ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6702 good CU KOG4097 Energy production and conversion Succinate dehydrogenase membrane anchor subunit and related proteins r_klactVI6702 good CU KOG4097 Intracellular trafficking, secretion, and vesicular transport Succinate dehydrogenase membrane anchor subunit and related proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI6702 2332264  2332842 193  
         (193 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YOR297c [CU] KOG4097 Succinate dehydrogenase membrane anchor sub...   128   5e-30
YDR178w [CU] KOG4097 Succinate dehydrogenase membrane anchor sub...   107   1e-23
SPBP23A10.16 [CU] KOG4097 Succinate dehydrogenase membrane ancho...    98   6e-21
YLR164w [CU] KOG4097 Succinate dehydrogenase membrane anchor sub...    90   2e-18

>YOR297c [CU] KOG4097 Succinate dehydrogenase membrane anchor subunit and
           related proteins
          Length = 192

 Score =  128 bits (321), Expect = 5e-30
 Identities = 66/126 (52%), Positives = 82/126 (64%), Gaps = 7/126 (5%)

Query: 67  FHGSYHWDYERITAVSLVPLTMVPLYGAMSSATFASGFPFPVIDSLLASTILIHAYLGIT 126
           F  SY  DYERI   +L+PLTMVP Y     A+F  G   P++D+ L+S  LI+   G T
Sbjct: 73  FKDSYQKDYERIAKYTLIPLTMVPFY-----ASFTGGVINPLLDASLSSIFLIYLQYGFT 127

Query: 127 SCIIDYIPKRKFGFWHKAAKFALALGSSFSLYGIYVLETENNGLIDLVSTLWDKDKGDSR 186
           SCIIDYIPK K+  WHK A + L  GS  SLYGIY LET+NNG +DLV  LW+++  D  
Sbjct: 128 SCIIDYIPKGKYPRWHKLALYCLYGGSMLSLYGIYELETKNNGFVDLVKKLWNEN--DDH 185

Query: 187 AYVFGR 192
            Y+FGR
Sbjct: 186 LYIFGR 191


>YDR178w [CU] KOG4097 Succinate dehydrogenase membrane anchor subunit and
           related proteins
          Length = 181

 Score =  107 bits (266), Expect = 1e-23
 Identities = 56/135 (41%), Positives = 77/135 (56%), Gaps = 8/135 (5%)

Query: 51  VTGNVNDNLPKTEPNWFHGSYHWDYERITAVSLVPLTMVPLYGAMSSATFASGFPFPVID 110
           V G  ND       N   GSYHW  E+I A+S+VPL         ++A   +G      D
Sbjct: 47  VRGTPNDAYVPPPENKLEGSYHWYMEKIFALSVVPLA--------TTAMLTTGPLSTAAD 98

Query: 111 SLLASTILIHAYLGITSCIIDYIPKRKFGFWHKAAKFALALGSSFSLYGIYVLETENNGL 170
           S  +  +L + Y+   SCI DYI +R +G WHK A + L LGS+ SL+GIY LETEN+G+
Sbjct: 99  SFFSVMLLGYCYMEFNSCITDYISERVYGVWHKYAMYMLGLGSAVSLFGIYKLETENDGV 158

Query: 171 IDLVSTLWDKDKGDS 185
           + LV +LWD  + D+
Sbjct: 159 VGLVKSLWDSSEKDN 173


>SPBP23A10.16 [CU] KOG4097 Succinate dehydrogenase membrane anchor subunit and
           related proteins
          Length = 186

 Score = 98.2 bits (243), Expect = 6e-21
 Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 10/166 (6%)

Query: 14  MLRTSLLHRQLR-GIRLPAVFSSSKFAKYKLIXXXXXXVTGNVNDNLPKTEPNWFHGSYH 72
           ML+T L    LR G  L AV S S  +  K+       + G VND       +  HGSYH
Sbjct: 28  MLQTRLGLGALRQGRLLFAVKSFSTTSVAKIFPPPPQTIKGTVNDAAVFPHHSKLHGSYH 87

Query: 73  WDYERITAVSLVPLTMVPLYGAMSSATFASGFPFPVIDSLLASTILIHAYLGITSCIIDY 132
           WD+ERI A+++VP  M+PL+         +G   P++D+ LA T++ HA+LG  SC+IDY
Sbjct: 88  WDFERIIAIAMVPQVMIPLF---------TGTSHPLMDAALACTLITHAHLGFESCVIDY 138

Query: 133 IPKRKFGFWHKAAKFALALGSSFSLYGIYVLETENNGLIDLVSTLW 178
            P R+F        + L   +  +L G+Y   T + GL + +  LW
Sbjct: 139 FPARRFKKLSPLMHWILRGCTVLTLIGVYEFNTNDIGLTEGIKKLW 184


>YLR164w [CU] KOG4097 Succinate dehydrogenase membrane anchor subunit and
           related proteins
          Length = 168

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 8/129 (6%)

Query: 51  VTGNVNDNLPKTEPNWFHGSYHWDYERITAVSLVPLTMVPLYGAMSSATFASGFPFPVID 110
           V+G  ND+      +   GSYHW  ER  +++++PL  VPL      +TF         D
Sbjct: 39  VSGTANDSSYMPPESRAQGSYHWIVERGLSLAVLPLIAVPLVTTGPISTFT--------D 90

Query: 111 SLLASTILIHAYLGITSCIIDYIPKRKFGFWHKAAKFALALGSSFSLYGIYVLETENNGL 170
           + L+  +L H ++G  SCIIDYI +R +G  H  A + L+LGS  S  GIY LE++  GL
Sbjct: 91  TFLSLVLLGHCHIGFQSCIIDYISERVYGKVHHYAMYLLSLGSFLSFVGIYKLESQEAGL 150

Query: 171 IDLVSTLWD 179
           I  + +LWD
Sbjct: 151 IASLKSLWD 159


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.325    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,798,885
Number of Sequences: 60738
Number of extensions: 416253
Number of successful extensions: 979
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 4
length of query: 193
length of database: 30,389,216
effective HSP length: 101
effective length of query: 92
effective length of database: 24,254,678
effective search space: 2231430376
effective search space used: 2231430376
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)