R GL L TDVAARG+D + V+++ +
Sbjct: 257 SRAGFGNICKIHGKISQDERNRVYEEFFQRDGL---LFCTDVAARGIDFRGVDLVVHFDV 313
Query: 496 PGSSKIFIHRVGRTARAGNRG 516
P +HR GRTAR G++G
Sbjct: 314 PKEYSSIVHRSGRTARNGSKG 334
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 142 bits (358), Expect = 3e-33
Identities = 85/234 (36%), Positives = 135/234 (57%), Gaps = 15/234 (6%)
Query: 141 ISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMI------EKLKTHSAK 194
+ KG PTPIQ + +P++L RD++G+A TGSGKT FVLPMI E + +A
Sbjct: 112 LKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAG 171
Query: 195 IGVRAVILSPSRELAIQTHRVFKEFSKG------SDLRSILLTGGDSLEDQFGMMMGNPD 248
G A+++ PSRELA QT+ V ++F LRS+L GG + Q ++
Sbjct: 172 EGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVH 231
Query: 249 VVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFS 308
+V+ATPGR + + + L + + DEADRL ++GF++ + + F + RQTLLFS
Sbjct: 232 IVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFS 291
Query: 309 ATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQ 362
AT+P+ + FA + L PV V + + NL+++ ++ ++EA ++YLL+
Sbjct: 292 ATMPAKIQIFATSALVKPVTVNVGRAG--AANLDVI-QEVEYVKQEAKIVYLLE 342
Score = 72.4 bits (176), Expect = 3e-12
Identities = 35/102 (34%), Positives = 59/102 (57%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
++F + V+ + + L G I+G +Q R + F+AG +LV TDVA++G
Sbjct: 352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKG 411
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+D P + +VINY +PG + ++HR+GRT R G G A + ++
Sbjct: 412 LDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFIN 453
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 141 bits (355), Expect = 6e-33
Identities = 78/209 (37%), Positives = 123/209 (58%), Gaps = 9/209 (4%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMI- 185
SF FG + ++ + K + QPTPIQ + +P L RDI+G+A+TGSGKTAAF+ PM+
Sbjct: 270 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 329
Query: 186 -----EKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQF 240
++LK IG+ IL+P+REL++Q + K+F K +L + GG S +Q
Sbjct: 330 HVMDQKQLKPGDGPIGL---ILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQS 386
Query: 241 GMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT 300
+ ++++ATPGR + + +L+ V ++V DEADR+F MGF+ Q+ +
Sbjct: 387 KALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRP 446
Query: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVLV 329
+RQ L+FSAT + A+ LS+PV +
Sbjct: 447 DRQCLMFSATFKKRIERLARDVLSDPVRI 475
Score = 74.3 bits (181), Expect = 8e-13
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 417 SEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTD 476
SE + ++FV + E V+ L Y ++G ++Q R + + F+ ILV TD
Sbjct: 513 SEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATD 572
Query: 477 VAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
VAARG+DIP + NV+NY + HR+GRT RAG +G A+++V+
Sbjct: 573 VAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVT 619
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 140 bits (354), Expect = 7e-33
Identities = 124/453 (27%), Positives = 191/453 (41%), Gaps = 77/453 (16%)
Query: 90 PSLELSDDE--------KKATN----ESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLV 137
PS + SD++ KKA + ++D ++ T+ +K + F F LS L
Sbjct: 314 PSEDSSDEDDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKTR---FDQFPLSPLS 370
Query: 138 LINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL------KTH 191
L I GF T +Q T+P+ILQ +D++ A+TG+GKT AF+LP IE +
Sbjct: 371 LKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRD 430
Query: 192 SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSI-LLTGGDSLEDQFGMMMGNP-DV 249
S + + +++ P+RELA Q K + ++ GG L + M NP +
Sbjct: 431 SRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQI 490
Query: 250 VIATPGRFL-HLKVEMNL--DLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
++ATPGR H++ L V+ +V DEAD L +MGF+ + ++ A P RQT L
Sbjct: 491 LVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFL 550
Query: 307 FSATLPSSLVDFAKAGLSNP---VLVRLDAETKISENLEMLFISIKKDEREANLLYLLQE 363
FSAT+P + L + + + + + +++ D + L LL+E
Sbjct: 551 FSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKE 610
Query: 364 AIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIV 423
I V + I+
Sbjct: 611 HIADNV------------------------------------------------DYKVII 622
Query: 424 FVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVD 483
F T V LL V I+ Q R + FR ILV +DV+ARGVD
Sbjct: 623 FCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVD 682
Query: 484 IPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
P ++ V+ LP + +IHR+GRT R G G
Sbjct: 683 YPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEG 715
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 140 bits (353), Expect = 1e-32
Identities = 83/241 (34%), Positives = 129/241 (53%), Gaps = 14/241 (5%)
Query: 94 LSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQ 153
L+ +K ++DD LN NT F F L + +L+ I + GF +P+PIQ
Sbjct: 26 LNIPKKDTRPQTDDVLNTKGNT------------FEDFYLKRELLMGIFEAGFEKPSPIQ 73
Query: 154 RKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTH 213
+ IP+ + RDI+ A+ G+GKTAAFV+P +EK+K KI +A+I+ P+RELA+QT
Sbjct: 74 EEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI--QALIMVPTRELALQTS 131
Query: 214 RVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEY 273
+V + K + ++ TGG +L D + +++ TPGR L L DL
Sbjct: 132 QVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSL 191
Query: 274 VVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDA 333
+ DEAD++ F+ + ++L P Q+LLFSAT P ++ +F L P + L
Sbjct: 192 FIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME 251
Query: 334 E 334
E
Sbjct: 252 E 252
Score = 70.1 bits (170), Expect = 2e-11
Identities = 31/102 (30%), Positives = 59/102 (57%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
I+F + + VE + + + + GY Y + + Q R + + FR G LV +D+ RG
Sbjct: 287 IIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRG 346
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+DI + VIN+ P +++ ++HR+GR+ R G+ G A ++++
Sbjct: 347 IDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLIN 388
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 139 bits (351), Expect = 2e-32
Identities = 78/221 (35%), Positives = 132/221 (59%), Gaps = 8/221 (3%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+ + G+S ++ +S KG + PIQ+ + ++ RD++G ARTG+GKT AF +P+I+
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 164
Query: 187 KLKTHSAKIG----VRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGM 242
K+ ++AK G ++L+P+RELA Q + F+E + D +I L GG + Q
Sbjct: 165 KIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLD--TICLYGGTPIGQQMRQ 222
Query: 243 MMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNR 302
+ DV + TPGR + L L+L V++VV DEAD++ ++GF E + +L P R
Sbjct: 223 LDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR 282
Query: 303 QTLLFSATLPSSLVDFAKAGLSNPVLVRL--DAETKISENL 341
Q+++FSAT+PS + K L+NP+ V L D++ K+++ +
Sbjct: 283 QSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGI 323
Score = 78.6 bits (192), Expect = 4e-14
Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
IVF T+ + ++ L + ++G ++Q R++ L FR G +ILV TDVAARG
Sbjct: 353 IVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARG 411
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+D+P + +I+Y LP +++ F+HR GRT RAG +G A I S
Sbjct: 412 LDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYS 453
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 139 bits (351), Expect = 2e-32
Identities = 81/243 (33%), Positives = 141/243 (57%), Gaps = 8/243 (3%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+ A G+S ++ + +G + PIQ+ + ++ RD++G ARTG+GKT AF +P+I+
Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 176
Query: 187 KLKTHSAKIG----VRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGM 242
K+ +AK G + ++L+P+RELA Q + F+E + D +I L GG + Q
Sbjct: 177 KIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLD--TICLYGGTPIGQQMRE 234
Query: 243 MMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNR 302
+ DV + TPGR + L L+L V++VV DEAD++ ++GF E + +L P R
Sbjct: 235 LNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKR 294
Query: 303 QTLLFSATLPSSLVDFAKAGLSNPVLVRL--DAETKISENLEMLFISIKKDEREANLLYL 360
Q+++FSAT+PS + K L+NP+ + L D++ K+++ + M I+ R + + L
Sbjct: 295 QSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPL 354
Query: 361 LQE 363
++E
Sbjct: 355 VKE 357
Score = 77.8 bits (190), Expect = 8e-14
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
IVF T+ + + L Y ++G ++Q R++ L FR G SILV TDVAARG
Sbjct: 365 IVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARG 423
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSI 521
+D+P + VI+Y LP +++ F+HR GRT RAG +G A I
Sbjct: 424 LDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILI 463
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 139 bits (351), Expect = 2e-32
Identities = 73/207 (35%), Positives = 124/207 (59%), Gaps = 2/207 (0%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F F L + +L+ I +KG+ +P+PIQ IP+ L +D++ A+ G+GKT A+ +P++E+
Sbjct: 59 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 118
Query: 188 LKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNP 247
+ K ++A+++ P+RELA+QT ++ E +K D+R ++ TGG L+D +
Sbjct: 119 IDP--TKDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKV 176
Query: 248 DVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLF 307
++IATPGR L L + D+ +V DEAD+L + FQ L+ +++ P + Q LLF
Sbjct: 177 QLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLF 236
Query: 308 SATLPSSLVDFAKAGLSNPVLVRLDAE 334
SAT P ++ +F + L P + L E
Sbjct: 237 SATFPLTVKNFMEKHLREPYEINLMEE 263
Score = 70.1 bits (170), Expect = 2e-11
Identities = 32/103 (31%), Positives = 60/103 (58%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
+I+F + VE + + + GY YI+ + Q R + ++FR GL LV +D+ R
Sbjct: 297 SIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTR 356
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
G+D+ + VIN+ P ++ ++HR+GR+ R G+ G A ++++
Sbjct: 357 GIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLIT 399
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 139 bits (349), Expect = 3e-32
Identities = 109/425 (25%), Positives = 192/425 (44%), Gaps = 55/425 (12%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF GL +L ++ ++GF PT +Q +P I++ D V + TGSGKT A++LP++
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 187 KL--------KTHS---AKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSI--LLTGG 233
++ +HS + ++A+I++PSREL +Q R ++ R + L+ G
Sbjct: 171 EIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGA 230
Query: 234 DSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNE 293
+ + + + P +V+ TPGR + L ++V DE D L F+E ++
Sbjct: 231 NRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHR 290
Query: 294 LL--------------VAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAET---K 336
+L V NRQT+L SAT+P S++ AK+ PVLV+ + T
Sbjct: 291 ILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDT 350
Query: 337 ISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXX 396
+ + ++ ++ E + + +Q +P A + K Q+
Sbjct: 351 VQPSAPVMSLTPTTSEADGQIQTTIQ---SLPPALKHYYCISKHQH-------------- 393
Query: 397 XXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHA 456
RR +A + S I F+ ++ V L+ G + ++G L +
Sbjct: 394 -----KVDTLRRCVHALDAQS---VIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLG 445
Query: 457 RKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
R L F+ G +LV +++ARG+D+ V+N LP + + HR GRT R G +G
Sbjct: 446 RSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKG 505
Query: 517 WAFSI 521
++
Sbjct: 506 TVVTV 510
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 138 bits (348), Expect = 4e-32
Identities = 126/475 (26%), Positives = 219/475 (45%), Gaps = 73/475 (15%)
Query: 91 SLELSDDEKKATNESDDDLNDY----FNTTADAA-AKHKKGSFASFGLSKLVLINISKK- 144
SL DD + + + +L D TT +A+ A K +FA L + +++ K
Sbjct: 98 SLFTGDDSEHFSQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQLADHLNNKM 157
Query: 145 GFRQPTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPMIEKL-----KTHSAKIGV 197
PT IQ +P +L +D A+TGSGKT A++LP++++L H+ G+
Sbjct: 158 NISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGI 217
Query: 198 RAVILSPSRELAIQTHRVFKEFSKGSDLRSIL---LTGGDSLEDQFGMMMGNPDVVIATP 254
AVI++P+REL Q + V + + I+ + GG+ + + + +++I TP
Sbjct: 218 YAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTP 277
Query: 255 GRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL-------------VAFPT 300
GR HL+ LD+ V +VV DE DRL +MGF+E L ++L ++ P+
Sbjct: 278 GRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPS 337
Query: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVLVRL-------DAETKISENLEMLFISIKKDER 353
+ T+L SAT+ ++ + + L + + ++ D ++ E L ++ + R
Sbjct: 338 RKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLR 397
Query: 354 EANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNAN 413
+L+ LL+ ++ KK+ R NA+
Sbjct: 398 LVSLVALLRSHVR-------SYKKI-----------IIFLSCSDSVDFHFEAFRCAINAD 439
Query: 414 EM-------PSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRA 466
EM P + I+ ++ + + + ++G+L+Q R L F +
Sbjct: 440 EMEEAVKEKPDSEGDIISNAPALRIDGKSNVYR--------LHGSLSQQIRTSTLNLFSS 491
Query: 467 GLTS---ILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWA 518
S IL+ TDVAARG+D+P + V+ Y P S+ ++HR+GRTARAG+ G A
Sbjct: 492 SEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAA 546
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 138 bits (348), Expect = 4e-32
Identities = 114/439 (25%), Positives = 199/439 (44%), Gaps = 74/439 (16%)
Query: 106 DDDLNDYFN-----TTA----DAAAKHKKGSFAS--------FGLSKLVLINISKKGFRQ 148
+DDL DY + TTA +A K KG++ S F L +L I GF
Sbjct: 4 NDDLLDYEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEH 63
Query: 149 PTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSREL 208
P+ +Q + IP + DI+ A++G GKTA FVL +++L+ S +++ +REL
Sbjct: 64 PSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEP-SDNNTCHVLVMCHTREL 122
Query: 209 AIQTHRVFKEFSKGSD-LRSILLTGGDSLE-DQFGMMMGNPDVVIATPGRFLHLKVEMNL 266
A Q + ++ FSK ++ + GG +++ D+ + G P +V+ TPGR L L L
Sbjct: 123 AFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKL 182
Query: 267 DLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSN 325
+LK +++ V DE D++ E + + + E+ + P +Q ++FSATL + K + +
Sbjct: 183 NLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQD 242
Query: 326 PVLVRLDAETKIS-ENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXX 384
P+ V +D E K++ L+ ++++ K+ + L+ L + ++
Sbjct: 243 PMEVYVDDEAKLTLHGLQQHYVNL-KENEKNKKLFELLDVLEF----------------- 284
Query: 385 XXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYL 444
++FV + ++QLL +
Sbjct: 285 ----------------------------------NQVVIFVKSVQRCVALSQLLTEQNFP 310
Query: 445 VSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIH 504
I+ + Q R + F+ ILV T++ RG+DI + V NY +P S ++H
Sbjct: 311 AIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLH 370
Query: 505 RVGRTARAGNRGWAFSIVS 523
RV R R G +G A + VS
Sbjct: 371 RVARAGRFGTKGLAITFVS 389
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 137 bits (346), Expect = 6e-32
Identities = 80/233 (34%), Positives = 132/233 (56%), Gaps = 3/233 (1%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F F L + +L+ I +KG+ +P+PIQ +I + L +DI+ A+ G+GKT A+ +P+IEK
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 188 LKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNP 247
++ A ++A+++ P+RELA+QT ++ E SK L+ ++ TGG L D + G
Sbjct: 105 IQP--ALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTV 162
Query: 248 DVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLF 307
+VIATPGR L L + ++ + +V DEAD+L FQ L+ L+ P RQ +L+
Sbjct: 163 HLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLY 222
Query: 308 SATLPSSLVDFAKAGLSNPVLVRLDAE-TKISENLEMLFISIKKDEREANLLY 359
SAT P+++ F + + P + L E T + F+ K+ N L+
Sbjct: 223 SATFPNTVTSFMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVHCLNTLF 275
Score = 69.7 bits (169), Expect = 2e-11
Identities = 32/103 (31%), Positives = 61/103 (59%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
+I+F + VE + + + GY YI+ + Q+ R + ++FR G LV +D+ R
Sbjct: 283 SIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTR 342
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
G+DI + VIN+ P +++ ++HR+GR+ R G+ G A ++++
Sbjct: 343 GIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLIT 385
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 137 bits (345), Expect = 8e-32
Identities = 105/405 (25%), Positives = 184/405 (44%), Gaps = 59/405 (14%)
Query: 123 HKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVL 182
H G F F L +L I GF P+ +Q + IP + D++ A++G GKTA FVL
Sbjct: 42 HSSG-FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL 100
Query: 183 PMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGS-DLRSILLTGGDSLEDQFG 241
+++++ + ++ V +++ +RELA Q + ++ FSK ++ + GG S++
Sbjct: 101 ATLQQIEPVNGQVTV--LVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEE 158
Query: 242 MMMGN-PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFP 299
++ N P VV+ TPGR L L + LK+V++ V DE D++ E + + + E+ P
Sbjct: 159 VLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218
Query: 300 TNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKIS-ENLEMLFISIKKDEREANLL 358
+Q ++FSATL + + + +P+ V +D ETK++ L+ ++ +K E+
Sbjct: 219 HEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKN---- 274
Query: 359 YLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSE 418
R+L + ++
Sbjct: 275 ------------------------------------------------RKLFDLLDVLEF 286
Query: 419 KATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVA 478
I+FV + + QLL + I+ + Q R + F+ ILV T++
Sbjct: 287 NQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLF 346
Query: 479 ARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
RG+DI + V NY +P S ++HRV R R G +G A + VS
Sbjct: 347 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 391
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 136 bits (343), Expect = 1e-31
Identities = 105/410 (25%), Positives = 184/410 (44%), Gaps = 64/410 (15%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
S+ + GL +L + + + IQ IP +L D++G A T +GKTAAF LP+I+
Sbjct: 382 SWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIID 441
Query: 187 KLKTHSAKI--------GVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLED 238
K+ + G A+IL+P+RELA Q H + + + +D+ +L G
Sbjct: 442 KILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQSDRAR 501
Query: 239 QFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNEL---- 294
+ D++I T GR + V+ ++ L + ++VFDEADRL + ++ L L
Sbjct: 502 SLNEIRNGCDILIGTCGRIMDFTVKSHISLLHLRFLVFDEADRLLQDMKKDPLGHLGAII 561
Query: 295 ----LVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKK 350
+ RQT++ SAT +S++ A N ++ RL + + + + ++ +
Sbjct: 562 KDAGFMESAATRQTIMTSATFNASVMTVA-----NELMKRLPGQ----DEMIKIVLANGR 612
Query: 351 DEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLP 410
+ NL + + K L ++N R +
Sbjct: 613 LSKRVNLEFF-------------ECKGLAEKN---------------------AKLREIL 638
Query: 411 NANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTS 470
N TI+FV + + L + G L ++G +Q R++ + +F++ +
Sbjct: 639 KQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQDMREKLINDFKSNRVN 698
Query: 471 ILVVTDVAARGVDIPLLANVINYSLPG-----SSKIFIHRVGRTARAGNR 515
+LV TD+ +RG+D+ L VIN+ LP + FIHR GRT R G +
Sbjct: 699 LLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIHRAGRTGRTGRK 748
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 136 bits (343), Expect = 1e-31
Identities = 84/276 (30%), Positives = 147/276 (52%), Gaps = 12/276 (4%)
Query: 98 EKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTI 157
E++ T + D D T+ +FA L + +NI + + +PTP+QR I
Sbjct: 123 EQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAI 182
Query: 158 PLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTH--------SAKIGVRAVILSPSRELA 209
P++L +RD++ A+TGSGKTAAF P+I + S + AVILSP+RELA
Sbjct: 183 PILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242
Query: 210 IQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLK 269
Q H K+FS + ++ ++ GG + Q + D+++ATPGR L + ++
Sbjct: 243 CQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQ 302
Query: 270 SVEYVVFDEADRLFEMGFQEQLNELL--VAFPTN--RQTLLFSATLPSSLVDFAKAGLSN 325
+ ++ DEADR+ +MGF+ Q+ +++ + P RQT+LFSAT PS + A +SN
Sbjct: 303 MIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSN 362
Query: 326 PVLVRLDAETKISENLEMLFISIKKDEREANLLYLL 361
+ + + ++ + +++ ++ ++L+ LL
Sbjct: 363 YIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLL 398
Score = 74.3 bits (181), Expect = 8e-13
Identities = 36/71 (50%), Positives = 48/71 (66%)
Query: 448 IYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVG 507
I+G Q R+ L +F+ G T ILV TDVAARG+DIP +A+V+N+ LP ++HR+G
Sbjct: 429 IHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG 488
Query: 508 RTARAGNRGWA 518
RT RAG G A
Sbjct: 489 RTGRAGKSGIA 499
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 136 bits (342), Expect = 2e-31
Identities = 129/454 (28%), Positives = 205/454 (44%), Gaps = 54/454 (11%)
Query: 93 ELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFG-LSKLVLINISKKGFRQPTP 151
E ++KK + D + +A+ K ++ F L VL I + GF +PT
Sbjct: 121 EKPKEQKKRKGGENGDTGKPKKSKKEASKKTDISAWKQFYFLPNEVLEAIEQMGFSEPTE 180
Query: 152 IQRKTIPLILQKR-DIVGMARTGSGKTAAFVLPMIEKL--------KTHSAKI-GVRAVI 201
IQ +P ++ R D++G A TGSGKT AF +P++ +L +T S ++ G RA+I
Sbjct: 181 IQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALI 240
Query: 202 LSPSRELAIQTHRVFKEFSKGSDLRSILLTGG-DSLEDQFGMMMGNPDVVIATPGRFLHL 260
++P+REL IQ + + L + + GG ++ + + PD+V+ATPGR +
Sbjct: 241 VAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAM 300
Query: 261 KVEMN-----LDLKSVEYVVFDEADRLFEMGFQEQLNELL-----VAFPTNRQTLLFSAT 310
E + K ++ +V DE DR+ E G+ +L +L + QTL+FSAT
Sbjct: 301 MQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIHEESEKEKLQTLVFSAT 360
Query: 311 LPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVA 370
L FAKA ++E KK +E + +Q IK+
Sbjct: 361 L-----TFAKA-------------QDVAE-------EEKKKAKELSSQQKIQRLIKLTGL 395
Query: 371 TESQIK--KLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTR 428
E++ K L +Q L P TIVFV +
Sbjct: 396 RENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLL---TRYPGR--TIVFVNSI 450
Query: 429 HHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLA 488
+ +LK+ ++ + Q R + L F ++L+ TDVAARG+DI +
Sbjct: 451 DAARRLYSVLKSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGID 510
Query: 489 NVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
+VI+Y +P +I+IHR GRTARA +RG +V
Sbjct: 511 HVIHYQVPKKVEIYIHRSGRTARASHRGLTVVLV 544
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 135 bits (341), Expect = 2e-31
Identities = 112/401 (27%), Positives = 177/401 (43%), Gaps = 53/401 (13%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F L + +L + + F PT IQ IP+ L K D++ +++G+GKT +V+ +++
Sbjct: 26 TFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQ 85
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKG-SDLR-SILLTGGDSLEDQFGMMM 244
+ + A+I+ P+RELAIQ F K D + S + G D +D+ M
Sbjct: 86 SFNPNINQ--PHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDR--KRM 141
Query: 245 GNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTNRQ 303
V+I TPGR LHL D+ + +V DEAD+L++ Q +++L+ A P NRQ
Sbjct: 142 NESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQ 201
Query: 304 TLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQE 363
+ SAT +L + + P+L I ER LL + Q
Sbjct: 202 IIACSATYDQNLDERLAKVMDKPML-------------------ISNSERATVLLGIRQF 242
Query: 364 AIKMPVATES-QIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATI 422
++P S + +LK Q N++P E+A I
Sbjct: 243 VYELPQQNNSVEEMRLKLQILGQIF-------------------------NQLPYEQA-I 276
Query: 423 VFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGV 482
+F ++ + L G I GA+ Q R +R ILV TD+ ARGV
Sbjct: 277 IFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGV 336
Query: 483 DIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
D P VIN P ++HR+GR R G++G A + ++
Sbjct: 337 DSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIA 377
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 134 bits (338), Expect = 5e-31
Identities = 81/245 (33%), Positives = 136/245 (55%), Gaps = 7/245 (2%)
Query: 91 SLELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPT 150
+++ DD KK DL T+D + K F + L + +L+ I + G+ +P+
Sbjct: 54 TIKPGDDWKKTLKLPPKDLRI---KTSDVTST-KGNEFEDYCLKRELLMGIFEMGWEKPS 109
Query: 151 PIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAI 210
PIQ ++IP+ L RDI+ A+ G+GK+ A+++P++E+L K ++A+++ P+RELA+
Sbjct: 110 PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVPTRELAL 167
Query: 211 QTHRVFKEFSKGSDLRSILLT-GGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLK 269
Q ++ + SK ++ T GG +L D + VVIATPGR L L + +
Sbjct: 168 QVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVD 227
Query: 270 SVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLV 329
V+ +V DEAD+L F + + ++++ P NRQ LL+SAT P S+ F + L P +
Sbjct: 228 HVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEI 287
Query: 330 RLDAE 334
L E
Sbjct: 288 NLMEE 292
Score = 73.2 bits (178), Expect = 2e-12
Identities = 34/103 (33%), Positives = 60/103 (58%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
+I+F + VE + + + GY YI+ + Q R + ++FR GL LV TD+ R
Sbjct: 326 SIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTR 385
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
G+DI + VIN+ P ++ ++HR+GR+ R G+ G A ++++
Sbjct: 386 GIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 428
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 134 bits (338), Expect = 5e-31
Identities = 78/233 (33%), Positives = 134/233 (57%), Gaps = 7/233 (3%)
Query: 136 LVLINISKK-GFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTH--- 191
L ++N+ KK + +PT IQ + IP I+ RD++G+A+TGSGKT AF+LPM +
Sbjct: 313 LKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPEL 372
Query: 192 SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVI 251
G AVIL+P+RELA+QT++ +F+K L+ GG + +Q + ++V+
Sbjct: 373 EEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVV 432
Query: 252 ATPGRFLHLKVEMN---LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFS 308
TPGR + + + +L+ V Y+V DEADR+F+ GF+ Q+ +++ ++QT+LFS
Sbjct: 433 CTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFS 492
Query: 309 ATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLL 361
AT P + A+ L PV + + ++ + ++ + + ++ LL LL
Sbjct: 493 ATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELL 545
Score = 85.1 bits (209), Expect = 5e-16
Identities = 41/106 (38%), Positives = 66/106 (61%), Gaps = 1/106 (0%)
Query: 418 EKATIVFVPTRHHVEYVTQLLKNCGY-LVSYIYGALNQHARKQQLYNFRAGLTSILVVTD 476
E ++IVFV + + + L GY V+ ++G ++QH R + +F+ G+ +LV T
Sbjct: 551 EGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATS 610
Query: 477 VAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
VAARG+D+ L V+NY P + ++HRVGRT RAG +G+A++ V
Sbjct: 611 VAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFV 656
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 134 bits (338), Expect = 5e-31
Identities = 78/233 (33%), Positives = 134/233 (57%), Gaps = 7/233 (3%)
Query: 136 LVLINISKK-GFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTH--- 191
L ++N+ KK + +PT IQ + IP I+ RD++G+A+TGSGKT AF+LPM +
Sbjct: 313 LKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPEL 372
Query: 192 SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVI 251
G AVIL+P+RELA+QT++ +F+K L+ GG + +Q + ++V+
Sbjct: 373 EEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVV 432
Query: 252 ATPGRFLHLKVEMN---LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFS 308
TPGR + + + +L+ V Y+V DEADR+F+ GF+ Q+ +++ ++QT+LFS
Sbjct: 433 CTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFS 492
Query: 309 ATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLL 361
AT P + A+ L PV + + ++ + ++ + + ++ LL LL
Sbjct: 493 ATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELL 545
Score = 85.1 bits (209), Expect = 5e-16
Identities = 41/106 (38%), Positives = 66/106 (61%), Gaps = 1/106 (0%)
Query: 418 EKATIVFVPTRHHVEYVTQLLKNCGY-LVSYIYGALNQHARKQQLYNFRAGLTSILVVTD 476
E ++IVFV + + + L GY V+ ++G ++QH R + +F+ G+ +LV T
Sbjct: 551 EGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATS 610
Query: 477 VAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
VAARG+D+ L V+NY P + ++HRVGRT RAG +G+A++ V
Sbjct: 611 VAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFV 656
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 134 bits (338), Expect = 5e-31
Identities = 113/403 (28%), Positives = 177/403 (43%), Gaps = 56/403 (13%)
Query: 125 KGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPM 184
K F + LS L L I G+ T +Q T+P+IL+ +D++ A+TG+GKT AF+LP
Sbjct: 53 KTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPS 112
Query: 185 IEKL------KTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSI-LLTGGDSLE 237
IE + + + + A+++ P+RELA Q K + ++ GG L
Sbjct: 113 IEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLG 172
Query: 238 DQFGMMMGNP-DVVIATPGRFL-HLKVEMNL--DLKSVEYVVFDEADRLFEMGFQEQLNE 293
+ M NP +++ATPGR H++ LK V+ +V DEAD L +MGF++ +
Sbjct: 173 LEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIER 232
Query: 294 LLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDER 353
++ A P RQT LFSAT+P E ++ +++++D
Sbjct: 233 IISAVPKERQTFLFSATVP-------------------------EEVRQICLVALRRDHE 267
Query: 354 EANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNAN 413
N ++ + + T Q++++ R N
Sbjct: 268 FVNCVH------EGTIETHQQVRQMHM-----------IASLDRHFSLLYTLLREHIMGN 310
Query: 414 EMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILV 473
+ IVF T + V LL V I+ Q R + FR ILV
Sbjct: 311 ---VDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILV 367
Query: 474 VTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
+DV+ARGVD P + V+ LP + +IHR+GRT R G G
Sbjct: 368 TSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEG 410
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 134 bits (337), Expect = 7e-31
Identities = 116/447 (25%), Positives = 200/447 (43%), Gaps = 85/447 (19%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKR----------DIVGMARTGSGKT 177
F+S +S ++ + K+ + +Q +PL+LQ D+ A TGSGKT
Sbjct: 128 FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT 187
Query: 178 AAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLE 237
++V+P+++ L +H +R V++ P+REL +Q + F+ + G+ L+ TG SL
Sbjct: 188 LSYVIPIVQCL-SHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLR 246
Query: 238 DQFGMMMGNP-----DVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQL 291
+ + G+ DV+++TPGR + H++ + + L+ + Y+V DEADRL + FQ+ +
Sbjct: 247 HETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWV 306
Query: 292 NELLV-----------------------------------AFPTNRQTLLFSATLPSSLV 316
+ +++ P+ Q L+FSATL
Sbjct: 307 DTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPS 366
Query: 317 DFAKAGLSNPVLVRL-DAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQI 375
A L NP LV + + + ++ + E I+ D ++ LQE + V++E I
Sbjct: 367 KIASLKLHNPRLVLVQNKDMEVDDGGE-----IEDDAIVFSVPPTLQE-YHVSVSSEKPI 420
Query: 376 KKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVT 435
RL E+ E F
Sbjct: 421 -------LLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSF----------- 462
Query: 436 QLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSL 495
+CG S +L++ RK+ + F G ++LV +D+ ARG+D+ NVINY
Sbjct: 463 ----SCGLFTS----SLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDP 514
Query: 496 PGSSKIFIHRVGRTARAGNRGWAFSIV 522
P S + ++HR+GRTARAG G+A+++V
Sbjct: 515 PLSVRSYVHRIGRTARAGREGFAWTLV 541
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 134 bits (337), Expect = 7e-31
Identities = 109/407 (26%), Positives = 187/407 (45%), Gaps = 67/407 (16%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPM 184
SF L +L + GF +P+ IQ +PL+L + ++++ +++G+GKTAAFVL M
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 185 IEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKG-SDLRSILLTGGDSLEDQFGMM 243
+ +++ A + + LSP+ ELA+QT +V ++ K +L+ G+ LE G
Sbjct: 153 LSQVEP--ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER--GQK 208
Query: 244 MGNPDVVIATPGRFLHLKVEMN-LDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTN 301
+ +VI TPG L ++ +D K ++ V DEAD + G Q+Q + P N
Sbjct: 209 ISE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 267
Query: 302 RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLL 361
Q LLFSAT S+ FA+ + +P +++L E + + ++ ++ + + L L
Sbjct: 268 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL 327
Query: 362 QEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKAT 421
AI + A
Sbjct: 328 YGAITIAQA--------------------------------------------------- 336
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
++F TR ++ L G+ V+ + G + R + FR G +LV T+V ARG
Sbjct: 337 MIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 396
Query: 482 VDIPLLANVINYSLP------GSSKIFIHRVGRTARAGNRGWAFSIV 522
+D+ ++ VIN+ LP ++ ++HR+GRT R G RG A ++V
Sbjct: 397 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 134 bits (337), Expect = 7e-31
Identities = 83/221 (37%), Positives = 134/221 (60%), Gaps = 20/221 (9%)
Query: 133 LSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHS 192
LS+ ++ + + GF TP+Q +TIP + +D+V A TGSGKT AF+LP IE ++ +
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 193 A----KIGVRAVILSPSRELAIQTHRVFK----EFSKGSDLRSILLTGGDSLEDQFGMMM 244
+ V VI+SP+REL+ Q H+V + +F+K ++ + + T LE++
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNT----LEEE----- 134
Query: 245 GNPDVVIATPGRFLHLKVEMN-LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQ 303
+++I TPGR + M LD +++E ++ DEADRL +MGFQ+Q+N ++ P R+
Sbjct: 135 -GANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 193
Query: 304 TLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEML 344
T LFSAT ++ D AKAGL NP L + +A+ K S+ + +L
Sbjct: 194 TGLFSATQTQAVADLAKAGLRNPYL-KCEADQKSSQLVHLL 233
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 134 bits (336), Expect = 9e-31
Identities = 133/494 (26%), Positives = 213/494 (42%), Gaps = 107/494 (21%)
Query: 93 ELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPI 152
E S D++++T+E +L A+ + ++ G+ +L + ++GF+ PT I
Sbjct: 187 EDSADQQESTDEEAPELVPISTGEAEDMS-----AWNGLGVPASILRALGEQGFKTPTQI 241
Query: 153 QRKTIPLILQ-KRDIVGMARTGSGKTAAFVLPM---IEKLKTHSAKIGVR---------- 198
Q T+P + K+DI+G A TGSGKT AF +PM I +LK + + G+R
Sbjct: 242 QALTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQP 301
Query: 199 -----------------------------------------AVILSPSRELAIQTHRVFK 217
++L+P+RELA+Q
Sbjct: 302 EPAADEHELTPPPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLV 361
Query: 218 EFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVE---YV 274
+K + +R + GG ++ Q ++ PD+V+ATPGR L + N L +E ++
Sbjct: 362 AAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFL 421
Query: 275 VFDEADRLFEMGFQEQLNELLVAFPTN------RQTLLFSATLP--SSLVDFAKAGL--S 324
V DE DR+ E G E+L LL ++ RQ ++SATL L D +
Sbjct: 422 VIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGK 481
Query: 325 NPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXX 384
P V+ + KI +E L IS + ++ + TES++
Sbjct: 482 RPKFVKQTVDQKIESLIEELGIS------QPKIVDITSSQQTAQTLTESRL--------- 526
Query: 385 XXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQL--LKNCG 442
+R P TIVF + V+ + L L +C
Sbjct: 527 -------LCPIDHKDYHLYYFIQRHPG--------RTIVFCNSIDCVKRLATLFGLLDCN 571
Query: 443 YLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIF 502
L ++ + Q R + L FR T +L+ TDVAARG+DIP + +VI+Y +P +S+ +
Sbjct: 572 PLP--LHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENY 629
Query: 503 IHRVGRTARAGNRG 516
+HR GRTARA G
Sbjct: 630 VHRSGRTARANKHG 643
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 133 bits (334), Expect = 2e-30
Identities = 107/407 (26%), Positives = 186/407 (45%), Gaps = 67/407 (16%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPM 184
SF L +L + GF +P+ IQ +P++L + ++++ +++G+GKTAAFVL M
Sbjct: 92 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151
Query: 185 IEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKG-SDLRSILLTGGDSLEDQFGMM 243
+ +++ + + LSP+ ELA+QT +V ++ K +L+ G+ LE G
Sbjct: 152 LSRVEPSDRY--PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER--GQK 207
Query: 244 MGNPDVVIATPGRFLHLKVEMN-LDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTN 301
+ +VI TPG L ++ +D K ++ V DEAD + G Q+Q + P N
Sbjct: 208 ISE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 266
Query: 302 RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLL 361
Q LLFSAT S+ FA+ + +P +++L E + + ++ ++ + + L L
Sbjct: 267 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL 326
Query: 362 QEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKAT 421
AI + A
Sbjct: 327 YGAITIAQA--------------------------------------------------- 335
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
++F TR ++ L G+ V+ + G + R + FR G +LV T+V ARG
Sbjct: 336 MIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 395
Query: 482 VDIPLLANVINYSLP------GSSKIFIHRVGRTARAGNRGWAFSIV 522
+D+ ++ VIN+ LP ++ ++HR+GRT R G RG A ++V
Sbjct: 396 IDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 442
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 132 bits (333), Expect = 2e-30
Identities = 89/244 (36%), Positives = 133/244 (54%), Gaps = 18/244 (7%)
Query: 137 VLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIG 196
VL + + GF TP+Q TIPL ++ +D+ A TGSGKT AFV+P++E L K+
Sbjct: 20 VLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLK 79
Query: 197 ---VRAVILSPSRELAIQTHRVFKEFSKG-SDLRSILLTGGDSL-EDQFGMMMGNPDVVI 251
V A+I++P+RELAIQ V F+K + IL GG + ED ++++
Sbjct: 80 KSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIV 139
Query: 252 ATPGRF--LHLKVEMNLDL----KSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
ATPGR + + LDL +S++ +V DEADRL +MGF+ +N +L P R+T
Sbjct: 140 ATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTG 199
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRL-------DAETKISENLEMLFISIKKDEREANLL 358
LFSAT + + +AGL NPV V + + K LE ++ K DE+ L+
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLV 259
Query: 359 YLLQ 362
+ L+
Sbjct: 260 HFLR 263
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 130 bits (326), Expect = 1e-29
Identities = 77/216 (35%), Positives = 118/216 (53%), Gaps = 9/216 (4%)
Query: 116 TADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSG 175
T D A K F + L + +L+ I +KGF +P+PIQ ++IP+ L RDI+ A+ G+G
Sbjct: 122 TEDVTAT-KGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTG 180
Query: 176 KTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDS 235
KTAAF +P++EK+ + I V+ T +V KE K ++ ++ TGG S
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQGNCVL--------DHTSQVCKELGKHLKIQVMVTTGGTS 232
Query: 236 LEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL 295
L+D + +++ TPGR L L + LK +V DEAD+L FQ + L+
Sbjct: 233 LKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLI 292
Query: 296 VAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRL 331
P +RQ L+FSAT P ++ DF L+NP ++ L
Sbjct: 293 SFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINL 328
Score = 70.1 bits (170), Expect = 2e-11
Identities = 34/103 (33%), Positives = 61/103 (59%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
+I+F + + VE + + + GY YI+ + Q R + ++FR G LV TD+ R
Sbjct: 365 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTR 424
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
G+DI + VIN+ P +++ ++HRVGR+ R G+ G A ++++
Sbjct: 425 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLIT 467
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 129 bits (325), Expect = 2e-29
Identities = 128/429 (29%), Positives = 189/429 (43%), Gaps = 93/429 (21%)
Query: 151 PIQRKTIPLILQK---------RDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVI 201
P+Q++ IP IL+ RDI A TGSGKT AF +P+++ L + VRA++
Sbjct: 162 PVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQ-LLSQRVDCKVRALV 220
Query: 202 LSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQ--------FGMMMGNPDVVIAT 253
+ P ELA+Q +RV E ++L LL+ LED+ G D+V+ T
Sbjct: 221 VLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTT 280
Query: 254 PGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQL--------------------- 291
PGR + HL LKS++++V DEADR+ + FQ L
Sbjct: 281 PGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAGTQAP 340
Query: 292 ---NELLVAFPTNRQTLLFSATL---PSSLVD--------FAKAGLSNPVLVRLDAETKI 337
EL +F LLFSATL P L D FA L+ PVL E
Sbjct: 341 LCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATV-LTMPVLKDATEEGAD 399
Query: 338 SENL--EMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXX 395
+E L F+ E Y + E P+ + ++K K +
Sbjct: 400 TEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWK-------------- 445
Query: 396 XXXXXXXXXXXRRLPNANEMPSEKAT-IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQ 454
R L N S++AT + FV +Y T+ VS + G L+
Sbjct: 446 -----------RFLCFTNS--SDQATRLTFVLKVLFQKYSTK--------VSELSGNLSA 484
Query: 455 HARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGN 514
R ++L +F AG + L+ +D ARG+D+ + V++Y P +IHRVGRTARAG
Sbjct: 485 KVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGR 544
Query: 515 RGWAFSIVS 523
+G A ++++
Sbjct: 545 KGTAVTVLT 553
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 128 bits (322), Expect = 4e-29
Identities = 107/428 (25%), Positives = 191/428 (44%), Gaps = 52/428 (12%)
Query: 102 TNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLIL 161
T S ++ ++ + +D++ ++ +GL + +L I GF P+ IQ+ I I+
Sbjct: 14 TRSSGTEIREFEDLRSDSSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPII 73
Query: 162 QKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSK 221
RDI A++G+GKT AF + ++ ++ + ++L+ +RE+A Q F++
Sbjct: 74 DGRDIRAQAQSGTGKTGAFAVAALQICDM--SQDVTQILVLASTREIAAQNAARFEDLGC 131
Query: 222 GSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADR 281
R LL+GG + + P +V+ TPGR H+ L + +++ V DEAD
Sbjct: 132 FMGARVALLSGGSPIAADKVALEKKPHIVVGTPGRVEHMININELSMDNIKLFVIDEADE 191
Query: 282 LFEMGFQEQLNELLVAFPTNR---QTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKIS 338
+ + GFQEQ+ + TN+ Q +FSAT + ++ L NPV++ L +
Sbjct: 192 MLKAGFQEQVKSIFRRI-TNKDEVQIAMFSATYDEEELRVSEEILINPVIIDLRYNDQTL 250
Query: 339 ENLEMLFISIKKDE--REANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXX 396
+ + FI ++K+ R+ YLL + + + Q +L Q
Sbjct: 251 KGIRQYFIDLRKEPPFRKGREDYLLPKLVTLYDIFRKQ--RLGQ---------------- 292
Query: 397 XXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHA 456
+IVF+ ++ V L + I L Q
Sbjct: 293 ------------------------SIVFINSKEDARIVYDWLIRHEWECELISAELTQAE 328
Query: 457 RKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSK--IFIHRVGRTARAGN 514
R++ L FR G L+ + + +RG+DI L+ V +P + +IHR+GR+ R G
Sbjct: 329 RERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGR 388
Query: 515 RGWAFSIV 522
+G A +IV
Sbjct: 389 KGIAINIV 396
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 128 bits (321), Expect = 5e-29
Identities = 83/243 (34%), Positives = 132/243 (54%), Gaps = 9/243 (3%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F GL +L ++ G+ +PT IQ K IPL L+ +D++ ARTGSGKTAA+ +PM++
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 188 LKTHSA-----KIGVRAVILSPSRELAIQTHRVFKEFSK--GSDLRSILLTGGDSLEDQF 240
L A + VR ++L P++ELA Q + ++ + D+R ++ + Q
Sbjct: 69 LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128
Query: 241 GMMMGNPDVVIATPGRFLHLKVEMNLDLK-SVEYVVFDEADRLFEMGFQEQLNELLVAFP 299
++M PDVV+ TP R L + +L L+ S+E +V DEAD LF GF+E+L LL P
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLP 188
Query: 300 TNRQTLLFSATLPSSLVDFAKAGLSNPVLVRL-DAETKISENLEMLFISIKKDEREANLL 358
Q L SAT + + L NPV ++L +++ + L+ + + +E + LL
Sbjct: 189 RIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLL 248
Query: 359 YLL 361
Y L
Sbjct: 249 YAL 251
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 127 bits (319), Expect = 8e-29
Identities = 84/258 (32%), Positives = 134/258 (51%), Gaps = 9/258 (3%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
FA +S + + T +Q IP L RDI+G ARTGSGKT AFV+P++EK
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 188 LKTH--SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMG 245
L S + GV +I+SP+RELA QT V + K + LL GG D +
Sbjct: 133 LHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVH 192
Query: 246 NPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQT 304
++++ PGR L H+ N + ++ ++ DEADR+ + F+ QL+ ++ P +RQT
Sbjct: 193 EMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQT 252
Query: 305 LLFSATLPSSLVDFAKAGLSNPVLVRLDAE------TKISENLEMLFISIKKDEREANLL 358
LLFSAT + D A+ L +P + + AE T + + + ++ + K D + +
Sbjct: 253 LLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSFIK 312
Query: 359 YLLQEAIKMPVATESQIK 376
L I + ++T+ Q+K
Sbjct: 313 THLNSRILVFLSTKKQVK 330
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 126 bits (316), Expect = 2e-28
Identities = 109/415 (26%), Positives = 187/415 (44%), Gaps = 91/415 (21%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F+ +S +L +S+ RQP+PIQ ++IP + ++R+++ A TGSGKT AF LP+I++
Sbjct: 128 FSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDE 187
Query: 188 L----------KTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLE 237
+ ++S+K+ AV+L P+RELA QT+ F ++ + + + +G ++
Sbjct: 188 ILELKQRADYSSSNSSKL--LAVVLEPTRELAAQTYTEFLKYCANTSISAANFSGEET-- 243
Query: 238 DQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMG------FQEQ 290
+ + D++++TP R + HL +D S+ ++V DE+DRLFE+ F+ Q
Sbjct: 244 -----DIQHADILVSTPNRIVFHLD---KIDTSSLRWLVVDESDRLFEVVEGQDKCFRNQ 295
Query: 291 LNELLVAFPTN-RQTLLFSATLPSSLVDFAKAGLSNPVLV----RLDAETKISENLEMLF 345
L + A + FSAT + + K + +V R + T + + L
Sbjct: 296 LAAIYKACDAKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKLTYCG 355
Query: 346 ISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXX 405
+D ++ + LL+ + K P
Sbjct: 356 T---EDGKKIAIRNLLRTSFKPPA------------------------------------ 376
Query: 406 XRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLK--NCGYLVSYIYGALNQHARKQQLYN 463
+VFV ++ + +LL + V I + R + +
Sbjct: 377 ----------------LVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMER 420
Query: 464 FRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWA 518
FR G +LV T++ RG+D+ + VINY LP S +IHRVGRT RAG G A
Sbjct: 421 FRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHA 475
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 125 bits (313), Expect = 4e-28
Identities = 101/391 (25%), Positives = 175/391 (43%), Gaps = 49/391 (12%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F S LS+ VL + GF +P+P+Q K IPL D++ A++G+GKT F ++
Sbjct: 64 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 123
Query: 188 LKTHSAKIGVRAVILSPSRELAIQTHRVFKEFS-KGSDLRSILLTGGDSLEDQFGMMMGN 246
L + + + +IL+P+RE+A+Q H V K L + GG L Q +
Sbjct: 124 LVLEN--LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPL-SQDKTRLKK 180
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMG-FQEQLNELLVAFPTNRQTL 305
+ + +PGR L L+ S+ + DEAD+L E G FQEQ+N + + P ++Q L
Sbjct: 181 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML 240
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAI 365
SAT P L + + +P VRL++ + I +K+ + N L +
Sbjct: 241 AVSATYPEFLANALTKYMRDPTFVRLNSS-------DPSLIGLKQYYKVVNSYPLAHKVF 293
Query: 366 KMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFV 425
E + + L++ + +P +A +VF
Sbjct: 294 ------EEKTQHLQEL------------------------------FSRIPFNQA-LVFS 316
Query: 426 PTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIP 485
+++ +L + G+ I G +NQ+ R + + +L+ TD+ +RG+D
Sbjct: 317 NLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAE 376
Query: 486 LLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
+ V+N +P + ++HR+GR R G G
Sbjct: 377 KVNLVVNLDVPLDWETYMHRIGRAGRFGTLG 407
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 125 bits (313), Expect = 4e-28
Identities = 116/449 (25%), Positives = 202/449 (44%), Gaps = 64/449 (14%)
Query: 96 DDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLI----NISKKGFRQPTP 151
DD+ ++DD D+ + K + ASF K++ N+ + +PTP
Sbjct: 702 DDKMFEDAVNNDDKIDFDQKVVASTGKVEIPDMASFDGFKILPQDLHDNLKRMKMNRPTP 761
Query: 152 IQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTH--------SAKIGVRAVILS 203
IQR + I+ D+V A TGSGKT AF++P + KL K R +I++
Sbjct: 762 IQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVA 821
Query: 204 PSRELAIQTHRVFKEFSKGSDLRSILLTGGDS--LEDQFGMMMGNPDVVIATPGRFLHLK 261
P+REL QT ++ + + L+ L GG S Q ++++AT GR
Sbjct: 822 PTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFV 881
Query: 262 VEMNLDLKSVEYVVFDEADRLFEMG-FQEQLNELLVAFPTNR--QTLLFSATLPSSLV-- 316
+ L ++Y+V DEADR+ + F E++++ ++ P R QT+LFSA+ L
Sbjct: 882 NAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSK-IIGSPGERTQQTVLFSASFSEDLQSD 940
Query: 317 DFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIK 376
D K ++++D +E ++ + + + E+ ++AI + +
Sbjct: 941 DLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEK--------RDAIYKLLGIDENTV 992
Query: 377 KLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEK-ATIVFVPTRHHVEYVT 435
L LP+A P EK T++FV + + +
Sbjct: 993 TL------------------------------LPDA---PIEKQKTLIFVNSVKFCDTLA 1019
Query: 436 QLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSL 495
L+ + G ++ NQ R + L +FR G +V ++V ARG++I L +V+NY +
Sbjct: 1020 ALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKYQCMVASNVCARGLNIAGLDHVVNYDM 1079
Query: 496 PGSSKI--FIHRVGRTARAGNRGWAFSIV 522
P + +++R+GRT RAG G + + V
Sbjct: 1080 PDKNGFDEYVNRIGRTGRAGFTGTSTAFV 1108
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 123 bits (309), Expect = 1e-27
Identities = 85/238 (35%), Positives = 117/238 (48%), Gaps = 20/238 (8%)
Query: 96 DDEKKATNESDDDLNDYFNTTADAAAKHKKG----------SFASFGLSKLVLINISKKG 145
D ++KA+ E D+ +D + ++ K K G + + F +S + + G
Sbjct: 56 DKKRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKFRISAPLREKLKANG 115
Query: 146 FRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVR------- 198
PIQ T ++L D+VG ARTG GKT AFVLP++E L AK +
Sbjct: 116 IEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSP 175
Query: 199 -AVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRF 257
++L P+RELA Q F + L S L GGDS Q G + D+V+ TPGR
Sbjct: 176 SVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRI 235
Query: 258 LHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL--VAFPTNRQTLLFSATLPS 313
NLD +++ V DEAD + MGF E + +L V T QTLLFSATLPS
Sbjct: 236 KDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPS 293
Score = 61.2 bits (147), Expect = 7e-09
Identities = 39/101 (38%), Positives = 55/101 (53%), Gaps = 4/101 (3%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
TI+F T+ V ++ LL L +G + Q R+ L FR G + LV T+VAAR
Sbjct: 353 TIIFAETKVQVSELSGLLDGSRAL----HGEIPQSQREVTLAGFRNGKFATLVATNVAAR 408
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSI 521
G+DI + +I P + +IHR GRT RAGN G A ++
Sbjct: 409 GLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL 449
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 123 bits (308), Expect = 2e-27
Identities = 86/249 (34%), Positives = 140/249 (55%), Gaps = 16/249 (6%)
Query: 90 PSLELSDDEKKATNESDDDLNDYFNTTADAAAKHKKG----SFASFGLSKLVLINISKKG 145
P++E++ K T+++ ++ F+T + + G ++A F LS +L ++SK G
Sbjct: 86 PTIEMTSLGSKVTSKNYNE----FSTLEEEDEHNSHGVDVSAWAHFSLSPEMLGSLSKAG 141
Query: 146 FRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK-LKTHSAKIGVRAVILSP 204
F +P PIQ IP DI+G A TGSGKT AF +P++E L+ AK V+A++++P
Sbjct: 142 FSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKY-VQALVVAP 200
Query: 205 SRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEM 264
+RELA Q + F+ ++R + +TGG +++ Q ++ +P VV+ATPGR + E
Sbjct: 201 TRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINEN 260
Query: 265 NL--DLKSVEYVVFDEADRLFEMGFQEQLNELLV----AFPTNRQTLLFSATLPSSLVDF 318
NL + K ++ +V DEADRL + E+L++LL T RQT +FSAT L
Sbjct: 261 NLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQR 320
Query: 319 AKAGLSNPV 327
K + +
Sbjct: 321 LKKNMKGNI 329
Score = 68.9 bits (167), Expect = 4e-11
Identities = 36/96 (37%), Positives = 55/96 (56%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
T+VF ++ +T L ++ L+Q R Q L F+ +LV TDVAAR
Sbjct: 392 TMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAAR 451
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
G+DIP + +VI+Y +P ++ +++HR GRTARA G
Sbjct: 452 GIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDG 487
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 122 bits (307), Expect = 2e-27
Identities = 128/469 (27%), Positives = 205/469 (43%), Gaps = 49/469 (10%)
Query: 86 DSKFPSLELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKK- 144
DS+F S L ++ T + +++D + A K FAS G+S L++ ++ +K
Sbjct: 104 DSQFVS-SLFTSNREITTAVNTNIHDENVAINPSNAPLKGDQFASLGVSSLLVSHLEQKM 162
Query: 145 GFRQPTPIQRKTIPLILQ---KRDIVGMARTGSGKTAAFVLPMIE---KLKTHSAKI-GV 197
++PT IQ++ IP I+ K D A+TGSGKT +++LP+I + TH + G
Sbjct: 163 RIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGA 222
Query: 198 RAVILSPSRELAIQTHRVFKEF-SKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGR 256
A++++P+RELA Q + V S L LL GG+ + + + + +I TPGR
Sbjct: 223 FALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGR 282
Query: 257 FL-HL---KVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVA---FPTNRQT----- 304
L HL KV +S+ Y+V DE D+L E+GF E ++E++ P N +
Sbjct: 283 VLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLP 342
Query: 305 -----LLFSATLPSSLVDFAKAGL------SNPVLVRLDAETKISENLEMLFISIKKDER 353
+L SATL + L SN D T + L + R
Sbjct: 343 HKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITIVPPKLR 402
Query: 354 EANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNAN 413
L L K +A+ Q K L+ + L +
Sbjct: 403 LVTLAATLNNITKDFIASGQQSKTLR--TIVFVSCSDSVEFHYDAFSGSDGHHKNLTGDS 460
Query: 414 EMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNF------RAG 467
K +F ++ ++ ++G+L+Q R L +F G
Sbjct: 461 VRLLTKGNTMFPCFSDS--------RDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKG 512
Query: 468 LTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
I+ TDVA+RG+D+P + +VI P + + +HRVGRTARAG +G
Sbjct: 513 KHLIMFCTDVASRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEKG 561
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 122 bits (306), Expect = 3e-27
Identities = 82/247 (33%), Positives = 138/247 (55%), Gaps = 8/247 (3%)
Query: 124 KKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLP 183
K F L + +L +++ G++QPT IQ IPL+L+ +D+V ARTGSGKTA + LP
Sbjct: 7 KTVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALP 66
Query: 184 MIEKL---KTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLED-- 238
+I+K+ K ++++ V AV+L+P+++L Q+ +V ++ + + DS D
Sbjct: 67 LIQKILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTV 126
Query: 239 -QFGMMMGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLV 296
Q + +PD+V+ATP L + + +DLK VE +V DEAD +F G+++ L+
Sbjct: 127 TQRHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIK 186
Query: 297 AFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRL-DAETKISENLEMLFISIKKDEREA 355
P Q +L SATL +V L+NPV ++L + E + L I +++++ A
Sbjct: 187 HLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPA 246
Query: 356 NLLYLLQ 362
L LL+
Sbjct: 247 ILYALLK 253
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 121 bits (303), Expect = 6e-27
Identities = 75/247 (30%), Positives = 131/247 (52%), Gaps = 8/247 (3%)
Query: 118 DAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKT 177
D +HK +FA FGL + +L +I + G+ + +Q I L L+ ++I+G ARTGSGKT
Sbjct: 83 DFEPEHK--TFADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKT 140
Query: 178 AAFVLPMIEKL----KTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGG 233
AF++P+++KL KT+ +G AVI++P++EL Q +++F + S+ +
Sbjct: 141 GAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCD 200
Query: 234 DSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNE 293
+ E+ + VV+ TPG+ L + V Y+V DEAD L G++E++ +
Sbjct: 201 INEEENSVWLEDRSHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEADLLLSFGYEEEMIK 260
Query: 294 LLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVL-VRL-DAETKISENLEMLFISIKKD 351
+ P Q L+ SATL + K ++ PV+ ++L + + S+ L ++ D
Sbjct: 261 IRSKLPPTYQCLMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSD 320
Query: 352 EREANLL 358
E +L
Sbjct: 321 EERFAIL 327
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 120 bits (300), Expect = 1e-26
Identities = 75/244 (30%), Positives = 133/244 (53%), Gaps = 15/244 (6%)
Query: 90 PSLELSDDEKKATNESDDDLNDYFNTT----ADAAAKHKKGSFASFGLSKLVLINISKKG 145
P+ ++ + EKK+ S D + + ++ + K+G+F++F +S+ + + +G
Sbjct: 97 PNGDIDEYEKKSKRVSSLDTSTHKSSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRG 156
Query: 146 FRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKI----GVRAVI 201
PIQ KT + + +D++ ARTG+GKT +F +P+IE+L+ + I + ++
Sbjct: 157 VTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLV 216
Query: 202 LSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLK 261
L+P+RELA Q + FK+ ++ L GG S + Q + D+++ TPGR
Sbjct: 217 LAPTRELANQVAKDFKDITR--KLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHL 274
Query: 262 VEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL-VAFPT----NRQTLLFSATLPSSLV 316
LDL + +VV DE D++ ++GF EQ+ +++ ++ T N QTLLFSAT P +
Sbjct: 275 QSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVY 334
Query: 317 DFAK 320
AK
Sbjct: 335 KVAK 338
Score = 60.8 bits (146), Expect = 1e-08
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 417 SEKATIVFVPTRHHVEYVTQLLKN--CGYLVSYIYGALNQHARKQQLYNFRAGLTSILVV 474
SE I+F T+ +V T++ N ++G + Q R+ L FR G +LV
Sbjct: 388 SEGRAIIFCETKKNV---TEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVA 444
Query: 475 TDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
T+VAARG+DIP + VI S P + +IHR GRT RAG G
Sbjct: 445 TNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTG 486
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 119 bits (298), Expect = 2e-26
Identities = 62/226 (27%), Positives = 125/226 (54%), Gaps = 2/226 (0%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF G++ VL + G+++P+ IQ++ + IL+ RD++ A++G+GKT+ + + +
Sbjct: 23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ 82
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
+ S K+ V ++LSPSRELA QT + + +++++ GG S+ + +
Sbjct: 83 IVNISSRKVQV--LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERG 140
Query: 247 PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
V TPGR + +L K+V+ +V DE+D + G ++Q+ ++ A P + Q L
Sbjct: 141 VHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCL 200
Query: 307 FSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDE 352
SATLP +++ + +++PV + + + E ++ ++ + K+E
Sbjct: 201 ISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEE 246
Score = 82.0 bits (201), Expect = 4e-15
Identities = 39/124 (31%), Positives = 69/124 (55%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
I+F TR V+++T+ +++ ++VS ++G Q R + FR+ + +L+ +DV ARG
Sbjct: 265 IIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARG 324
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXXXXXGKKI 541
+D+ +++VINY +P + +++IHR+GR R G G A + V G KI
Sbjct: 325 IDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKI 384
Query: 542 LLTP 545
P
Sbjct: 385 REMP 388
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 119 bits (297), Expect = 3e-26
Identities = 81/247 (32%), Positives = 130/247 (51%), Gaps = 16/247 (6%)
Query: 83 PIVDSKFPSLELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINIS 142
P + + FP E + +A +E + + + K+G+F++F +S+ + +
Sbjct: 80 PKLKNGFPHPEPDCNPSEAASEESNS-----EIEQEIPVEQKEGAFSNFPISEETIKLLK 134
Query: 143 KKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKL--KTHSAKIG--VR 198
+G PIQ KT + +D++ ARTG+GKT +F +P+IEKL + K G +
Sbjct: 135 GRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQ 194
Query: 199 AVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL 258
++L+P+RELA Q + F + +K L GG QF M D+++ TPGR
Sbjct: 195 VLVLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIK 252
Query: 259 HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL-VAF----PTNRQTLLFSATLPS 313
LDL +++VV DE D++ +MGF +Q+ E+L VA+ N QTLLFSAT P
Sbjct: 253 DHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPH 312
Query: 314 SLVDFAK 320
+ + AK
Sbjct: 313 WVFNVAK 319
Score = 59.7 bits (143), Expect = 2e-08
Identities = 38/98 (38%), Positives = 54/98 (54%), Gaps = 5/98 (5%)
Query: 421 TIVFVPTRHHVEYVTQ--LLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVA 478
TI+F T+ + ++Q +K ++G + Q R+ L FR G +LV T+VA
Sbjct: 373 TIIFCETKKEAQELSQNSAIKQDA---QSLHGDIPQKQREITLKGFRNGSFGVLVATNVA 429
Query: 479 ARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
ARG+DIP + VI S P + +IHR GRT RAG G
Sbjct: 430 ARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTG 467
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 118 bits (295), Expect = 5e-26
Identities = 67/229 (29%), Positives = 126/229 (54%), Gaps = 5/229 (2%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F S L +L I GF P+ IQ + I I+ +D++ A++G+GKTA F + +++
Sbjct: 24 TFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ 83
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN 246
+ K ++A+ILSP+RELA Q +V K ++ + +TGG +L+D M +
Sbjct: 84 AIDLR--KKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
Query: 247 P-DVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE--MGFQEQLNELLVAFPTNRQ 303
V TPGR L + + L ++V+ +V DEAD L +GF++Q+ ++ P N Q
Sbjct: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201
Query: 304 TLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDE 352
++ SAT+ +++ + +++PV + + + E ++ +++ K+E
Sbjct: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEE 250
Score = 75.9 bits (185), Expect = 3e-13
Identities = 35/102 (34%), Positives = 64/102 (62%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
++F T+ V++++Q L + V ++G + Q R + + +FR G + +L+ TDV ARG
Sbjct: 269 VIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARG 328
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
+D+ ++ VINY LP + +IHR+GR+ R G +G A + ++
Sbjct: 329 IDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFIT 370
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 118 bits (295), Expect = 5e-26
Identities = 71/209 (33%), Positives = 115/209 (54%), Gaps = 6/209 (2%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+F+ F L + I K F +PT +Q +TIPL L+ +D+V ARTGSGKTAA+++P++E
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 187 KL----KTHSAKIGVRAVILSPSRELAIQTHRVFKEFSK--GSDLRSILLTGGDSLEDQF 240
L + + G+ A++L P+RELA Q + V ++ + +R I + S Q
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
Query: 241 GMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT 300
+++ PD+VIATP R + L L ++++V DEAD + G+ E + L + P
Sbjct: 135 PLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPR 194
Query: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVLV 329
Q+ L SATL ++ K NP ++
Sbjct: 195 GTQSFLMSATLSKNIASLQKLVCRNPFIL 223
Score = 51.2 bits (121), Expect = 8e-06
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 479 ARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
ARG+D +A V+N+ +P ++K +IHR+GRTARAG G A S V
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFV 430
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 118 bits (295), Expect = 5e-26
Identities = 115/454 (25%), Positives = 195/454 (42%), Gaps = 72/454 (15%)
Query: 87 SKFPSLELSDDEKK-ATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINIS-KK 144
S+ SL + ++EK + E +D N T+ D F LS ++ + +
Sbjct: 52 SELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYT-SASRFEDLNLSPELMKGLYVEM 110
Query: 145 GFRQPTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVIL 202
F +P+ IQ ++P+I+ + ++ A GSGKT FVL M+ ++ + +A+ +
Sbjct: 111 KFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLRE--PQALCI 168
Query: 203 SPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNP---DVVIATPGRFLH 259
P+RELA Q V ++ K + + + L DS G P VVI TPG
Sbjct: 169 CPTRELANQNMEVLQKMGKFTGITAELAVP-DSTRGAPAATRGAPVSAHVVIGTPGTLKK 227
Query: 260 LKVEMNLDLKSVEYVVFDEADRLFEM-GFQEQLNELLV---AFPTNRQTLLFSATLPSSL 315
L L ++ +VFDEAD + GF++ +++ N Q LLFSAT ++
Sbjct: 228 WMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETV 287
Query: 316 VDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQI 375
DF + +P N L++ +E + + + ++
Sbjct: 288 KDFVARTVKDP-----------------------------NQLFVKREDLALDSVKQYKV 318
Query: 376 KKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVT 435
K+QN E+ TI+FV T+ + V
Sbjct: 319 VCPKEQNKIEVIK---------------------DQIMELGDIGQTIIFVKTKASAQKVH 357
Query: 436 QLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSL 495
+ L GY V+ ++G L + R + + F+ LT +L+ TDV ARG D + V+NY+L
Sbjct: 358 KALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNL 417
Query: 496 P-------GSSKIFIHRVGRTARAGNRGWAFSIV 522
P ++++HRVGR R G +G F+++
Sbjct: 418 PTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLL 451
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 116 bits (291), Expect = 1e-25
Identities = 94/332 (28%), Positives = 165/332 (49%), Gaps = 40/332 (12%)
Query: 200 VILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLH 259
++L+P+RELA+Q + ++ + +++ +L GG S + Q M+ P++V+ATPGR
Sbjct: 391 LVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWE 450
Query: 260 LKVEMNL---DLKSVEYVVFDEADRLFEMGFQEQLNELL-----VAFPTNRQTLLFSATL 311
L E + +L+ + +V DEADR+ E G +L++LL + RQTL+FSATL
Sbjct: 451 LIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATL 510
Query: 312 PSSLVDFAKAG-LSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVA 370
+LV A A L ++D K+ +L M I ++ + ++ L + +
Sbjct: 511 --TLVHQAPARILHKKHTKKMDKTAKL--DLLMQKIGMR---GKPKVIDLTRNEATVETL 563
Query: 371 TESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHH 430
TE++I + M ++VF +
Sbjct: 564 TETKIHCETDEKDFYLYYFL------------------------MQYPGRSLVFANSISC 599
Query: 431 VEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANV 490
++ ++ LLK + ++ ++Q R + L F +L+ TDVAARG+DIP + +V
Sbjct: 600 IKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHV 659
Query: 491 INYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
I+Y +P +S+I++HR GRTARA N G + ++
Sbjct: 660 IHYQVPRTSEIYVHRSGRTARATNEGLSLMLI 691
Score = 52.0 bits (123), Expect = 4e-06
Identities = 29/50 (58%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 137 VLINISKKGFRQPTPIQRKTI-PLILQKRDIVGMARTGSGKTAAFVLPMI 185
VL +S GF PTPIQ T+ P I K DI+G A TGSGKT AF +PMI
Sbjct: 203 VLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMI 252
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 115 bits (288), Expect = 3e-25
Identities = 90/388 (23%), Positives = 175/388 (44%), Gaps = 62/388 (15%)
Query: 133 LSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHS 192
L + +L I GF +P+ IQ+ + +D+ ++ GSGKT ++ +++ +
Sbjct: 3 LKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDCED 62
Query: 193 AKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIA 252
A + V ++L+P R +A + H K + ++ + L G D+ + + V++
Sbjct: 63 AHLQV--ILLAPQRGMAQRAHEQLKSLGRNLNVNATCL-GFDTTAENDKIS----HVLMG 115
Query: 253 TPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLP 312
TP FL + D ++ V DEAD + GF++Q+ E+ + P + Q +L SAT+P
Sbjct: 116 TPKDFLS---NIPSDTSRIKMFVLDEADEMLSKGFKDQIYEVFRSMPQDVQVVLLSATMP 172
Query: 313 SSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATE 372
S ++D + +P+ + + + E + +I+++KDE + N L L + + E
Sbjct: 173 SEVLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDL-----LKTSRE 227
Query: 373 SQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVE 432
+Q ++F TR V
Sbjct: 228 TQ----------------------------------------------ALIFCNTRRRVT 241
Query: 433 YVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVIN 492
+T+ L + VS +G + + R+ + +F + T +LV TD+ ARG++I + +IN
Sbjct: 242 QLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMARGMNI-RKSLIIN 300
Query: 493 YSLPGSSKIFIHRVGRTARAGNRGWAFS 520
Y + G+ + ++ R GR G++G S
Sbjct: 301 YDVSGNMENYMLRNGRQGNFGSKGLPIS 328
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 115 bits (287), Expect = 4e-25
Identities = 113/417 (27%), Positives = 176/417 (42%), Gaps = 43/417 (10%)
Query: 198 RAVILSPSRELAIQTHRVFKEFSKGSD---LRSILLTGGDSLEDQFGMMMGNPDVVIATP 254
+A+I+ PSRELA QT K+F K D LR +L+ GG + DQ ++ D+V+ TP
Sbjct: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP 347
Query: 255 GRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFP------TNRQTLLFS 308
GR L L+L V ++V DEAD L G+ + +N + P Q ++ S
Sbjct: 348 GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS 407
Query: 309 ATLPS-SLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIK-KDEREANLLYLLQEAIK 366
ATL S + ++ + P V L E + + + + + + K +R L + K
Sbjct: 408 ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR------LWERLGK 461
Query: 367 MPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVP 426
+ T+ K N R + E ++A I+F
Sbjct: 462 SHIRTDDVHAK---DNTRPGANSPEMWSEAIKILKGEYAVRAI---KEHKMDQA-IIFCR 514
Query: 427 TRHHVEYVTQLL---------KNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDV 477
T+ + + Q K + ++G H RKQ L F+ G L+ TDV
Sbjct: 515 TKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV 574
Query: 478 AARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXXXXX 537
AARG+DI + VIN +LP + ++HR+GR RA G A S+V+
Sbjct: 575 AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR 634
Query: 538 GKKILLTPMYE-SSCQI----LRKKAESEGNNNFTDPKVSYTTRMVLGACPRSEIDG 589
GK T + E C I ++ +E E + N T +V ++ P E DG
Sbjct: 635 GKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKV-----PVDEFDG 686
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 114 bits (285), Expect = 7e-25
Identities = 80/260 (30%), Positives = 134/260 (50%), Gaps = 13/260 (5%)
Query: 112 YFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQ-KRDIVGMA 170
Y + + A +F +F L +L I GF+ PT IQ IPL LQ KRDI+ A
Sbjct: 3 YEKKSVEGAYIDDSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKA 62
Query: 171 RTGSGKTAAFVLPMIEKLKTHSAKI------GVRAVILSPSRELAIQTHRVFKEFSK--G 222
TGSGKT A+++P+IE + + I G +IL P+RELA Q + V ++
Sbjct: 63 ATGSGKTLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCS 122
Query: 223 SDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLH-LKVEMN-LDLKSVEYVVFDEAD 280
D+R++ ++ S ++M P++++ TPG+ L L+ ++N + L ++++V DE D
Sbjct: 123 KDIRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVD 182
Query: 281 RLFEMGFQEQLNELLVAFP--TNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKIS 338
+ G+Q+ LN++ P N QT L SATL + + +P +++ + E
Sbjct: 183 LVLTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINK 242
Query: 339 ENLEMLFISIKKDEREANLL 358
++L +K E + LL
Sbjct: 243 NQNKLLQYYVKVSEFDKFLL 262
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 114 bits (285), Expect = 7e-25
Identities = 103/403 (25%), Positives = 181/403 (44%), Gaps = 73/403 (18%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F+ GLS +L I +GF +P+ IQ+ IP IL+ ++V +++G+GKT A+ ++
Sbjct: 53 FSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAYTCGVLG- 111
Query: 188 LKTHSAKIGVRA--VILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMG 245
+ KIG R ++++P+REL+ Q V + ++ + + + D G
Sbjct: 112 ----NTKIGERTQVMVVTPTRELSTQVTEVISGLAGPLGIK-VFSALKNKITDSIG---- 162
Query: 246 NPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
+VV+ +PG L L L+ K V+ +V DEAD L L++ ++ T R
Sbjct: 163 -EEVVVGSPGTILKLMELGKLNYKGVKMIVLDEADIL--------LDKDMMGTQTFRILK 213
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDER-EANLLYLLQEA 364
L S +M+F S E+ + + + +A
Sbjct: 214 LISGA-------------------------------QMIFFSATFSEQVKQTIEFYAPDA 242
Query: 365 IKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVF 424
+KM + ++K R L + E S I+F
Sbjct: 243 VKMYEERNGKPDEIK---------------LFYIEAEGENKRRALKSLYEYLSISQMIIF 287
Query: 425 VPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDI 484
V T+ V Y+ + L++ + VS ++G L R++ + +FR+ + IL+ TDV +RG+DI
Sbjct: 288 VSTKATVNYLRKKLEDDLHSVSCLHGDLEIEEREKAVGDFRSSKSKILLTTDVFSRGMDI 347
Query: 485 PLLANVINYSLP-----GSSKIFIHRVGRTARAGNRGWAFSIV 522
P + ++NY LP S++ +IHR+GR+ R G G+ V
Sbjct: 348 PQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFGRTGFVVDFV 390
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 112 bits (279), Expect = 4e-24
Identities = 99/377 (26%), Positives = 171/377 (45%), Gaps = 38/377 (10%)
Query: 158 PLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFK 217
P L+ RD+ A TGSGKT +VLP++ + + +KI ++AVIL P + L Q FK
Sbjct: 254 PPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKI-LQAVILVPVQTLVAQIVDEFK 312
Query: 218 EFSKGSDLRSIL-LTGGDSLEDQFGMMMGN-PDVVIATPGRFL-HL--KVEMNLDLKSVE 272
++ S + ++ L+G + E + + + P+V++ATP R + HL K+ +DL +
Sbjct: 313 RWNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLSKLR 372
Query: 273 YVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLD 332
+++ DEADR+ ++ +E L+ LV+F G+ ++
Sbjct: 373 FLIVDEADRMGKLMREEWLD----------------------LVEFLCGGMERVACLKDI 410
Query: 333 AETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQ---QNXXXXXXX 389
+ + +L ++ KD E +L L + ++ AT +K + Q
Sbjct: 411 IRQRRAPQKIVLSATLSKDVEELHLWNLFKP--RLFSATAVSVKDITSGIPQVDHVSGRL 468
Query: 390 XXXXXXXXXXXXXXXXXRRLPNANEMPSEK--ATIVF---VPTRHHVEYVTQLLKNCGYL 444
L ++ K T++F V + + + +V + L +
Sbjct: 469 ALPSSISHRLVVTDPKFHPLAVYQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFE 528
Query: 445 VSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIH 504
V Y L R + L F +L+ +DV ARG D+ + VINY+LP K+F+H
Sbjct: 529 VDYFTAQLFGKRRYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVH 588
Query: 505 RVGRTARAGNRGWAFSI 521
R GRT RAG G+ S+
Sbjct: 589 RAGRTGRAGQDGYVISV 605
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 111 bits (277), Expect = 6e-24
Identities = 66/200 (33%), Positives = 115/200 (57%), Gaps = 17/200 (8%)
Query: 147 RQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKI----GVRAVIL 202
R+ T +Q+KTIP +LQ +D++ ++TGSGKT A+ LP++E L+ +I GV A+++
Sbjct: 349 RELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVI 408
Query: 203 SPSRELAIQTHRVFKEFSKG-SDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HL 260
P+REL +QT+ + ++ K + + L GG+S + + + +++I TPGR + HL
Sbjct: 409 VPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHL 468
Query: 261 KVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNR-----------QTLLFSA 309
+ L +++++ DEADRL E+G++ + +L+ A R Q +L SA
Sbjct: 469 LHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSA 528
Query: 310 TLPSSLVDFAKAGLSNPVLV 329
TL S + A L NP+ +
Sbjct: 529 TLTSQVQQLAGLTLKNPLYI 548
Score = 63.2 bits (152), Expect = 2e-09
Identities = 29/71 (40%), Positives = 46/71 (63%)
Query: 448 IYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVG 507
++G++ Q R+ FR + +L+ TDV RG+D+P + V+ Y+ P ++ F+HRVG
Sbjct: 684 LHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVG 743
Query: 508 RTARAGNRGWA 518
RTARAG +G A
Sbjct: 744 RTARAGRKGRA 754
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 109 bits (273), Expect = 2e-23
Identities = 113/415 (27%), Positives = 182/415 (43%), Gaps = 59/415 (14%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
+FA G S+ ++ + ++ F +P IQ ++ + + ++GSGKT A+++P+I+
Sbjct: 375 TFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434
Query: 187 KLK-------THSAKIGVRAVILSPSRELAIQTHRVFKEFSK-GSDLRSILLTGGDSLED 238
+L+ + S+ R ++L P+ ELA Q + SK G RS+++TGG
Sbjct: 435 RLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRT 494
Query: 239 QFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF-EMGFQEQLNELLVA 297
Q + DV+IATPGRF +L E L L ++ + DE D LF + F+ L L+ +
Sbjct: 495 QLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINS 554
Query: 298 FPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANL 357
P Q L +ATLP + + + +V ++S LE + D+
Sbjct: 555 SPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDD----- 609
Query: 358 LYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPS 417
A K P T Q KK L E P
Sbjct: 610 -----NAEKTP-ETAFQNKK----------------------------TALLQIMEENPV 635
Query: 418 EKATIVF---VPTRHHVEYVTQLL--KNCGYLVSYIYGALNQHARKQQLYNFRAGL---- 468
K TI+F + T VE + + + K V + AL+Q +R + F +
Sbjct: 636 SK-TIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEEN 694
Query: 469 TSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTAR-AGNRGWAFSIV 522
+ LV TD A+RG+D + +V+ + P ++ RVGRTAR A +G AF V
Sbjct: 695 SLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFV 749
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 109 bits (272), Expect = 2e-23
Identities = 102/415 (24%), Positives = 171/415 (40%), Gaps = 71/415 (17%)
Query: 125 KGSFASFGLSKLVLINISKKGFR--QPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVL 182
KGSFA GL VL + + QPT +Q TIP +L+ R +V A TGSGKT +++L
Sbjct: 125 KGSFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLL 184
Query: 183 PMIEKLKTHSAKIGV-----RAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLE 237
P++++L + + R ++L PSRELA Q V + + L L GG +
Sbjct: 185 PLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMR 244
Query: 238 DQFGMMMGNP--DVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELL 295
+ P DV++ATPG + L+ + ++V DEAD L + F E ++ +L
Sbjct: 245 RIRLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYIL 304
Query: 296 V-------------AFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETK---ISE 339
F Q +L AT P + +++P V +K I
Sbjct: 305 EKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNK-VASPDAVTTITSSKLHCIMP 363
Query: 340 NLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXX 399
+++ F+ +K ++ A L+++L
Sbjct: 364 HVKQTFLRLKGADKVAELVHIL-------------------------------------- 385
Query: 400 XXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQ 459
+ A +VF + V ++ +L + + G + R
Sbjct: 386 -------KHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVG 438
Query: 460 QLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGN 514
+F+ IL+ TD+A+RG+D + V+NY P + + +IHR GR R G+
Sbjct: 439 IFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGS 493
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 108 bits (271), Expect = 3e-23
Identities = 103/379 (27%), Positives = 178/379 (46%), Gaps = 56/379 (14%)
Query: 165 DIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSD 224
DI+ A TGSGKT A+ +P+++ L +R +I+ P++ L Q + + ++G+
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQIN-RLRCIIIVPTKLLINQVYTTLTKLTQGTS 287
Query: 225 LRSILLTGGDSLEDQFGMMMG-NPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRL 282
L + +SL+D+ + PD++I TPGR + HL ++ +++LK++++++ DEADRL
Sbjct: 288 LIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMK-SINLKNLKFLIIDEADRL 346
Query: 283 FEMGFQEQLNEL--------LVAFPTNRQTLLFSATLPSSLVDFAKAGLSNP--VLVRLD 332
FQ +L L P N ++FSATL ++ L P L + D
Sbjct: 347 LNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQTD 406
Query: 333 AETKISENLEMLFISI---KKDEREANLLY-LLQEAIKMPVATESQIKKLKQQNXXXXXX 388
++ L I+I K + LLY + Q P+A + I ++
Sbjct: 407 KLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSI---- 462
Query: 389 XXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYI 448
RL ++ E + V + L+N ++ +
Sbjct: 463 -------------------RLSKLLQLICESRS---------QSSVLKNLQNLAVSINSV 494
Query: 449 YGALNQHARKQQLYNF-----RAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFI 503
++ K+ + NF AG+T IL+ TD+ +RG+DI + VINY P SS+ ++
Sbjct: 495 NSNNSKAENKKIVANFSHHSESAGIT-ILITTDIMSRGIDINDITQVINYDPPMSSQQYV 553
Query: 504 HRVGRTARAGNRGWAFSIV 522
HRVGRTARA G A++++
Sbjct: 554 HRVGRTARANELGSAYNLL 572
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 108 bits (271), Expect = 3e-23
Identities = 105/407 (25%), Positives = 176/407 (42%), Gaps = 74/407 (18%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMI- 185
+F GLS+ V+ + + PT IQ IP +++++ +V + TGSGKT A++LP++
Sbjct: 113 NFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172
Query: 186 ---EKLKTHSAKIGV-------RAVILSPSRELAIQT--HRVFKEFSKGSDLRSILLTGG 233
E ++ A +G R V+L P+REL+ Q H+ + + RSIL++GG
Sbjct: 173 VLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQVCLHQDYHH----ARFRSILVSGG 228
Query: 234 DSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNE 293
+ Q + D+V+ TPGR L E N+ + Y+V DEAD +F+ GF ++ +
Sbjct: 229 SRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRK 288
Query: 294 LLVAFPTNRQTL--LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKD 351
L + + + + S LVD G+ + +R K N FI +
Sbjct: 289 FLAPLNQHIKVVNEIVSFQAVQKLVDEEFQGIEH---LRTSTLHKKIANARHDFIKLSGG 345
Query: 352 EREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPN 411
E + L L + ++ +A S++
Sbjct: 346 E---DKLEALLQVLEPSLAKGSKV------------------------------------ 366
Query: 412 ANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFR--AGLT 469
+VF T + V L +G + R + L F+ G
Sbjct: 367 ----------MVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDC 416
Query: 470 SILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
LV TD+AARG+D+ + +V+ + P +S ++HR GRTAR G +G
Sbjct: 417 PTLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARMGAKG 462
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 108 bits (270), Expect = 4e-23
Identities = 81/254 (31%), Positives = 134/254 (51%), Gaps = 57/254 (22%)
Query: 118 DAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKT 177
+ + K K GSF + GL +L NI +G PTPIQRKTIPLIL++R ++G+ RTGSGKT
Sbjct: 2 EKSGKIKGGSFKTMGLDYRLLRNILYEG---PTPIQRKTIPLILERRSLMGVGRTGSGKT 58
Query: 178 AAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLE 237
+++P I++ A G + +++ P++EL IQ RV K ++G +E
Sbjct: 59 LCYLIPAIQR-----AISGEKTLVIVPTKELVIQARRVLKRLARG-------------IE 100
Query: 238 DQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE----MGFQEQLNE 293
+ + + + I TPG+ ++ S + +V DE DR+ E +++NE
Sbjct: 101 EAWKL------IEICTPGK---------IEGMSADMLVVDEIDRILEEPSLKSVFDRINE 145
Query: 294 LLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVR-LDAETKISENLEMLFISIKKDE 352
L + Q + FSATLP +P+ ++ ++ ET+I+E ++ F I +
Sbjct: 146 SL-----SCQKVFFSATLP-----------DHPLNMKVVEIETRINETVKHFFFYIPSES 189
Query: 353 REANLLYLLQEAIK 366
+EA LL +L + K
Sbjct: 190 KEAALLRILDKTRK 203
Score = 73.9 bits (180), Expect = 1e-12
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 419 KATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVA 478
+ TIVF T++ VE + ++L + IY +++ AR+ +F SILVVTDVA
Sbjct: 202 RKTIVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSKFSILVVTDVA 261
Query: 479 ARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAG 513
ARG+DIP L V+NY L + F+HRVGR G
Sbjct: 262 ARGLDIPYLDTVVNYDL-CDERTFLHRVGRVRGMG 295
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 107 bits (268), Expect = 7e-23
Identities = 111/457 (24%), Positives = 186/457 (40%), Gaps = 46/457 (10%)
Query: 99 KKATNESDDDLNDYFNTTADAAA-----KHKKGSFASFGLSKLVLI----NISKKGFRQP 149
KK+ N DD + F AD K+++ SF G + V N++K+ F
Sbjct: 171 KKSNNRQFDDYGEAFGK-ADVIGCLLDLKNQEVSFTKNGQNLGVAFRLPDNLAKETFYPA 229
Query: 150 TPIQRKTIPLILQKRDI--------VGMARTGSGKTAAFVL--PMIEKLKTHSAKIGVRA 199
++ + K D VG + G + A + P A +A
Sbjct: 230 VVLKNAEMQFNFGKTDFKYAPGNGFVGACQAGPEHSKANPITGPAAGAPSAKPAPNAPQA 289
Query: 200 VILSPSRELAIQTHRVFKEFS---KGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGR 256
+I+ PSRELA QT+ ++F ++RS+LL GG LE+Q +M +V+ TPGR
Sbjct: 290 IIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGR 349
Query: 257 FLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFP------TNRQTLLFSAT 310
+ + L + V DEAD L + G+ E ++ L P Q ++ SAT
Sbjct: 350 LEEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVVCSAT 409
Query: 311 LPS-SLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKMPV 369
L + + A+ + P V L E + E + + + + ++++ P+
Sbjct: 410 LHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQ------MDTTWQSLRQPI 463
Query: 370 ATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRH 429
T+ + +A + + I+F T+
Sbjct: 464 GTDG-------VHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQ 516
Query: 430 HVEYVTQLLKNCG---YLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPL 486
+ + + L+ G Y ++G RK+ L F+ L+ TDVAARG+DI
Sbjct: 517 DCDNLERFLRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITG 576
Query: 487 LANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
L +IN +LP ++HR+GR RA G A S+V+
Sbjct: 577 LPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVA 613
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 106 bits (265), Expect = 2e-22
Identities = 61/189 (32%), Positives = 113/189 (59%), Gaps = 9/189 (4%)
Query: 150 TPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKI----GVRAVILSPS 205
T +Q+++IP++L+ RD + ++TGSGKT A+ +P+++ L+ +KI G A++L P+
Sbjct: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
Query: 206 RELAIQTHRVFKEFSKG-SDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVE 263
RELA+Q+ ++ K + + +L GG+ + + + +++I+TPGR + H+K
Sbjct: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKST 374
Query: 264 MNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT---NRQTLLFSATLPSSLVDFAK 320
N+ + ++VFDEADR+ ++GF++ + +L A RQ +L SATL + A
Sbjct: 375 KNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLAD 434
Query: 321 AGLSNPVLV 329
L +PV +
Sbjct: 435 ISLHDPVSI 443
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 106 bits (265), Expect = 2e-22
Identities = 61/189 (32%), Positives = 113/189 (59%), Gaps = 9/189 (4%)
Query: 150 TPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKI----GVRAVILSPS 205
T +Q+++IP++L+ RD + ++TGSGKT A+ +P+++ L+ +KI G A++L P+
Sbjct: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
Query: 206 RELAIQTHRVFKEFSKG-SDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVE 263
RELA+Q+ ++ K + + +L GG+ + + + +++I+TPGR + H+K
Sbjct: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKST 374
Query: 264 MNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT---NRQTLLFSATLPSSLVDFAK 320
N+ + ++VFDEADR+ ++GF++ + +L A RQ +L SATL + A
Sbjct: 375 KNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLAD 434
Query: 321 AGLSNPVLV 329
L +PV +
Sbjct: 435 ISLHDPVSI 443
Score = 60.5 bits (145), Expect = 1e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 448 IYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVG 507
++G + Q R F +L+ TDVAARG+D+P + ++ Y+ P S +IHR+G
Sbjct: 558 LHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIG 617
Query: 508 RTARAGNRGWAFSIVS 523
RTAR G G + I++
Sbjct: 618 RTARIGCHGSSLLILA 633
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 106 bits (264), Expect = 2e-22
Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 15/200 (7%)
Query: 125 KGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPM 184
K F F LS L L I GF+ T +Q T+PLILQ +DI+ A+TG+GKT AF+LP
Sbjct: 79 KTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPS 138
Query: 185 IEK-LKTHSAKIGVR-----AVILSPSRELAIQT---HRVFKEFSKGSDLRSILLTGGDS 235
IE +K A R +++ P+RELA Q + ++ ++ ++ GG
Sbjct: 139 IEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVI--GGTK 196
Query: 236 LEDQFGMMMGNP-DVVIATPGRFL-HLKVEMNL--DLKSVEYVVFDEADRLFEMGFQEQL 291
L + + +P +++ATPGR H+ L V+ +V DEAD L +MGF+ ++
Sbjct: 197 LPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREI 256
Query: 292 NELLVAFPTNRQTLLFSATL 311
++ A P RQT LFSAT+
Sbjct: 257 ERIIAAVPKQRQTFLFSATV 276
Score = 58.5 bits (140), Expect = 5e-08
Identities = 35/95 (36%), Positives = 47/95 (48%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
I+F T V LL V I+ Q R + FR + ILV +DV+ARG
Sbjct: 342 IIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARG 401
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRG 516
VD P ++ V+ LP + +IHR+GRT R G G
Sbjct: 402 VDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEG 436
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 105 bits (262), Expect = 3e-22
Identities = 72/240 (30%), Positives = 121/240 (50%), Gaps = 19/240 (7%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPM 184
SF L +L I F++P+ IQ K +PL+L R+++G +++G+GKTAAF L M
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 185 IEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSIL-----LTGGDSLEDQ 239
+ ++ K +A+ L+PSRELA Q V E K +++++ + G ++ Q
Sbjct: 175 LSRVDASVPK--PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQ 232
Query: 240 FGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEM-GFQEQLNELLVAF 298
+VI TPG + L LD + ++ V DEAD + + G +Q +
Sbjct: 233 ---------IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL 283
Query: 299 PTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLL 358
P N Q +LFSAT + +A+ N +RL E E ++ L++ + +E + N+L
Sbjct: 284 PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVL 343
Score = 59.3 bits (142), Expect = 3e-08
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
+I+F + E + + + G+ V+ + G L R + +FR G + +LV T+V AR
Sbjct: 355 SIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 414
Query: 481 GVDIPLLANVINYSLP------GSSKIFIHRVGRTARAGNRGWAFSIV 522
G+D+ + V+NY +P + ++HR+GRT R G G + + V
Sbjct: 415 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 462
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 105 bits (262), Expect = 3e-22
Identities = 90/385 (23%), Positives = 162/385 (41%), Gaps = 65/385 (16%)
Query: 145 GFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSA----KIGV-RA 199
G + T IQ++ +P++ + A TG GKT ++LP+++KL K+ R
Sbjct: 128 GIKLLTGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRV 187
Query: 200 VILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLH 259
+IL+P RELA Q V ++ ++G++L+ L GG++ + D+++AT G
Sbjct: 188 LILTPGRELATQIAGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSK 247
Query: 260 LKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFP--------TNRQTLLFSATL 311
L ++ V ++V DEAD L + F ++L+ L FP Q +L SAT+
Sbjct: 248 LVTTGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATM 307
Query: 312 PSSLVDFAKAGLSNPVLVRLDAE--TKISENLEMLFISIKKDEREANLLYLLQEAIKMPV 369
P++ + + + + + ++ ++ F+ + K +R A LL L++
Sbjct: 308 PTNTREILHKVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKADRPATLLSLVK------- 360
Query: 370 ATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRH 429
+++ + IVF
Sbjct: 361 -------------------------------------------HDLAKRRPLIVFSNKST 377
Query: 430 HVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLAN 489
++V+ L N G + G + R + F+ G +L TDV +RG+D +
Sbjct: 378 TSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQFQNGHCDVLSTTDVGSRGLDTTRARH 437
Query: 490 VINYSLPGSSKIFIHRVGRTARAGN 514
V+N+ P +IHR GR R GN
Sbjct: 438 VVNFDFPLHVSDYIHRCGRIGRVGN 462
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 100 bits (248), Expect = 1e-20
Identities = 99/431 (22%), Positives = 164/431 (37%), Gaps = 117/431 (27%)
Query: 98 EKKATNESDDDL----NDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQ 153
+KK +D D Y TT + S+ L +L I K G+++ TPIQ
Sbjct: 276 QKKLDEMTDRDWWLFREGYSITTKGGKIPNPIRSWKESSLLPHILEVIDKCGYKESTPIQ 335
Query: 154 RKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTH 213
R+ IP LQ RDI+G R
Sbjct: 336 RQAIPFGLQNRDIIGRDR------------------------------------------ 353
Query: 214 RVFKEFSKGSDLRSILLTGGDSLEDQ-FGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVE 272
+ + + ++ + GG S ED F ++MG ++VIATPG + + L L
Sbjct: 354 ----QVWEAARYPTVAVIGGISREDWGFRLLMGC-EIVIATPGHLIDVLENRYLVLSCCT 408
Query: 273 YVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLD 332
YVV DEADR+ ++GF+ + ++L P + S L +F
Sbjct: 409 YVVLDEADRMIDVGFEPDVQKILEHMPQSEARHDESEDPEKMLANFESG----------- 457
Query: 333 AETKISENLEMLFISIKKDEREANLLYLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXX 392
+ K E +E +F+ + + E+ LL +L++
Sbjct: 458 -KRKPHERVEQVFL-MSESEKRKKLLEILKQGF--------------------------- 488
Query: 393 XXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGAL 452
+ A +FV + + + + L+ GY ++G
Sbjct: 489 -------------------------DPAITIFVNQKKGCDVLAKSLEKMGYNACTLHGGK 523
Query: 453 NQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARA 512
Q R+ L N + G +LV TDVA G+DI ++ V+NY + + +IHR+GR +A
Sbjct: 524 GQEQREFALSNLKPGAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQA 583
Query: 513 GNRGWAFSIVS 523
G G A + ++
Sbjct: 584 GKSGVAITFLT 594
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 98.2 bits (243), Expect = 5e-20
Identities = 98/421 (23%), Positives = 185/421 (43%), Gaps = 79/421 (18%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPM 184
SF L VL + F+ PT IQ +PL+L + +++ A++G+GKTAAFVL M
Sbjct: 210 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 269
Query: 185 IEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSD-LRSILLTGGDSLEDQFGMM 243
+ ++ + + + + L+P+ ELA Q V ++ K D L+ G ++ G
Sbjct: 270 LCRIDVNL--MCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRK 327
Query: 244 MGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEAD-RLFEMGFQE---QLNELLVAF 298
+ +VI TPG +L+ +D + +V DEAD ++ GF + + ++
Sbjct: 328 L-TEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDA 386
Query: 299 PTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLL 358
+ Q++LFSAT +++FA TKI +N ++ + +RE L
Sbjct: 387 SDSVQSMLFSATYDEPVINFA---------------TKIIKNAIVVML-----KREEQAL 426
Query: 359 YLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSE 418
+++ +S+ + N +
Sbjct: 427 PNIKQFYVQCACRDSKYAAIV-------------------------------NLYSGLAV 455
Query: 419 KATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVA 478
++++F T+ V ++ + ++ G+ V ++G + R + +F+ G +L+ T+V
Sbjct: 456 ASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVF 515
Query: 479 ARGVDIPLLANVINYSLP-----------------GSSKIFIHRVGRTARAGNRGWAFSI 521
ARG+D+ ++ VINY LP + ++HR+GRT R G G A ++
Sbjct: 516 ARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINL 575
Query: 522 V 522
+
Sbjct: 576 I 576
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 98.2 bits (243), Expect = 5e-20
Identities = 98/421 (23%), Positives = 185/421 (43%), Gaps = 79/421 (18%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPM 184
SF L VL + F+ PT IQ +PL+L + +++ A++G+GKTAAFVL M
Sbjct: 235 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 294
Query: 185 IEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSD-LRSILLTGGDSLEDQFGMM 243
+ ++ + + + + L+P+ ELA Q V ++ K D L+ G ++ G
Sbjct: 295 LCRIDVNL--MCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRK 352
Query: 244 MGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEAD-RLFEMGFQE---QLNELLVAF 298
+ +VI TPG +L+ +D + +V DEAD ++ GF + + ++
Sbjct: 353 L-TEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDA 411
Query: 299 PTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLL 358
+ Q++LFSAT +++FA TKI +N ++ + +RE L
Sbjct: 412 SDSVQSMLFSATYDEPVINFA---------------TKIIKNAIVVML-----KREEQAL 451
Query: 359 YLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSE 418
+++ +S+ + N +
Sbjct: 452 PNIKQFYVQCACRDSKYAAIV-------------------------------NLYSGLAV 480
Query: 419 KATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVA 478
++++F T+ V ++ + ++ G+ V ++G + R + +F+ G +L+ T+V
Sbjct: 481 ASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVF 540
Query: 479 ARGVDIPLLANVINYSLP-----------------GSSKIFIHRVGRTARAGNRGWAFSI 521
ARG+D+ ++ VINY LP + ++HR+GRT R G G A ++
Sbjct: 541 ARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINL 600
Query: 522 V 522
+
Sbjct: 601 I 601
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 98.2 bits (243), Expect = 5e-20
Identities = 98/421 (23%), Positives = 185/421 (43%), Gaps = 79/421 (18%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPM 184
SF L VL + F+ PT IQ +PL+L + +++ A++G+GKTAAFVL M
Sbjct: 619 SFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTM 678
Query: 185 IEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSD-LRSILLTGGDSLEDQFGMM 243
+ ++ + + + + L+P+ ELA Q V ++ K D L+ G ++ G
Sbjct: 679 LCRIDVNL--MCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRK 736
Query: 244 MGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEAD-RLFEMGFQE---QLNELLVAF 298
+ +VI TPG +L+ +D + +V DEAD ++ GF + + ++
Sbjct: 737 L-TEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDA 795
Query: 299 PTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLL 358
+ Q++LFSAT +++FA TKI +N ++ + +RE L
Sbjct: 796 SDSVQSMLFSATYDEPVINFA---------------TKIIKNAIVVML-----KREEQAL 835
Query: 359 YLLQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSE 418
+++ +S+ + N +
Sbjct: 836 PNIKQFYVQCACRDSKYAAIV-------------------------------NLYSGLAV 864
Query: 419 KATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVA 478
++++F T+ V ++ + ++ G+ V ++G + R + +F+ G +L+ T+V
Sbjct: 865 ASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVF 924
Query: 479 ARGVDIPLLANVINYSLP-----------------GSSKIFIHRVGRTARAGNRGWAFSI 521
ARG+D+ ++ VINY LP + ++HR+GRT R G G A ++
Sbjct: 925 ARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINL 984
Query: 522 V 522
+
Sbjct: 985 I 985
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 95.9 bits (237), Expect = 3e-19
Identities = 85/389 (21%), Positives = 169/389 (42%), Gaps = 56/389 (14%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF G + +L + +G+ PTPIQ +T + + ++IV ++ G+GKT ++LP I
Sbjct: 33 SFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIM 92
Query: 187 KLKTHSA----KIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGM 242
K+ K G +IL RE A+ R ++ +LR+ L G +
Sbjct: 93 KMHNQRGLMQHKKGPIVLILVDCREAAVMVQREVLYYTNPLELRTHCLLGNSQWQGH--- 149
Query: 243 MMGNPDVVIATPGRFLHL--KVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT 300
D+++A+ GR L + + ++L+ Y+V D DR+ ++G + + LL
Sbjct: 150 --AECDLLVASAGRLLQMIDNKKHVVELERCTYLVLDNIDRMIDVGLEGNICRLLCRLRP 207
Query: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYL 360
+ Q ++ S + S+L A L +R+ I L+ +I++ N L
Sbjct: 208 HAQLIVSSTSWSSNLKRMANKFLGQYTAIRVGEINNIGVRLQ----NIRQRVEVVNGL-- 261
Query: 361 LQEAIKMPVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKA 420
S++++L ++ + + +++P +
Sbjct: 262 ------------SKVERLMKE------------------------LTAIYDTSDIPGK-- 283
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
+++V + VE + L++NC I+G + +++F G +I+V T + +
Sbjct: 284 VVIYVKRQKVVEELVDLIRNC-VPCEGIHGGRTAQENQGIIHDFGTGAYNIIVATQMTSN 342
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRT 509
+D+P + VINY P + ++ R+ RT
Sbjct: 343 CLDVPGIRYVINYDFPDNIDKYVQRMSRT 371
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 95.1 bits (235), Expect = 5e-19
Identities = 61/196 (31%), Positives = 107/196 (54%), Gaps = 6/196 (3%)
Query: 123 HKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVL 182
H G F F L +L I GF P+ +Q + IP + D++ A++G GKTA FVL
Sbjct: 42 HSSG-FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL 100
Query: 183 PMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSK-GSDLRSILLTGGDSLEDQFG 241
+++++ + ++ V +++ +RELA Q + ++ FSK ++ + GG S++
Sbjct: 101 ATLQQIEPVNGQVTV--LVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEE 158
Query: 242 MMMGN-PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFP 299
++ N P VV+ TPGR L L + LK+V++ V DE D++ E + + + E+ P
Sbjct: 159 VLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTP 218
Query: 300 TNRQTLLFSATLPSSL 315
+Q ++FSATL +
Sbjct: 219 HEKQCMMFSATLSKDI 234
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 94.0 bits (232), Expect = 1e-18
Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 25/244 (10%)
Query: 93 ELSDDEKKATNESDDDL----NDYFNTTADAAAKHKKGSF--ASFG-LSKLVLIN----I 141
E ++ K E++++L N+ N + G+F SF LS LV N I
Sbjct: 325 ESKEESAKTPKETENNLEKPDNEEDNREVPSLRLRLTGAFDDTSFASLSNLVNENTLKAI 384
Query: 142 SKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLK-THSAKIGVRAV 200
+ F T IQ KTI +L+ RD++ A+TGS + + KLK + + GV
Sbjct: 385 KEMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGS-------VELTVKLKFMPTNRPGV--F 435
Query: 201 ILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-H 259
ILSP+RELA+Q +F + L+ GGD+ + + ++++ATPG L +
Sbjct: 436 ILSPTRELAMQ---IFGGANTHHMHTYGLIMGGDNTSAEAQKLANGINIIVATPGHLLDY 492
Query: 260 LKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFA 319
++ K+++Y+V DEADR+ ++GF+E+L +++ PT R T+L SAT + D A
Sbjct: 493 MQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIKLLPTCRHTMLLSATQTRKVEDLA 552
Query: 320 KAGL 323
+ L
Sbjct: 553 RISL 556
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 92.8 bits (229), Expect = 2e-18
Identities = 81/336 (24%), Positives = 145/336 (43%), Gaps = 22/336 (6%)
Query: 200 VILSPSRELAIQTHRVFKEFSKGSD---LRSILLTGGDSLEDQFGMMMGNPDVVIATPGR 256
VIL P+REL QT + + F+ D +R + L G+++ + D+V+ TP R
Sbjct: 309 VILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAGENMNQILRTLETGCDIVVGTPSR 368
Query: 257 FLHLKVEMNLDLKSVEYVVFDEADRLF--EMGFQEQLNELLVAFP------TNRQTLLFS 308
L L K++++VV DE D+ + Q+ + P T RQ + S
Sbjct: 369 VFDLIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDGTRRQVIACS 428
Query: 309 ATLPS-SLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAIKM 367
ATL + + FA +S P + L +S ++ + + E + + + Q+
Sbjct: 429 ATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQMHQQV--- 485
Query: 368 PVATESQIKKLKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPT 427
+ + + R +A +M +KA IVF T
Sbjct: 486 ----HLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQM--DKA-IVFCRT 538
Query: 428 RHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLL 487
+ +++ L+ + ++G + R+ L F+ G+ LV +DV ARG+D+ +
Sbjct: 539 KQQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVARGLDVQGV 598
Query: 488 ANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVS 523
VI+ +LP +++HR+GR RA G + S+VS
Sbjct: 599 PFVISVTLPDEKSMYVHRIGRVGRAERMGLSISLVS 634
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 92.4 bits (228), Expect = 3e-18
Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 15/240 (6%)
Query: 89 FPSLELSD-DEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFR 147
+P L+++ E + +S D++ + D+ K+ F +S L L +S G
Sbjct: 292 YPPLDINTVREDLSKRKSVDNVMEEKQEPHDSIYSAKR--FDESCISPLTLKALSASGIL 349
Query: 148 QPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK-LKTHSAKIGVR------AV 200
+ T +Q T+ L +D + A+TG+GK+ AF+LP IE LK ++ GV A+
Sbjct: 350 KMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFAL 409
Query: 201 ILSPSRELAIQTHRVFKEFSKGSDLRSI-LLTGGDSLE-DQFGMMMGNPDVVIATPGRFL 258
IL P+RELA Q K K D + L GG + DQ + ++IATPGR L
Sbjct: 410 ILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLL 469
Query: 259 -HLKVEMNLD--LKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSL 315
H++ + L L +++ + DEAD L ++GF+ + +++ P RQ+LLFSAT+P +
Sbjct: 470 DHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEV 529
Score = 53.1 bits (126), Expect = 2e-06
Identities = 38/134 (28%), Positives = 59/134 (43%), Gaps = 29/134 (21%)
Query: 419 KATIVFVPTRHHVEYVTQLLK---------------NCGYLVSYIYGALNQ--------H 455
+ + + P H V LLK + G + S +Y L + H
Sbjct: 559 RQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIH 618
Query: 456 ARKQQLYN------FRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRT 509
ARK QL+ F+ ILV +DV+ARG++ P + VI +P + +IHR+GRT
Sbjct: 619 ARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRT 678
Query: 510 ARAGNRGWAFSIVS 523
R G G +++
Sbjct: 679 GREGKGGEGLLLIA 692
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 92.0 bits (227), Expect = 4e-18
Identities = 77/240 (32%), Positives = 123/240 (51%), Gaps = 15/240 (6%)
Query: 89 FPSLELSD-DEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFR 147
+P L+++ E + +S D++ + D+ K+ F +S L L +S G
Sbjct: 339 YPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKR--FDESCISPLTLKALSASGIV 396
Query: 148 QPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK-LKTHSAKIGVRAV------ 200
+ T +Q T+ L +D + A+TG+GK+ AF+LP IE LK ++ GV V
Sbjct: 397 KMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVL 456
Query: 201 ILSPSRELAIQTHRVFKEFSKGSDLRSI-LLTGGDSLE-DQFGMMMGNPDVVIATPGRFL 258
IL P+RELA Q K K D + L GG DQ + ++IATPGR L
Sbjct: 457 ILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLL 516
Query: 259 -HLKVEMNLD--LKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSL 315
H++ + L L +++ + DEAD L ++GF+ + +++ P RQ+LLFSAT+P +
Sbjct: 517 DHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEV 576
Score = 54.3 bits (129), Expect = 9e-07
Identities = 39/134 (29%), Positives = 59/134 (43%), Gaps = 29/134 (21%)
Query: 419 KATIVFVPTRHHVEYVTQLLK---------------NCGYLVSYIYGALNQ--------H 455
K + + P H V LLK + G + S +Y L + H
Sbjct: 606 KQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIH 665
Query: 456 ARKQQLYN------FRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRT 509
ARK QL+ F+ ILV +DV+ARG++ P + VI +P + +IHR+GRT
Sbjct: 666 ARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRT 725
Query: 510 ARAGNRGWAFSIVS 523
R G G +++
Sbjct: 726 GREGKGGKGLLLIA 739
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 90.5 bits (223), Expect = 1e-17
Identities = 63/218 (28%), Positives = 119/218 (53%), Gaps = 12/218 (5%)
Query: 145 GFRQPTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVIL 202
GF +P+ IQ +P++L ++++ +++G+GKTAAFVL M+ ++ ++ ++ + + L
Sbjct: 2 GFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRV--NALELFPQCLCL 59
Query: 203 SPSRELAIQTHRVFKEFSKGS-DLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLK 261
+P+ ELA+QT RV ++ K D++ + G+ + + ++I TPG L
Sbjct: 60 APTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDI---TKQIIIGTPGTVLDWC 116
Query: 262 VEMNL-DLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFA 319
++ L DL + V DEAD + + GF + + A P+ Q LLFSAT S+ FA
Sbjct: 117 FKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFA 176
Query: 320 KAGLSNPVLVRLDAETKISENLEMLFI--SIKKDEREA 355
+ + +P +++L E N+ ++ +KD+ +A
Sbjct: 177 ERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQA 214
Score = 69.3 bits (168), Expect = 3e-11
Identities = 35/107 (32%), Positives = 59/107 (54%), Gaps = 6/107 (5%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
I+F TR + +++T + G+ VS + G L R FR G +L+ T+V ARG
Sbjct: 228 IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARG 287
Query: 482 VDIPLLANVINYSLPGSS------KIFIHRVGRTARAGNRGWAFSIV 522
+D+ + V+N+ LP + ++HR+GRT R G +G AF+++
Sbjct: 288 IDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 334
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 90.5 bits (223), Expect = 1e-17
Identities = 63/218 (28%), Positives = 119/218 (53%), Gaps = 12/218 (5%)
Query: 145 GFRQPTPIQRKTIPLILQK--RDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVIL 202
GF +P+ IQ +P++L ++++ +++G+GKTAAFVL M+ ++ ++ ++ + + L
Sbjct: 2 GFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRV--NALELFPQCLCL 59
Query: 203 SPSRELAIQTHRVFKEFSKGS-DLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLK 261
+P+ ELA+QT RV ++ K D++ + G+ + + ++I TPG L
Sbjct: 60 APTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDI---TKQIIIGTPGTVLDWC 116
Query: 262 VEMNL-DLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFA 319
++ L DL + V DEAD + + GF + + A P+ Q LLFSAT S+ FA
Sbjct: 117 FKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFA 176
Query: 320 KAGLSNPVLVRLDAETKISENLEMLFI--SIKKDEREA 355
+ + +P +++L E N+ ++ +KD+ +A
Sbjct: 177 ERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQA 214
Score = 70.5 bits (171), Expect = 1e-11
Identities = 35/107 (32%), Positives = 60/107 (55%), Gaps = 6/107 (5%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
I+F TR + +++T + G+ VS + G L R + FR G +L+ T+V ARG
Sbjct: 228 IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 287
Query: 482 VDIPLLANVINYSLPGSS------KIFIHRVGRTARAGNRGWAFSIV 522
+D+ + V+N+ LP + ++HR+GRT R G +G AF+++
Sbjct: 288 IDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 334
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 90.5 bits (223), Expect = 1e-17
Identities = 77/285 (27%), Positives = 134/285 (47%), Gaps = 20/285 (7%)
Query: 96 DDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLI----NISKKGFRQPTP 151
DD+ ++DD D+ + K + ASF K++ N+ + +PTP
Sbjct: 665 DDKMFEDAVNNDDKIDFDQKVVASTGKVEIPDMASFDGFKVLPQDLHDNLKRMKMNRPTP 724
Query: 152 IQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTH--------SAKIGVRAVILS 203
IQR + I+ D+V A TGSGKT AF++P + KL K R +I++
Sbjct: 725 IQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVA 784
Query: 204 PSRELAIQTHRVFKEFSKGSDLRSILLTGGDS--LEDQFGMMMGNPDVVIATPGRFLHLK 261
P+REL QT ++ + + L+ L GG S Q ++++AT GR
Sbjct: 785 PTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFV 844
Query: 262 VEMNLDLKSVEYVVFDEADRLFE-MGFQEQLNELLVAFPTNR--QTLLFSATLPSSLV-- 316
+ L ++Y+V DEADR+ + + F E++++ ++ P R QT+LFSA+ L
Sbjct: 845 NAGEVSLSKMKYIVLDEADRMVDSIDFGEEVSK-IIGSPGERTQQTVLFSASFSEDLQSD 903
Query: 317 DFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLL 361
D K ++++D +E ++ + + + E+ + LL
Sbjct: 904 DLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTEKRDAIYKLL 948
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 89.7 bits (221), Expect = 2e-17
Identities = 72/208 (34%), Positives = 109/208 (51%), Gaps = 24/208 (11%)
Query: 149 PTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSREL 208
PT +QR IP IL + ++ TGSGKT ++VLP I L++ R +++ P+REL
Sbjct: 79 PTDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLLESGDK----RLLVIVPTREL 134
Query: 209 AIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDL 268
Q +VF++FS+G LR + +TG S+E Q + DV I+TPGR L L+L
Sbjct: 135 VSQVGQVFRKFSEGL-LRIVEITGEVSIESQRLQVSRPFDVAISTPGRLREL-----LEL 188
Query: 269 KSV---EYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSN 325
KS+ EYVV DEADRL + + + +L + FSAT F +G
Sbjct: 189 KSIGGFEYVVVDEADRLMQHDIRSDVTFILERMKPEVAS-FFSAT------PFEWSG-GT 240
Query: 326 PVLVRLDAETKISENLEMLFISIKKDER 353
+LV + ++E F+ ++K E+
Sbjct: 241 RILV---GNVSVGRDVEEFFMYVEKKEK 265
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 89.7 bits (221), Expect = 2e-17
Identities = 61/219 (27%), Positives = 109/219 (48%), Gaps = 14/219 (6%)
Query: 165 DIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSD 224
D++ A++G+GKT F + +E L + S+ I + VI++P+RE+++Q ++ +
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSRSSHI--QKVIVTPTREISVQIKETVRKVAPTGA 108
Query: 225 LRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE 284
S+ + G + + P +VI TPGR L +++ V++ V DEAD+L +
Sbjct: 109 RTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMD 168
Query: 285 MGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAE---------- 334
F++ +N ++ + P RQ +FSAT P +L + L + LVR +A+
Sbjct: 169 EVFRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGIKQY 228
Query: 335 --TKISENLEMLFISIKKDEREANLLYLLQEAIKMPVAT 371
K S LE L +K L++ Q + P+AT
Sbjct: 229 VVAKCSPMLEKLTHVLKSIRYVQALVFCDQISKCEPIAT 267
Score = 56.2 bits (134), Expect = 2e-07
Identities = 33/118 (27%), Positives = 55/118 (45%)
Query: 422 IVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARG 481
+VF E + LK+ G V+++ A++Q R+ + RA ILV +D+ ARG
Sbjct: 253 LVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQKDRQLAVDQLRAKRVKILVSSDLTARG 312
Query: 482 VDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSXXXXXXXXXXXXXXGK 539
+D + V+N + + + HR+GR AR G G A +++ GK
Sbjct: 313 IDADNVNLVVNIDAAANEETYFHRIGRAARFGAHGAAVTLLEDERALKGFTALAYRGK 370
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 87.4 bits (215), Expect = 1e-16
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 13/225 (5%)
Query: 146 FRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPS 205
F+ TPIQ + Q +I G+A TG+GKT AF+LP++ ++ + V +IL+PS
Sbjct: 15 FKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRIDPKVKQTQV--LILAPS 72
Query: 206 RELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGN-PDVVIATPGRFLHLKVEM 264
+ELA+QT V +E+ D+ L GG + Q + + P +V+ T GR L +
Sbjct: 73 QELAMQTTAVAREWGALVDVSVTSLIGGANGRRQADKLKKDKPHIVVGTLGRVLTMLDGG 132
Query: 265 NLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAK--AG 322
L L ++ V+FDEAD + ++ L L PT+ Q LFSAT L A
Sbjct: 133 ALKLNGLQTVIFDEADAMLSDERRDSLQALAAQLPTDVQLGLFSATSGVDLKYVADTFGQ 192
Query: 323 LSNPVLVRLDAETKISENLE--------MLFISIKKDEREANLLY 359
PV V DA I+ + L I + +++++A + +
Sbjct: 193 EVRPVSVGTDAPAAITHEFQYVDQKAKASLLIQLARNKQQALVFF 237
Score = 58.9 bits (141), Expect = 4e-08
Identities = 32/63 (50%), Positives = 38/63 (59%)
Query: 454 QHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAG 513
Q R L F+ G S+L+VTDVAARG+DI L V+N LP K +IHR GRT R G
Sbjct: 267 QVQRADALRLFKKGEVSLLLVTDVAARGLDIEDLPLVVNAQLPQRKKTYIHRAGRTGRMG 326
Query: 514 NRG 516
G
Sbjct: 327 KPG 329
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 85.1 bits (209), Expect = 5e-16
Identities = 93/374 (24%), Positives = 159/374 (41%), Gaps = 61/374 (16%)
Query: 152 IQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQ 211
+ T+PL L++ GSGKT ++L + + + V+AVI+ P+REL +Q
Sbjct: 66 VTETTVPLTLRQ------ICQGSGKTLTYLLLIFSLINPQRSS--VQAVIVVPTRELGMQ 117
Query: 212 THRVFKEFSKGSDLR------SILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMN 265
+V + + S++ LL GG + + P +++AT H+ +
Sbjct: 118 VTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHI 177
Query: 266 LDLKSVEYVVFDEADRLFEMGFQ-EQLNELLVAFPT--NRQTLLFSATLPSS---LVDFA 319
+ SV +V DE D LF Q + +LL +F + RQT+ SA++P + D
Sbjct: 178 FRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCI 237
Query: 320 KAGLSNPVLVRLDAETKISENLEML--FISIKKDEREANLLYLLQEAIKMPVATESQIKK 377
+ + +V + + L +L F+ +K + LL LL+ A ES I
Sbjct: 238 QQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESD-----APESAIIF 292
Query: 378 LKQQNXXXXXXXXXXXXXXXXXXXXXXXXRRLPNANEMPSEKATIVFVPTRHHVEYVTQL 437
+ +Q+ + A PS + F+ T + L
Sbjct: 293 VGEQS------------------------EKSKKAGNDPSTTLLMEFLKTSYKGSLEILL 328
Query: 438 LKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPG 497
L+ G +N ++R L R G +LV TD+AARG+D+P ++ N+ LP
Sbjct: 329 LE----------GDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQ 378
Query: 498 SSKIFIHRVGRTAR 511
+ ++HR GR R
Sbjct: 379 TVTDYLHRAGRAGR 392
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 83.6 bits (205), Expect = 1e-15
Identities = 46/100 (46%), Positives = 58/100 (58%)
Query: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
T+VFV T+ + L Y V I+G L Q R++ L FR G ILV T VAAR
Sbjct: 115 TLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAAR 174
Query: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFS 520
G+DIP + +VINY LP ++HR+GRT R GN G A S
Sbjct: 175 GLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATS 214
Score = 50.8 bits (120), Expect = 1e-05
Identities = 30/101 (29%), Positives = 55/101 (53%), Gaps = 5/101 (4%)
Query: 266 LDLKSVEYVVFDEADRLFEMGFQEQLNELL----VAFPTNRQTLLFSATLPSSLVDFAKA 321
+ ++ Y+V DEADR+ +MGF+ Q+ +++ + R T +FSAT P + A+
Sbjct: 6 IGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQD 65
Query: 322 GL-SNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLL 361
L N V + + SEN+ + +++DE+ + L+ LL
Sbjct: 66 FLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLL 106
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 77.8 bits (190), Expect = 8e-14
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 418 EKATIVFVPTRHHVEYVTQLLKNCGY-LVSYIYGALNQHARKQQLYNFRAGLTSILVVTD 476
E ++IVFV + + + L GY V+ ++G ++QH R + +F+ G+ +LV T
Sbjct: 250 EGSSIVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIADFKTGVIKVLVATS 309
Query: 477 VAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNR 515
VAARG+D+ L V+NY P + ++HRVGRT RAG +
Sbjct: 310 VAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRK 348
Score = 69.7 bits (169), Expect = 2e-11
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 17/204 (8%)
Query: 196 GVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPG 255
G AVIL+P+RELA+QT++ +F+K L+ GG + +Q + ++V+ TPG
Sbjct: 116 GPIAVILTPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPG 175
Query: 256 RFLHLKVEMN---LDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLP 312
R + + + +L+ V Y+V DEADR+F GF+ Q+ V Q + A
Sbjct: 176 RMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKGFEPQVGGKSVVCSDITQNAVICAEHQ 235
Query: 313 SSLVDFAKAGL---SNPVLVRLDAETKISENLEMLFIS-----------IKKDEREANLL 358
L G+ +V +D + K + ++ L + I + +R++++
Sbjct: 236 KFLKLLELLGMYYDEGSSIVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIA 295
Query: 359 YLLQEAIKMPVATESQIKKLKQQN 382
IK+ VAT + L +N
Sbjct: 296 DFKTGVIKVLVATSVAARGLDVKN 319
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 75.1 bits (183), Expect = 5e-13
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 450 GALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRT 509
G LNQ R ++L FR G +LV +D RG+D+ + NVINY +P +K FIHR GRT
Sbjct: 322 GGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRT 381
Query: 510 ARAGNRGWAFSIVS 523
ARAG G F+++S
Sbjct: 382 ARAGQAGRCFTLLS 395
Score = 69.3 bits (168), Expect = 3e-11
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 25/176 (14%)
Query: 163 KRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKG 222
+RDI + TGSGKT ++ LP+++ L + + +RA+++ P+R+LA+Q VF +
Sbjct: 24 ERDICVNSPTGSGKTLSYALPIVQLLASRPVRC-LRALVVLPTRDLALQVKDVFDAIAPA 82
Query: 223 SDLRSILLTGGDSLEDQFGMMMGNP---------------------DVVIATPGRFL-HL 260
L G S+ + ++ P D+++ATPGR + H+
Sbjct: 83 VGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHI 142
Query: 261 KVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL--FSATLPSS 314
L+ + Y+V DE DRL +Q L +L T+ +L F+ +PS+
Sbjct: 143 NNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSA 198
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 73.6 bits (179), Expect = 1e-12
Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 40/252 (15%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
S+ S GLS V I + GF +P+ Q IP IL +D++ A TGSGKT ++ P+I+
Sbjct: 81 SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID 140
Query: 187 KLKTHSAKIGVR------------AVILSPSRELAIQTHRVFK---EFSKGSDLRSILLT 231
+L + V ++IL P+ L Q R+ + LR +
Sbjct: 141 QLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVC 200
Query: 232 GGDSLEDQFGMMMGNPDVVIATPGRFLH---LKVEMNLD-LKSVEYVVFDEADRLFEMGF 287
G D+ PD++++TP L+ K L+ L+ V+YVVFDEAD L F
Sbjct: 201 GSQGWPDRL------PDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSF 254
Query: 288 QEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLV-----RLDAETKISENLE 342
Q Q+ L+ L F S L AK+ L P+ + ++D E + +
Sbjct: 255 QNQIIRLI-------NMLRFDEKQVSRL---AKSNLGRPMEIDASVPQIDLENEDDAEFD 304
Query: 343 MLFISIKKDERE 354
IS ++DE E
Sbjct: 305 EGSISEEEDEEE 316
Score = 59.3 bits (142), Expect = 3e-08
Identities = 38/109 (34%), Positives = 54/109 (48%), Gaps = 1/109 (0%)
Query: 413 NEMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSIL 472
N + + T+VF T VE V +L+ + R L +FR +
Sbjct: 419 NNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE-TGGVF 477
Query: 473 VVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSI 521
V TD AARGVD+P +++VI S+ F+HR+GRTARAG G S+
Sbjct: 478 VCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSL 526
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 73.2 bits (178), Expect = 2e-12
Identities = 51/212 (24%), Positives = 106/212 (49%), Gaps = 18/212 (8%)
Query: 92 LELSDDEKKATNESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTP 151
L+ S + ++ N NT A HK+ +L+ I + G+++P+P
Sbjct: 25 LKPSGGPRGEATQTQQQTNQLKNTNTIIALNHKRR----------LLMRIFEMGWKKPSP 74
Query: 152 IQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQ 211
Q ++IP+ L RDI+ A+ G+GK++A +P++++L K ++ +++ P+ A+Q
Sbjct: 75 FQEESIPIALSGRDILARAKNGTGKSSAHDIPLLKRLDL--KKDTIQTIVIVPTGGPALQ 132
Query: 212 THRVFKEFSKG-SDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLDLKS 270
++ + SK ++ ++ TGG + D + +VIA PGR L+L ++ +
Sbjct: 133 VSQICIQVSKHMGGVKVVMTTGGTNSGDDVLRLDDTVHMVIAAPGRILNL-IKKGVAKDI 191
Query: 271 VEYVVF----DEADRLFEMGFQEQLNELLVAF 298
+Y + + L + + QLN++++ F
Sbjct: 192 TQYYAYVTEHQKVHGLTTLFSRLQLNQMIIFF 223
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 70.1 bits (170), Expect = 2e-11
Identities = 55/245 (22%), Positives = 113/245 (45%), Gaps = 14/245 (5%)
Query: 127 SFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIE 186
SF L + +L I G +P+ IQ++ I ++ ++ A++G+GK A F + ++
Sbjct: 78 SFDDMNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGKMATFSISIL- 136
Query: 187 KLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFG-MMMG 245
H ++ V+A + IQ +V D GG ++ + + M
Sbjct: 137 ----HQIELDVKAT------QALIQ--KVVIALGDHMDASCHTCIGGTNVHAEVQKLQME 184
Query: 246 NPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTL 305
P +++ TPG + L K ++ V D+ D + GF++Q+ + +N Q +
Sbjct: 185 APHIIVGTPGHVFDMLNWRYLSPKYIKMFVLDKTDEMLSHGFKDQIYGIFQELNSNTQVV 244
Query: 306 LFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLLQEAI 365
L SAT+PS +++ K + + + + E E + +I+++++E + + L L E +
Sbjct: 245 LPSATMPSDVLEVTKKFMREHIWILVKKEELTLEGICQFYINMEREEWKLDTLGDLYETL 304
Query: 366 KMPVA 370
+ A
Sbjct: 305 TIAQA 309
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 67.8 bits (164), Expect = 8e-11
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 149 PTPIQRKTIPLILQ-----KRDIVGMA-RTGSGKTAAFVLPMIEKLK-----------TH 191
P+PIQ I I + K I +A TGSGKT A+++P+I+ LK T
Sbjct: 137 PSPIQTVAIKRISKNLMDPKLQIHAIAAETGSGKTMAYLIPLIDYLKRQELETPELWETL 196
Query: 192 SAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVI 251
+ +R++IL P+ EL Q + + L S S D + D+++
Sbjct: 197 RKNVLIRSIILVPTHELVDQVYETVSKTKTLLGLNSFKWDKATSYRDLLENIKNRIDILV 256
Query: 252 ATPGRFLHL-KVEM----NLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLL 306
TPG+ L+L + M + L V +VV DEAD L + + E+ + + P +
Sbjct: 257 TTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRSWLEETHSAIKRIPNINHLIF 316
Query: 307 FSATLP 312
SAT+P
Sbjct: 317 CSATIP 322
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 64.3 bits (155), Expect = 9e-10
Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 232 GGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQ 290
GG + + + ++++AT GR L H++ K+++ +V DEADR+ ++GF+E+
Sbjct: 2 GGSNRSAEAWKLANGINIIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 61
Query: 291 LNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENL 341
L +++ T+RQT+LFSAT + D A+ L L D + +E +
Sbjct: 62 LKQIIKLLLTHRQTMLFSATQTQKVEDLARISLKKEPLYVGDDDDNANETV 112
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 62.8 bits (151), Expect = 3e-09
Identities = 28/81 (34%), Positives = 53/81 (64%)
Query: 443 YLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIF 502
+ VS ++G ++Q R + +R+G + +L+ TD+ RG+D+ L+ VINY P + + +
Sbjct: 154 FTVSAMHGDMDQKERDVVMREYRSGSSRVLITTDLLPRGIDVQQLSLVINYDPPTNRENY 213
Query: 503 IHRVGRTARAGNRGWAFSIVS 523
IHR+GR + G++G A ++V+
Sbjct: 214 IHRIGRGGQFGHKGVAINMVA 234
Score = 55.1 bits (131), Expect = 5e-07
Identities = 28/117 (23%), Positives = 61/117 (51%)
Query: 242 MMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTN 301
+ M P +++ TPGR + L K ++ V DEAD + F++Q+ ++ +N
Sbjct: 55 LQMEAPHIIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLSHRFKDQICDIFQMLNSN 114
Query: 302 RQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLL 358
Q +L SAT+PS +++ K + +P+ + + E ++ + + D++E +++
Sbjct: 115 TQVVLLSATIPSDVLEVTKKFMRDPIRILVKKEELTLKDFTVSAMHGDMDQKERDVV 171
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 62.0 bits (149), Expect = 4e-09
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 221 KGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFL-HLKVEMNLDLKSVEYVVFDEA 279
K D + L+ GG L+ + + N ++++ PGR L H+ ++ ++ +V DEA
Sbjct: 107 KNHDFSAGLIIGGKYLKHE-AERINNINILVCAPGRLLQHMDETVSFHATALLMLVLDEA 165
Query: 280 DRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAKAGLSN 325
R+ ++GF + +N ++ P RQTLLFSAT S+ D A+ L N
Sbjct: 166 YRILDVGFADTMNAIIENLPKKRQTLLFSATQTISVKDLARLSLKN 211
Score = 52.0 bits (123), Expect = 4e-06
Identities = 36/111 (32%), Positives = 59/111 (52%), Gaps = 11/111 (9%)
Query: 415 MPSEKATIVFVPTRH-HVEYVTQL-LKNCGYLVSYIYGALNQHARKQQLYN-FRAGLTSI 471
+P ++ T++F T+ V+ + +L LKN Y+ Q R+ ++YN F ++
Sbjct: 184 LPKKRQTLLFSATQTISVKDLARLSLKNTEYVW--------QQMRRMEVYNEFVRKRAAV 235
Query: 472 LVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIV 522
L +DVAARG+D P + + + P + +IHR GRTAR G A I+
Sbjct: 236 LFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGRTARYKEDGEALLIL 286
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 61.2 bits (147), Expect = 7e-09
Identities = 34/98 (34%), Positives = 57/98 (57%), Gaps = 14/98 (14%)
Query: 128 FASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEK 187
F+ L + + NI G+ +PTP+Q+ +IP + RD++ A+TGSGKTAAF++P++
Sbjct: 365 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNA 424
Query: 188 L------KTHSA--------KIGVRAVILSPSRELAIQ 211
+ H + K A++LSP+REL++Q
Sbjct: 425 ILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQ 462
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 56.2 bits (134), Expect = 2e-07
Identities = 37/162 (22%), Positives = 77/162 (46%), Gaps = 4/162 (2%)
Query: 204 PSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVE 263
P +E + + ++FS + ++ G + Q ++ +++ATPG + L
Sbjct: 196 PQQENWLYRYEEVRKFSYQPRVHPCVVYGDADIGQQIQVLEHGCHLLVATPGGLVDLMER 255
Query: 264 MNLDLKSVEYVVFDEADRLFEMGFQEQLNELL----VAFPTNRQTLLFSATLPSSLVDFA 319
+ L +Y+V DEADR+ +MGF Q++ +L + ++FSAT P+ + A
Sbjct: 256 GKIGLDFCKYLVLDEADRMLDMGFGPQIHLILEQDTMPLKGIHHIMMFSATFPNEIQMLA 315
Query: 320 KAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYLL 361
+ L + + + SE + + +++ ++ + LL LL
Sbjct: 316 RDFLDEYIFLAVGRVGSTSETITQEVVWVEEPDKRSFLLDLL 357
>Hs17436931 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 197
Score = 55.8 bits (133), Expect = 3e-07
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 255 GRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPS 313
GR L H++ K+++ +V DEADR+ ++GF+E+L +++ T+RQT+LFSAT
Sbjct: 32 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLLTHRQTMLFSATQTQ 91
Query: 314 SLVDFAKAGLSNPVLVRLDAETKISENL 341
+ D A+ L L D + +E +
Sbjct: 92 KVEDLARISLKKEPLYVGDDDDNANETV 119
>At2g28600 [A] KOG0339 ATP-dependent RNA helicase
Length = 502
Score = 53.1 bits (126), Expect = 2e-06
Identities = 34/127 (26%), Positives = 61/127 (47%), Gaps = 2/127 (1%)
Query: 202 LSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQF-GMMMGNPDVVIATPGRFLHL 260
L PS+ A Q V K KG + ++ L G L+ Q G+ P+ ++ATP R L +
Sbjct: 202 LVPSQSKASQVRSVCKAL-KGIGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLLEI 260
Query: 261 KVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAK 320
+D+ +V +V DE L G+ + + A + QT++F+ + +S++ +
Sbjct: 261 VTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASIIPAVQ 320
Query: 321 AGLSNPV 327
+ L V
Sbjct: 321 SFLGGSV 327
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 52.8 bits (125), Expect = 3e-06
Identities = 45/162 (27%), Positives = 77/162 (46%), Gaps = 27/162 (16%)
Query: 142 SKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVI 201
+K F P Q+ IP L+K +++ A TGSGKT ++ LP++E + S + I
Sbjct: 41 TKVPFDSPLLTQKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPLVEMARGRS----LFGAI 96
Query: 202 LSPSRELAIQTHRVFKEFSK---------GSDLRSILLTGGD-------SLEDQF----- 240
L P + L Q +RV +E G L+ G+ +++D+
Sbjct: 97 LVPGKPLVRQVYRVVREIKHEGLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIA 156
Query: 241 GMMMGNPDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRL 282
+ + V+I TP L L + M+ ++++V ++V DEAD L
Sbjct: 157 ESLRASARVLIGTPRSVLGL-MSMS-EIRNVTHLVIDEADLL 196
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,619,929
Number of Sequences: 60738
Number of extensions: 2149168
Number of successful extensions: 7740
Number of sequences better than 1.0e-05: 237
Number of HSP's better than 0.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 6742
Number of HSP's gapped (non-prelim): 534
length of query: 973
length of database: 30,389,216
effective HSP length: 116
effective length of query: 857
effective length of database: 23,343,608
effective search space: 20005472056
effective search space used: 20005472056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)