ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6688 good K KOG3334 Transcription Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI6688 2328208 2327813 -132 
         (132 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YMR236w [K] KOG3334 Transcription initiation factor TFIID subuni...   188   2e-48
SPAC12G12.05c [K] KOG3334 Transcription initiation factor TFIID ...   122   1e-28
Hs4507351 [K] KOG3334 Transcription initiation factor TFIID subu...    82   1e-16
At1g54140 [K] KOG3334 Transcription initiation factor TFIID subu...    82   1e-16
Hs20070280 [K] KOG3334 Transcription initiation factor TFIID sub...    82   2e-16
7293389 [K] KOG3334 Transcription initiation factor TFIID subuni...    69   1e-12
ECU01g1330 [K] KOG3334 Transcription initiation factor TFIID sub...    65   3e-11

>YMR236w [K] KOG3334 Transcription initiation factor TFIID subunit TAF9
           (also component of histone acetyltransferase SAGA)
          Length = 157

 Score =  188 bits (477), Expect = 2e-48
 Identities = 91/131 (69%), Positives = 105/131 (79%), Gaps = 3/131 (2%)

Query: 5   DKDTLDTPRDVRXXXXXXASQSVLQYEDKVPLQLMDFAHRYTKGVLKDAIAYREYVGG-- 62
           D    +TPRDVR      ASQS+ QYED+VPLQLMDFAHRYT+GVLKDA+ Y +Y G   
Sbjct: 23  DSTQEETPRDVRLLHLLLASQSIHQYEDQVPLQLMDFAHRYTQGVLKDALVYNDYAGSGN 82

Query: 63  -SASDVSIEDIRLAIGARTQYQFKPTAPKELMLQLAAERNKKPLPNVVSSWGVRLPPEKY 121
            + S + +EDIRLAI ARTQYQFKPTAPKELMLQLAAERNKK LP V+ +WGVRLPPEKY
Sbjct: 83  SAGSGLGVEDIRLAIAARTQYQFKPTAPKELMLQLAAERNKKALPQVMGTWGVRLPPEKY 142

Query: 122 CLTAKEWSIDE 132
           CLTAKEW +++
Sbjct: 143 CLTAKEWDLED 153


>SPAC12G12.05c [K] KOG3334 Transcription initiation factor TFIID subunit TAF9
           (also component of histone acetyltransferase SAGA)
          Length = 163

 Score =  122 bits (306), Expect = 1e-28
 Identities = 55/124 (44%), Positives = 81/124 (64%)

Query: 7   DTLDTPRDVRXXXXXXASQSVLQYEDKVPLQLMDFAHRYTKGVLKDAIAYREYVGGSASD 66
           +++  P+DVR      +S  V  Y   VPLQL+ FAHRYT+ +++D+  Y E+  G  + 
Sbjct: 9   ESIKGPKDVRLIHLILSSLGVPSYSQTVPLQLLTFAHRYTQQLIQDSQVYAEHSRGQNAP 68

Query: 67  VSIEDIRLAIGARTQYQFKPTAPKELMLQLAAERNKKPLPNVVSSWGVRLPPEKYCLTAK 126
           +S+ED+RLA+ ++  + F    PKE +L+LA ERN+KPLP +  S+G RLPPEKYCLT  
Sbjct: 69  ISVEDVRLAVASQINHSFTGPPPKEFLLELAMERNRKPLPQIQPSYGFRLPPEKYCLTQP 128

Query: 127 EWSI 130
            W +
Sbjct: 129 NWIV 132


>Hs4507351 [K] KOG3334 Transcription initiation factor TFIID subunit TAF9
           (also component of histone acetyltransferase SAGA)
          Length = 264

 Score = 82.4 bits (202), Expect = 1e-16
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 12  PRDVRXXXXXXASQSVLQYEDKVPLQLMDFAHRYTKGVLKDAIAYREYVGGSASDVSIED 71
           P+D +          + +YE +V  Q+++FA RY   +L DA  Y  +     + V  +D
Sbjct: 13  PKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHA--KKATVDADD 70

Query: 72  IRLAIGARTQYQFKPTAPKELMLQLAAERNKKPLPNVVSSWGVRLPPEKYCLTAKEWSI 130
           +RLAI  R    F    P++ +L +A +RN+ PLP +    G RLPP++YCLTA  + +
Sbjct: 71  VRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129


>At1g54140 [K] KOG3334 Transcription initiation factor TFIID subunit TAF9
           (also component of histone acetyltransferase SAGA)
          Length = 183

 Score = 82.4 bits (202), Expect = 1e-16
 Identities = 43/121 (35%), Positives = 67/121 (54%), Gaps = 2/121 (1%)

Query: 10  DTPRDVRXXXXXXASQSVLQYEDKVPLQLMDFAHRYTKGVLKDAIAYREYVGGSASDVSI 69
           D PRD +       S  V  YE +V  Q ++  +RY   VL DA  Y E+   S  ++  
Sbjct: 8   DVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHA--SKPNIDC 65

Query: 70  EDIRLAIGARTQYQFKPTAPKELMLQLAAERNKKPLPNVVSSWGVRLPPEKYCLTAKEWS 129
           +D++LAI ++  + F    P+E++L+LAA RNK PLP  ++  GV LPPE+  L +  + 
Sbjct: 66  DDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPNYQ 125

Query: 130 I 130
           +
Sbjct: 126 L 126


>Hs20070280 [K] KOG3334 Transcription initiation factor TFIID subunit TAF9
           (also component of histone acetyltransferase SAGA)
          Length = 251

 Score = 81.6 bits (200), Expect = 2e-16
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 10  DTPRDVRXXXXXXASQSVLQYEDKVPLQLMDFAHRYTKGVLKDAIAYREYVGGSASDVSI 69
           + PRD            + +YE +V  Q+++FA RY   +L DA  Y  +      +V  
Sbjct: 11  NAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHA--KKPNVDA 68

Query: 70  EDIRLAIGARTQYQFKPTAPKELMLQLAAERNKKPLPNVVSSWGVRLPPEKYCLTAKEWS 129
           +D+RLAI  R    F    P++ +L +A ++N+ PLP +    G RLPP++YCLTA  + 
Sbjct: 69  DDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYR 128

Query: 130 I 130
           +
Sbjct: 129 L 129


>7293389 [K] KOG3334 Transcription initiation factor TFIID subunit TAF9
           (also component of histone acetyltransferase SAGA)
          Length = 278

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 12  PRDVRXXXXXXASQSVLQYEDKVPLQLMDFAHRYTKGVLKDAIAYREYVGGSASDVSIED 71
           P+D +         +V +YE +V  QL++F  RY   +L DA  Y  +      D  ++D
Sbjct: 19  PKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYANHARKKTID--LDD 76

Query: 72  IRLAIGARTQYQFKPTAPKELMLQLAAERNKKPLPNVVSSWGVRLPPEKYCLTAKEWSI 130
           +RLA        F     + ++ ++A  RN  PLP +    G+RLPP++YCLT   + +
Sbjct: 77  VRLATEVTLDKSFTGPLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKL 135


>ECU01g1330 [K] KOG3334 Transcription initiation factor TFIID subunit TAF9
           (also component of histone acetyltransferase SAGA)
          Length = 137

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 12  PRDVRXXXXXXASQSVLQYEDKVPLQLMDFAHRYTKGVLKDAIAYREYVGGSASDVSIED 71
           PRD +       S  + + E KV +QL++FA+RYT  VL+DA+ + ++ G   + ++  D
Sbjct: 9   PRDAKVISVILRSLGIEECEPKVIIQLLEFAYRYTTDVLEDALLFAKHTG--RTHITTSD 66

Query: 72  IRLAIGARTQYQFKPTAPKELMLQLAAERNKKPLPNVVSSWGVRLPPEKYCLTAKEWSI 130
           ++LA+  +    F P  P++ + +++   N KPL        +R+PP    L   ++ +
Sbjct: 67  VKLALQTKVGRHFVPPPPRQYLSEISTMVNSKPLTIPDGENLIRVPPSSSALLNLDYEV 125


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,855,900
Number of Sequences: 60738
Number of extensions: 281224
Number of successful extensions: 409
Number of sequences better than 1.0e-05: 7
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 7
length of query: 132
length of database: 30,389,216
effective HSP length: 94
effective length of query: 38
effective length of database: 24,679,844
effective search space: 937834072
effective search space used: 937834072
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)