ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI6696 good AYT KOG1909 Nuclear structure Ran GTPase-activating protein r_klactVI6696 good AYT KOG1909 RNA processing and modification Ran GTPase-activating protein r_klactVI6696 good AYT KOG1909 Signal transduction mechanisms Ran GTPase-activating protein

Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI6696 2329465  2330631 389  
         (389 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   
Score E Sequences producing significant alignments: (bits) Value YMR235c [AYT] KOG1909 Ran GTPase-activating protein 365 e-101 SPAC22E12.07 [AYT] KOG1909 Ran GTPase-activating protein 226 6e-59 7298584 [AYT] KOG1909 Ran GTPase-activating protein 146 6e-35 CE25793 [AYT] KOG1909 Ran GTPase-activating protein 145 1e-34 Hs4506411 [AYT] KOG1909 Ran GTPase-activating protein 141 2e-33 ECU05g0620 [AYT] KOG1909 Ran GTPase-activating protein 97 5e-20 At3g63130_2 [AYT] KOG1909 Ran GTPase-activating protein 70 5e-12 At5g19320_2 [AYT] KOG1909 Ran GTPase-activating protein 67 3e-11 >YMR235c [AYT] KOG1909 Ran GTPase-activating protein Length = 407 Score = 365 bits (938), Expect = e-101 Identities = 191/333 (57%), Positives = 238/333 (71%), Gaps = 1/333 (0%) Query: 3 FSKAGLQQKWTSEEDIKSVLDELKSMDKVTSLDLSGNTIGVEASRALAKTIKENASIRDN 62 +S +G K T+ +DIK L+EL ++ T LDLSGNTIG EAS ALAK I EN +R++ Sbjct: 16 YSISGKALKLTTSDDIKPYLEELAALKTCTKLDLSGNTIGTEASEALAKCIAENTQVRES 75 Query: 63 VEEVNFADMYTSRLVDEVVESXXXXXXXXXXXXXXSKVDLSDNAFGLRTIDSLEKFIRET 122 + EVNFAD+YTSRLVDEVV+S V+LSDNAFGLRTI+ LE +I Sbjct: 76 LVEVNFADLYTSRLVDEVVDSLKFLLPVLLKCPHLEIVNLSDNAFGLRTIELLEDYIAHA 135 Query: 123 VQLKHLILANNGMGPFAGERIGKALYQLAKNKEKAGESLLETFVCGRNRLENGSTRWLSQ 182 V +KHLIL+NNGMGPFAGERIGKAL+ LA+NK+ A + LETF+CGRNRLENGS +L+ Sbjct: 136 VNIKHLILSNNGMGPFAGERIGKALFHLAQNKKAASKPFLETFICGRNRLENGSAVYLAL 195 Query: 183 GLRAHGDDLHAVRLYQNGIRPQGCINLIKHGLSHNKNLHVLDLQDNTFTAVASETLAKYL 242 GL++H + L V+LYQNGIRP+G LI +GL + KNL +LDLQDNTFT AS LAK L Sbjct: 196 GLKSHSEGLKVVKLYQNGIRPKGVATLIHYGLQYLKNLEILDLQDNTFTKHASLILAKAL 255 Query: 243 TNWA-QLKELNLNDCLLKGPGSHAVLKVLKENKFDDLETLKLQYNELTQQSLEHLLIPAL 301 W L ELNLNDCLLK GS V KV E KF +L LK +YNE+ Q+++E +PA+ Sbjct: 256 PTWKDSLFELNLNDCLLKTAGSDEVFKVFTEVKFPNLHVLKFEYNEMAQETIEVSFLPAM 315 Query: 302 QDGNLPSLKLLELNGNRLEEDSDPLSILPTLFD 334 + GNLP L+ LE+NGNRL+EDSD L +L + FD Sbjct: 316 EKGNLPELEKLEINGNRLDEDSDALDLLQSKFD 348 >SPAC22E12.07 [AYT] KOG1909 Ran GTPase-activating protein Length = 386 Score = 226 bits (575), Expect = 6e-59 Identities = 142/375 (37%), Positives = 202/375 (53%), Gaps = 9/375 (2%) Query: 16 EDIKSVLDELKSMDKVTSLDLSGNTIGVEASRALAKTIKENASIRDNVEEVNFADMYTSR 75 ED KSV L D V + LSGNTIG EA+R L+ EN + + ++E F+D++T R Sbjct: 19 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS----ENIASKKDLEIAEFSDIFTGR 74 Query: 76 LVDEVVESXXXXXXXXXXXXXXSKVDLSDNAFGLRTIDSLEKFIRETVQLKHLILANNGM 135 + DE+ E+ V LSDNAFG + L F+ + L+HL L NNG+ Sbjct: 75 VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 Query: 136 GPFAGERIGKALYQLAKNKEKAGESLLETFVCGRNRLENGSTRWLSQGLRAHGDDLHAVR 195 GP AG +I +AL +LA NK+ L + +CGRNRLENGS + ++ ++H LH V+ Sbjct: 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL-LHTVK 193 Query: 196 LYQNGIRPQGCINLIKHGLSHNKNLHVLDLQDNTFTAVASETLAKYLTNWAQLKELNLND 255 + QNGIRP+G +L+ GL++ + L VLDLQDNTFT + S LA L +W L+EL LND Sbjct: 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 Query: 256 CLLKGPGSHAVLKVLKENKFDDLETLKLQYNELTQQSLEHLLIPALQDGNLPSLKLLELN 315 CLL G+ AV+ + + L+TL+LQYNE+ ++ L + D +P L LELN Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL--KTVIDEKMPDLLFLELN 311 Query: 316 GNRLEEDSDPLSILPTLFD--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWEPTQFVKD 373 GNR E+ D + + +F G EP ++ Sbjct: 312 GNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEE 371 Query: 374 ETVDELASELAKTHL 388 + ELA EL+K H+ Sbjct: 372 KEDKELADELSKAHI 386 >7298584 [AYT] KOG1909 Ran GTPase-activating protein Length = 596 Score = 146 bits (368), Expect = 6e-35 Identities = 103/329 (31%), Positives = 166/329 (50%), Gaps = 19/329 (5%) Query: 12 WTSEEDIKSVLDELKSMDKVTSLDLSGNTIGVEASRALAKTIKENASIRDNVEEVNFADM 71 W + D++ V+D L V L+L GNT+GVEA++A+ + +K + R + + +M Sbjct: 28 WNTAADVQDVVDALNKQTTVHYLNLDGNTLGVEAAKAIGEGLKRHPEFR----KALWKNM 83 Query: 72 YTSRLVDEVVESXXXXXXXXXXXXXXSKV-DLSDNAFGLRTIDSLEKFIRETV--QLKHL 128 +T RL+ E+ E+ V DLSDNA G + LE+ +R V L+ L Sbjct: 84 FTGRLISEIPEALKHLGAALIVAGAKLTVLDLSDNALGPNGMRGLEELLRSPVCYSLQEL 143 Query: 129 ILANNGMGPFAGERIGKALYQLAKNKEKAGESL-LETFVCGRNRLENGSTRWLSQGLRAH 187 +L N G+GP G + +AL L N KAG L L F+ RNRLE+ ++ + Sbjct: 144 LLCNCGLGPEGGSMLSRALIDLHANANKAGFPLQLRVFIGSRNRLEDAGATEMATAFQTL 203 Query: 188 GDDLHAVRLYQNGIRPQGCINLIKHGLSHNKNLHVLDLQDNTFTAVASETLAKYLTNWAQ 247 + L QN I +G + + HN +L VL++ DNT + +E +A+ L Sbjct: 204 -KTFEEIVLEQNSIYIEG-VEALAESFKHNPHLRVLNMNDNTLKSEGAEKIAEALPFLPL 261 Query: 248 LKELNLNDCLLKGPGSHAVLKVLKENKFDDLETLKLQYNELTQQSLEHLLIPALQDGNLP 307 L+E++ DCL+K G++ + L+ + LE + L +NE+ +L+ A+ GN P Sbjct: 262 LREMSFGDCLIKTNGAYHFGEALERGN-ERLEVIDLGFNEINSDG-GLVLVNAM--GNKP 317 Query: 308 SLKLLELNGNRLEEDS-----DPLSILPT 331 L++L L+GN E+ +S LPT Sbjct: 318 KLRILNLDGNSFGEEGSEKIISEMSKLPT 346 >CE25793 [AYT] KOG1909 Ran GTPase-activating protein Length = 980 Score = 145 bits (365), Expect = 1e-34 Identities = 102/294 (34%), Positives = 157/294 (52%), Gaps = 11/294 (3%) Query: 7 GLQQKWTSEEDIKSVLDELKSMDKVTSLDLSGNTIGVEASRALAKTIKENASIRDNVEEV 66 G Q K +EE+I V+D+++ + LD GNT+ V A + +A+++K R ++E Sbjct: 11 GKQLKLDTEEEISKVIDQIRKHLNLEVLDFRGNTLSVLAGKLIAESLKT----RRELKEC 66 Query: 67 NFADMYTSRLVDEV-VESXXXXXXXXXXXXXXSKVDLSDNAFGLRTIDSLEKFIRETV-- 123 ++DM+T RL DE+ + + +DLSDNAFG SL F++ Sbjct: 67 IWSDMFTGRLKDEIPLVLDALGEALTASGCRLTTLDLSDNAFGAGLSTSLYNFLQSPALY 126 Query: 124 QLKHLILANNGMGPFAGERIGKALYQLAKNKEKAGESL-LETFVCGRNRLENGSTRWLSQ 182 L++LIL NNG+G AG+ +GKAL L +KAG L L+ FVCGRNRLE ST LS Sbjct: 127 SLENLILNNNGLG-LAGKTVGKALCSLIDASKKAGTPLKLKKFVCGRNRLEVESTIALSD 185 Query: 183 GLRAHGDDLHAVRLYQNGIRPQGCINLIKHGLSHNKNLHVLDLQDNTFTAVASETLAKYL 242 G L +RL QNGIR G I L + NK L ++D+ DN + +++ L Sbjct: 186 AFIKLGT-LEEIRLPQNGIRDDGIIALAE-AFRMNKKLRIIDINDNFCCPEGAIQISEVL 243 Query: 243 TNWAQLKELNLNDCLLKGPGSHAVLKVLKENKFDDLETLKLQYNELTQQSLEHL 296 ++ ++ L+L DC+ PG A++ L + D L+ + L N +T ++ + Sbjct: 244 SDLQFIEVLDLGDCVCDDPGVLAIIAELDKINRDCLKKVVLSGNNITSDVIDEI 297 Score = 128 bits (322), Expect = 1e-29 Identities = 100/327 (30%), Positives = 166/327 (50%), Gaps = 14/327 (4%) Query: 11 KWTSEEDIKSVLDELKSMDKVTSLDLSGNTIGVEASRALAKTIKENASIRDNVEEVNFAD 70 K + E + V+ + + + +L+L GNT+G+ A +AK ++ + + E ++D Sbjct: 421 KLDTAESAEPVVKVIAAASSMKALELRGNTLGIAAGNVIAKALESHPEL----ERCLWSD 476 Query: 71 MYTSRLVDEVVESXXXXXXXXXXXXXXSK-VDLSDNAFGLRTIDSLEKFIRE--TVQLKH 127 ++T RL +E+ K +DLSDNAFG D+L+ + + L+ Sbjct: 477 LFTGRLKNEIPPILEALGKAMMTAGCKIKELDLSDNAFGPIGADALKDLLESPSSFSLEV 536 Query: 128 LILANNGMGPFAGERIGKALYQ-LAKNKEKAGESLL--ETFVCGRNRLENGSTRWLSQGL 184 L L NNG+G G++I K+L + L K+ GE+ L +TF+ GRNRLEN L+ Sbjct: 537 LKLNNNGLG-IGGKQIAKSLTECLRKSIAVGGENRLRLKTFIAGRNRLENPGAHALAATF 595 Query: 185 RAHGDDLHAVRLYQNGIRPQGCINLIKHGLSHNKNLHVLDLQDNTFTAVASETLAKYLTN 244 +A + + + QNGI +G I + L HN+NL L L+DNT ++ LAK L + Sbjct: 596 KAL-ETVEWFDVRQNGIHEEG-IRALVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLES 653 Query: 245 WAQLKELNLNDCLLKGPGSHAVLKVLKENKFDDLETLKLQYNELTQQSLEHLLIPALQDG 304 W +L+ LNL+DCL++ G + ++ L L+ + L NELT + L+ + Sbjct: 654 WPKLEVLNLSDCLIRDAGCNYIIDHLNPQHHRHLKNVYLCGNELTPPVAKLLIQKWSKFD 713 Query: 305 NLPSLKLLELNGNRL-EEDSDPLSILP 330 L +L ++ N +E SD + P Sbjct: 714 GLTPKPVLHIHTNSFGDEFSDVAGMAP 740 >Hs4506411 [AYT] KOG1909 Ran GTPase-activating protein Length = 587 Score = 141 bits (355), Expect = 2e-33 Identities = 100/320 (31%), Positives = 162/320 (50%), Gaps = 14/320 (4%) Query: 7 GLQQKWTSEEDIKSVLDELKSMDKVTSLDLSGNTIGVEASRALAKTIKENASIRDNVEEV 66 G K + ED K V+ E++ D + +L L GNT+GVEA+R +AK +++ + ++ Sbjct: 27 GKSLKLNTAEDAKDVIKEIEDFDSLEALRLEGNTVGVEAARVIAKALEKKSELK----RC 82 Query: 67 NFADMYTSRLVDEVVES-XXXXXXXXXXXXXXSKVDLSDNAFGLRTIDSLEKFIRETV-- 123 +++DM+T RL E+ + ++DLSDNAFG + E ++ + Sbjct: 83 HWSDMFTGRLRTEIPPALISLGEGLITAGAQLVELDLSDNAFGPDGVQGFEALLKSSACF 142 Query: 124 QLKHLILANNGMGPFAGERIGKALYQLAKNKEKAGESL-LETFVCGRNRLENGSTRWLSQ 182 L+ L L N GMG G+ + AL + + G+ L L+ FV GRNRLEN L++ Sbjct: 143 TLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGKPLALKVFVAGRNRLENDGATALAE 202 Query: 183 GLRAHGDDLHAVRLYQNGIRPQGCINLIKHGLSHNKNLHVLDLQDNTFTAVASETLAKYL 242 R G L V + QNGI G I + + N L V++L DNTFT + +A+ L Sbjct: 203 AFRVIG-TLEEVHMPQNGINHPG-ITALAQAFAVNPLLRVINLNDNTFTEKGAVAMAETL 260 Query: 243 TNWAQLKELNLNDCLLKGPGSHAVLKVLKENKFDDLETLKLQYNELTQQSLEHLLIPALQ 302 Q++ +N DCL++ G+ A+ ++ L+ L L + E+ + + L A Sbjct: 261 KTLRQVEVINFGDCLVRSKGAVAIADAIR-GGLPKLKELNLSFCEIKRDA---ALAVAEA 316 Query: 303 DGNLPSLKLLELNGNRLEED 322 + L+ L+LNGN L E+ Sbjct: 317 MADKAELEKLDLNGNTLGEE 336 >ECU05g0620 [AYT] KOG1909 Ran GTPase-activating protein Length = 355 Score = 96.7 bits (239), Expect = 5e-20 Identities = 92/342 (26%), Positives = 159/342 (45%), Gaps = 34/342 (9%) Query: 1 MSFSKAGLQQKWTSEEDIKSVLDELK-SMDKVTSLDLSGNTIGVEASRALAKTIKENASI 59 M FS ++K+ ++ED+ V++E++ SMD++ +DLSGN EA + ++ ++ Sbjct: 1 MKFSIGDQKKKYETKEDVSGVVEEMEMSMDELVEVDLSGNYFSEEAMEEICNVLR---NV 57 Query: 60 RDNVEEVNFADMYTSRLVDEVVESXXXXXXXXXXXXXXSKVDLSDNAFGLRTIDSLEKFI 119 R N+ VN + + L E + S K+DLSDNA L + I Sbjct: 58 R-NLRVVNLSSAFLG-LDKEKLYSNLVMLSKALAGHRMQKIDLSDNAISSEFPPELGELI 115 Query: 120 RETVQLKHLILANNGMGPFAGERIGKALYQLAKNKEKAGESLLETFVCGRNRLENGSTRW 179 + L HL + N G+G G R+G L K+ A ++ LE +NR + + Sbjct: 116 SSSTDLVHLKMNNCGLGKIGGGRLGGYL------KKIADKTKLEVVDIAQNRFFS-FPKE 168 Query: 180 LSQGLRAHGDDLHAVRLYQNGIRPQGCINLIKHGLSHNKNLHVLDLQDNTFTAVASETLA 239 LS+ L +++ +R+ N I + + +K SH +L VLD++DN + S L Sbjct: 169 LSEAL-LEFENIKELRIQYNTIEEETMLAFLKAFRSH--SLEVLDIRDNFLSLEGSRYLG 225 Query: 240 KYLTNWAQLKELNLNDCLLKGPGSHAVLKVLKENKF------DDLET------LKLQYNE 287 W L+EL DC++ G + L+ E KF D +T L + YNE Sbjct: 226 DLYCEW-NLRELRTGDCMMSNEGVKSFLRRANE-KFVPMPLPGDYDTRRGGIILDISYNE 283 Query: 288 LTQQSLEHLLIPALQDGNLPSLKLLELNGNRLEEDSDPLSIL 329 Q ++E L+ ++ ++K L + GN E+ + + ++ Sbjct: 284 FEQDAVELLVDFCRRN----TIKELAVFGNYYEDIGEVVEVV 321 >At3g63130_2 [AYT] KOG1909 Ran GTPase-activating protein Length = 417 Score = 70.1 bits (170), Expect = 5e-12 Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 20/321 (6%) Query: 3 FSKAGLQQKWTSEEDIKSVLDELKS-MDKVTSLDLSGNTIGVEASRALAKTIKENASIRD 61 F +G + + EE+ + +L L + T + S + G EA++ A + +SI+D Sbjct: 2 FDISGGSRAFIEEEEARDLLRPLADPRNSYTKIRFSNRSFGSEAAKFAASVL---SSIKD 58 Query: 62 NVEEVNFADMYTSRLVDEVVESXXXXXXXXXXXXXXSKVDLSDNAFGLRTIDSLEKFIRE 121 + EV+ +D R E +E ++LSDNA G + I + I Sbjct: 59 QLTEVDLSDFVAGRPEAEALE-VMNMFSSALEGSKLRYLNLSDNALGEKGIRAFASLINS 117 Query: 122 TVQLKHLILANNGMGPFAGERIGKALYQLAKNKEKAGESLLETFVCGRNRLENGSTRWLS 181 L+ L L N+G+ E +A+ +L + +K + G + G+T ++ Sbjct: 118 QHDLEELYLMNDGIS----EDAARAVRELLPSTDKIRVLQFHNNMTG----DEGATA-IA 168 Query: 182 QGLRAHGDDLHAVRLYQNGIRPQGCINLIKHGLSHNKNLHVLDLQDNTFTAVASETLAKY 241 + +R L R I +G + L + L H +L LDL+DN F LAK Sbjct: 169 EIVR-ECPSLEDFRCSSTRIGSEGGVALAE-ALEHCSHLKKLDLRDNMFGVEGGIALAKT 226 Query: 242 LTNWAQLKELNLNDCLLKGPGSHAVLKVLKENKFDDLETLKLQYNELTQQSLEHLLIPAL 301 L+ L E+ ++ L+ G+ A+ + L ++ LE L+L N++T +S +L A Sbjct: 227 LSVLTHLTEIYMSYLNLEDEGTEALSEALLKSA-PSLEVLELAGNDITVKSTGNL---AA 282 Query: 302 QDGNLPSLKLLELNGNRLEED 322 + SL L L+ N L+++ Sbjct: 283 CIASKQSLAKLNLSENELKDE 303 >At5g19320_2 [AYT] KOG1909 Ran GTPase-activating protein Length = 422 Score = 67.4 bits (163), Expect = 3e-11 Identities = 74/310 (23%), Positives = 139/310 (43%), Gaps = 24/310 (7%) Query: 16 EDIKSVLDELKSMDKV-TSLDLSGNTIGVEASRALAKTIKENASIRDNVEEVNFADMYTS 74 E+ + +L LK T + S + G+ A+R + AS++D ++EV+ +D Sbjct: 15 EEAEELLKPLKEPGNAYTKICFSNRSFGLGAARVAEPIL---ASLKDQLKEVDLSDFVAG 71 Query: 75 RLVDEVVESXXXXXXXXXXXXXXSKVDLSDNAFGLRTIDSLEKFIRETVQLKHLILANNG 134 R E +E S ++LSDNA G + + + ++ L+ L L N+G Sbjct: 72 RPELEALE-VMNIFSDALQGSILSSLNLSDNALGEKGVRAFGALLKSLSSLEELYLMNDG 130 Query: 135 MGPFAGERIGKALYQLAKNKEKAGESLLETFVCGRNRLENGSTRWLSQGLRAHGDDLHAV 194 + A + A+ +L + E L N + +++ ++ L Sbjct: 131 ISKEAAQ----AVSELIPSTEN-----LRVLHFHNNMTGDEGALAIAEVVK-RSPLLENF 180 Query: 195 RLYQNGIRPQGCINLIKHGLSHNKNLHVLDLQDNTFTAVASETLAKYLTNWAQLKELNLN 254 R + +G I L L H ++ LDL+DN F A +L+K L+++ + EL L+ Sbjct: 181 RCSSTRVGSKGGIAL-SEALEHCTHMEKLDLRDNMFGTEAGVSLSKTLSSFKHMTELYLS 239 Query: 255 DCLLKGPGSHAVLKVLKENKFDDLETLKLQYNELTQQSLEHL--LIPALQDGNLPSLKLL 312 L+ G+ A++ LKE+ +E L++ N++T ++ + + A QD L L Sbjct: 240 YLNLEDEGAIAIVNALKESA-SPIEVLEMAGNDITVEAASAIAACVAAKQD-----LNKL 293 Query: 313 ELNGNRLEED 322 L+ N L+++ Sbjct: 294 NLSENELKDE 303 Database: KOG eukaryal database 04/03 Posted date: Apr 14, 2003 1:07 PM Number of letters in database: 30,389,216 Number of sequences in database: 60,738 Lambda K H 0.314 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,516,500 Number of Sequences: 60738 Number of extensions: 801522 Number of successful extensions: 2096 Number of sequences better than 1.0e-05: 8 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 2023 Number of HSP's gapped (non-prelim): 19 length of query: 389 length of database: 30,389,216 effective HSP length: 108 effective length of query: 281 effective length of database: 23,829,512 effective search space: 6696092872 effective search space used: 6696092872 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)