ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI6901   good          U     KOG3480  Intracellular trafficking, secretion, and vesicular transport  Mitochondrial import inner membrane translocase, subunits TIM10/TIM12

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI6901 2404449  2404715 89   
         (89 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YHR005c-a [U] KOG3480 Mitochondrial import inner membrane transl...   121   2e-28
SPAC222.03c [U] KOG3480 Mitochondrial import inner membrane tran...    80   5e-16
Hs6912708 [U] KOG3480 Mitochondrial import inner membrane transl...    70   4e-13
7291327 [U] KOG3480 Mitochondrial import inner membrane transloc...    69   1e-12
CE28800 [U] KOG3480 Mitochondrial import inner membrane transloc...    65   1e-11
At2g29530 [U] KOG3480 Mitochondrial import inner membrane transl...    64   3e-11

>YHR005c-a [U] KOG3480 Mitochondrial import inner membrane translocase
          subunits TIM10/TIM12
          Length = 93

 Score =  121 bits (303), Expect = 2e-28
 Identities = 56/73 (76%), Positives = 68/73 (92%), Gaps = 1/73 (1%)

Query: 18 AAEAELDLVTDMFNKLVDNCHKKCIEQIYNDGQLNKNESTCIDRCVAKYFETNVKVGENM 77
          AAEAELDLVTDMFNKLV+NC+KKCI   Y++G+LNKNES+C+DRCVAKYFETNV+VGENM
Sbjct: 21 AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENM 80

Query: 78 QQLGQAF-SPGKF 89
          Q++GQ+F + GKF
Sbjct: 81 QKMGQSFNAAGKF 93


>SPAC222.03c [U] KOG3480 Mitochondrial import inner membrane translocase
          subunits TIM10/TIM12
          Length = 89

 Score = 80.1 bits (196), Expect = 5e-16
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query: 19 AEAELDLVTDMFNKLVDNCHKKCIEQIYNDGQLNKNESTCIDRCVAKYFETNVKVGENMQ 78
          AE E+++++D+FN+LV  CHKKCI   Y +  L K ES CIDRCV+KYFE N  + ++MQ
Sbjct: 21 AEQEVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSLSQHMQ 80

Query: 79 QLGQ 82
          + GQ
Sbjct: 81 KRGQ 84


>Hs6912708 [U] KOG3480 Mitochondrial import inner membrane translocase
          subunits TIM10/TIM12
          Length = 90

 Score = 70.5 bits (171), Expect = 4e-13
 Identities = 25/63 (39%), Positives = 46/63 (72%)

Query: 18 AAEAELDLVTDMFNKLVDNCHKKCIEQIYNDGQLNKNESTCIDRCVAKYFETNVKVGENM 77
          AAE E++++ DM+N++   CH+KC+   Y + +L+K ES C+DRCV+KY + + ++G+ +
Sbjct: 10 AAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKL 69

Query: 78 QQL 80
           +L
Sbjct: 70 TEL 72


>7291327 [U] KOG3480 Mitochondrial import inner membrane translocase
          subunits TIM10/TIM12
          Length = 92

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 25/58 (43%), Positives = 43/58 (74%)

Query: 20 EAELDLVTDMFNKLVDNCHKKCIEQIYNDGQLNKNESTCIDRCVAKYFETNVKVGENM 77
          E E+++++D++N++ + CHKKCI   Y++ +L K E  CIDRCVAKY + + K+G+ +
Sbjct: 19 EMEIEMMSDLYNRMTNACHKKCIPPRYSESELGKGEMVCIDRCVAKYLDIHEKIGKKL 76


>CE28800 [U] KOG3480 Mitochondrial import inner membrane translocase
          subunits TIM10/TIM12
          Length = 86

 Score = 65.5 bits (158), Expect = 1e-11
 Identities = 23/64 (35%), Positives = 44/64 (67%)

Query: 19 AEAELDLVTDMFNKLVDNCHKKCIEQIYNDGQLNKNESTCIDRCVAKYFETNVKVGENMQ 78
          AE E+++++DM+ ++ ++C  KCI   + + +L K E+ C+DRCVAKY + + K+G+ + 
Sbjct: 11 AELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEKLGKRLT 70

Query: 79 QLGQ 82
           + Q
Sbjct: 71 SMSQ 74


>At2g29530 [U] KOG3480 Mitochondrial import inner membrane translocase
          subunits TIM10/TIM12
          Length = 83

 Score = 64.3 bits (155), Expect = 3e-11
 Identities = 24/57 (42%), Positives = 40/57 (70%)

Query: 19 AEAELDLVTDMFNKLVDNCHKKCIEQIYNDGQLNKNESTCIDRCVAKYFETNVKVGE 75
          A+ E++   ++FNKL   C  KC+++ Y + +LN  E++CIDRCV+KY++ N  VG+
Sbjct: 18 AQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDRCVSKYWQVNGMVGQ 74


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,474,238
Number of Sequences: 60738
Number of extensions: 150476
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 6
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 6
length of query: 89
length of database: 30,389,216
effective HSP length: 65
effective length of query: 24
effective length of database: 26,441,246
effective search space: 634589904
effective search space used: 634589904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)