ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI6778.1   suspect: LH  A     KOG0337   RNA processing and modification                                ATP-dependent RNA helicase

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI6778.1 2360924 2360787 -46  
         (46 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77030 [A] KOG0337 ATP-dependent RNA helicase                       27   7.0  
CE19684 [A] KOG2562 Protein phosphatase 2 regulatory subunit           26   9.2  

>At1g77030 [A] KOG0337 ATP-dependent RNA helicase
          Length = 349

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 15  YSVTAITSRFHRGDRGSTPRIGVFFLFFIS 44
           Y V   T  F   D GSTP  G  F+FFIS
Sbjct: 308 YGVVVSTLDFESSDLGSTP--GRTFIFFIS 335


>CE19684 [A] KOG2562 Protein phosphatase 2 regulatory subunit
          Length = 1341

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 3   SGNSYSSKVTIRYSVTA---ITSRFHRGDRGSTP 33
           +GN Y S+  ++ + T+   +TS FHR    STP
Sbjct: 212 NGNGYPSQQRVQTTFTSNGPVTSTFHREYHNSTP 245


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.328    0.140    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,393,408
Number of Sequences: 60738
Number of extensions: 53835
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 2
length of query: 46
length of database: 30,389,216
effective HSP length: 22
effective length of query: 24
effective length of database: 29,052,980
effective search space: 697271520
effective search space used: 697271520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)