ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6809 good J KOG0900 Translation, ribosomal structure and biogenesis 40S ribosomal protein S20
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6809 2372720 2373070 117
(117 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YHL015w [J] KOG0900 40S ribosomal protein S20 179 7e-46
SPCC576.09 [J] KOG0900 40S ribosomal protein S20 139 6e-34
Hs4506697 [J] KOG0900 40S ribosomal protein S20 134 2e-32
7300661 [J] KOG0900 40S ribosomal protein S20 132 8e-32
CE25167 [J] KOG0900 40S ribosomal protein S20 129 7e-31
At5g62300 [J] KOG0900 40S ribosomal protein S20 125 9e-30
At3g47370 [J] KOG0900 40S ribosomal protein S20 125 9e-30
At3g45030 [J] KOG0900 40S ribosomal protein S20 125 9e-30
Hs18544255 [J] KOG0900 40S ribosomal protein S20 123 4e-29
Hs18547257 [J] KOG0900 40S ribosomal protein S20 117 2e-27
Hs18577856 [J] KOG0900 40S ribosomal protein S20 107 3e-24
Hs22043449 [J] KOG0900 40S ribosomal protein S20 106 6e-24
Hs20548610 [J] KOG0900 40S ribosomal protein S20 100 6e-22
Hs22045664 [J] KOG0900 40S ribosomal protein S20 98 2e-21
Hs20542897 [J] KOG0900 40S ribosomal protein S20 61 2e-10
ECU11g0720 [J] KOG0900 40S ribosomal protein S20 52 1e-07
At3g13120 [J] KOG0900 40S ribosomal protein S20 48 2e-06
>YHL015w [J] KOG0900 40S ribosomal protein S20
Length = 121
Score = 179 bits (453), Expect = 7e-46
Identities = 89/102 (87%), Positives = 95/102 (92%)
Query: 16 IHKIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKT 75
I KIRI LTSTKVKQLENVS+NI+KNAE LVKKGPVRLPTKVLKISTRKTPNGEGSKT
Sbjct: 19 IIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKT 78
Query: 76 WDTYEMRIHKRYIDLEAPAHIVKRITQITIEPGVDVEVIIAA 117
W+TYEMRIHKRYIDLEAP IVKRITQITIEPGVDVEV++A+
Sbjct: 79 WETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVVAS 120
>SPCC576.09 [J] KOG0900 40S ribosomal protein S20
Length = 118
Score = 139 bits (350), Expect = 6e-34
Identities = 67/101 (66%), Positives = 83/101 (81%)
Query: 16 IHKIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKT 75
+H+IRI LTS V+ LE V ++++ A+ +L KGPVRLPTK+LKI+TRKTPNGEGSKT
Sbjct: 17 VHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKT 76
Query: 76 WDTYEMRIHKRYIDLEAPAHIVKRITQITIEPGVDVEVIIA 116
W+TYEMRIHKR IDL +P+ IVK+IT I IEPGV+VEV IA
Sbjct: 77 WETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117
>Hs4506697 [J] KOG0900 40S ribosomal protein S20
Length = 119
Score = 134 bits (337), Expect = 2e-32
Identities = 66/101 (65%), Positives = 81/101 (79%)
Query: 16 IHKIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKT 75
IH+IRI LTS VK LE V A++I+ A+ L KGPVR+PTK L+I+TRKTP GEGSKT
Sbjct: 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKT 76
Query: 76 WDTYEMRIHKRYIDLEAPAHIVKRITQITIEPGVDVEVIIA 116
WD ++MRIHKR IDL +P+ IVK+IT I+IEPGV+VEV IA
Sbjct: 77 WDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIA 117
>7300661 [J] KOG0900 40S ribosomal protein S20
Length = 120
Score = 132 bits (332), Expect = 8e-32
Identities = 64/101 (63%), Positives = 79/101 (77%)
Query: 16 IHKIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKT 75
+H+IRI LTS V+ LENV ++I A+ L KGPVR+PTK L+I+TRKTP GEGSKT
Sbjct: 19 VHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRITTRKTPCGEGSKT 78
Query: 76 WDTYEMRIHKRYIDLEAPAHIVKRITQITIEPGVDVEVIIA 116
WD ++MRIHKR IDL +P+ IVK+IT I IEPGV+VEV IA
Sbjct: 79 WDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIA 119
>CE25167 [J] KOG0900 40S ribosomal protein S20
Length = 135
Score = 129 bits (324), Expect = 7e-31
Identities = 60/97 (61%), Positives = 78/97 (79%)
Query: 17 HKIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKTW 76
H+IR+ LTS VK LE V A +I A+ L+ KGP+R+PTKVL+I+TRKTP GEGSKTW
Sbjct: 35 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 94
Query: 77 DTYEMRIHKRYIDLEAPAHIVKRITQITIEPGVDVEV 113
D ++MRIHKR I+L APA ++++IT I+IEPGVD+EV
Sbjct: 95 DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEV 131
>At5g62300 [J] KOG0900 40S ribosomal protein S20
Length = 124
Score = 125 bits (314), Expect = 9e-30
Identities = 61/101 (60%), Positives = 78/101 (76%)
Query: 16 IHKIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKT 75
IHKIRI L+S VK LE V ++++ A+ +L KGPVR+PTKVLKI+TRK P GEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 76 WDTYEMRIHKRYIDLEAPAHIVKRITQITIEPGVDVEVIIA 116
WD +E+R+HKR IDL + +VK+IT ITIEPGV+VEV IA
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 122
>At3g47370 [J] KOG0900 40S ribosomal protein S20
Length = 122
Score = 125 bits (314), Expect = 9e-30
Identities = 61/101 (60%), Positives = 78/101 (76%)
Query: 16 IHKIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKT 75
IHKIRI L+S VK LE V ++++ A+ +L KGPVR+PTKVLKI+TRK P GEG+ T
Sbjct: 20 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 79
Query: 76 WDTYEMRIHKRYIDLEAPAHIVKRITQITIEPGVDVEVIIA 116
WD +E+R+HKR IDL + +VK+IT ITIEPGV+VEV IA
Sbjct: 80 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120
>At3g45030 [J] KOG0900 40S ribosomal protein S20
Length = 117
Score = 125 bits (314), Expect = 9e-30
Identities = 61/101 (60%), Positives = 78/101 (76%)
Query: 16 IHKIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKT 75
IHKIRI L+S VK LE V ++++ A+ +L KGPVR+PTKVLKI+TRK P GEG+ T
Sbjct: 15 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 74
Query: 76 WDTYEMRIHKRYIDLEAPAHIVKRITQITIEPGVDVEVIIA 116
WD +E+R+HKR IDL + +VK+IT ITIEPGV+VEV IA
Sbjct: 75 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 115
>Hs18544255 [J] KOG0900 40S ribosomal protein S20
Length = 130
Score = 123 bits (309), Expect = 4e-29
Identities = 62/101 (61%), Positives = 77/101 (75%)
Query: 16 IHKIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKT 75
IH+IRI LTS VK LE V ++I+ A+ L KGPVR+P K L+I+TRKT GE SKT
Sbjct: 28 IHQIRITLTSRNVKSLEKVCDDLIRGAKEKNLKVKGPVRMPAKTLRITTRKTTCGEDSKT 87
Query: 76 WDTYEMRIHKRYIDLEAPAHIVKRITQITIEPGVDVEVIIA 116
WD ++MRIHKR IDL +P+ IVK+IT I+IEPGV+VEV IA
Sbjct: 88 WDHFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIA 128
>Hs18547257 [J] KOG0900 40S ribosomal protein S20
Length = 149
Score = 117 bits (294), Expect = 2e-27
Identities = 61/101 (60%), Positives = 77/101 (75%), Gaps = 1/101 (0%)
Query: 16 IHKIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKT 75
IH+IRI +TS KVK LE V A++I+ A+ L KGPVR+PTK L+I+TRKTP E SKT
Sbjct: 48 IHRIRITVTSRKVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTP-CECSKT 106
Query: 76 WDTYEMRIHKRYIDLEAPAHIVKRITQITIEPGVDVEVIIA 116
WD + MRIHKR ID +P+ IVK++T I+IEPGV+VE IA
Sbjct: 107 WDCFGMRIHKRLIDWHSPSEIVKQVTSISIEPGVEVEGTIA 147
>Hs18577856 [J] KOG0900 40S ribosomal protein S20
Length = 104
Score = 107 bits (266), Expect = 3e-24
Identities = 52/83 (62%), Positives = 67/83 (80%)
Query: 34 VSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKTWDTYEMRIHKRYIDLEAP 93
V A++I+ A+ L KGPVR+ TK L+I+TRKTP GEGSKTWD ++MRIH+R IDL +P
Sbjct: 15 VCADLIRGAKEKNLKVKGPVRMLTKTLRITTRKTPCGEGSKTWDRFQMRIHQRLIDLHSP 74
Query: 94 AHIVKRITQITIEPGVDVEVIIA 116
+ IVK+IT I+IEPGV+VEV IA
Sbjct: 75 SEIVKQITSISIEPGVEVEVTIA 97
>Hs22043449 [J] KOG0900 40S ribosomal protein S20
Length = 234
Score = 106 bits (264), Expect = 6e-24
Identities = 53/91 (58%), Positives = 71/91 (77%), Gaps = 1/91 (1%)
Query: 25 STKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKTWDTYEMRIH 84
S +K LE V A++I+ A+ L KGPV++PTK +I+TRKTP GEGSKTWD ++MRIH
Sbjct: 142 SHSLKSLEEVCADLIRGAKERNLKVKGPVQMPTKTSRIATRKTPFGEGSKTWDHFQMRIH 201
Query: 85 KRYIDLEAPAHIVKRITQITIEPGVDVEVII 115
K+ IDL +P+ I K+IT I++EPGV+VEVII
Sbjct: 202 KQLIDLHSPSEI-KQITSISMEPGVEVEVII 231
>Hs20548610 [J] KOG0900 40S ribosomal protein S20
Length = 95
Score = 99.8 bits (247), Expect = 6e-22
Identities = 49/89 (55%), Positives = 66/89 (74%)
Query: 28 VKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKTWDTYEMRIHKRY 87
+K LE + A++++ A+ KG VR+PTK L+I+ RKTP EGSKTWD + MRIHKR
Sbjct: 5 IKSLEKMCADLVRGAKEKNPKVKGLVRMPTKTLRITIRKTPCDEGSKTWDCFWMRIHKRL 64
Query: 88 IDLEAPAHIVKRITQITIEPGVDVEVIIA 116
IDL++ + IVK+IT I IEPGV+V+ IIA
Sbjct: 65 IDLQSLSEIVKQITSINIEPGVEVDAIIA 93
>Hs22045664 [J] KOG0900 40S ribosomal protein S20
Length = 180
Score = 97.8 bits (242), Expect = 2e-21
Identities = 46/83 (55%), Positives = 64/83 (76%)
Query: 34 VSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKTWDTYEMRIHKRYIDLEAP 93
V A++++ A+ L KGPV +P+K L+I+TRKTP GEGS TWD ++M IHKR IDL +P
Sbjct: 96 VCADLVRGAQEKNLKVKGPVGMPSKTLRITTRKTPCGEGSTTWDGFQMGIHKRLIDLHSP 155
Query: 94 AHIVKRITQITIEPGVDVEVIIA 116
+ IV+++T I+ EPGV+VEV IA
Sbjct: 156 SEIVRQMTSISNEPGVEVEVTIA 178
>Hs20542897 [J] KOG0900 40S ribosomal protein S20
Length = 459
Score = 61.2 bits (147), Expect = 2e-10
Identities = 25/47 (53%), Positives = 37/47 (78%)
Query: 55 LPTKVLKISTRKTPNGEGSKTWDTYEMRIHKRYIDLEAPAHIVKRIT 101
+PTK L+ +TR+TP GEGSKTW+ ++MRIHK+ D +P+ I K++T
Sbjct: 1 MPTKTLRTTTRETPFGEGSKTWNRFQMRIHKQLTDSRSPSEIAKQMT 47
>ECU11g0720 [J] KOG0900 40S ribosomal protein S20
Length = 120
Score = 52.0 bits (123), Expect = 1e-07
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 18 KIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKTWD 77
K+ I++ S + KQ+ V + +TF + LP KV I+T + P+G+G+K W
Sbjct: 20 KVCIDMASLEEKQINKVCREFYEYGKTFIDDLQRETVLPKKVESITTLRNPSGQGTKKWS 79
Query: 78 TYEMRIHKRYIDLEAPAHIVKRITQITIE-PGVDVEVII 115
Y+M +H R LEA ++++ Q P V++ + I
Sbjct: 80 RYKMIVHLRNFYLEATHQQLEKVVQFLRNFPHVEINLSI 118
>At3g13120 [J] KOG0900 40S ribosomal protein S20
Length = 191
Score = 48.1 bits (113), Expect = 2e-06
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 18 KIRINLTSTKVKQLENVSANIIKNAETFKLVKKGPVRLPTKVLKISTRKTPNGEGSKTWD 77
KIRI L S V +E+ I+ A GPV LPTK K+P+ +
Sbjct: 94 KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 153
Query: 78 TYEMRIHKRYIDLEAP-AHIVKRITQITIEPGVDVEV 113
+E+R H+R ID+ P A + + Q+ + GVDVEV
Sbjct: 154 -FEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEV 189
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,567,615
Number of Sequences: 60738
Number of extensions: 206130
Number of successful extensions: 512
Number of sequences better than 1.0e-05: 17
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 17
length of query: 117
length of database: 30,389,216
effective HSP length: 93
effective length of query: 24
effective length of database: 24,740,582
effective search space: 593773968
effective search space used: 593773968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)