ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI6914 good L KOG3388 Replication, recombination and repair Predicted transcription regulator/nuclease, contains ParB domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI6914 2408281 2408676 132
(132 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKL086w [L] KOG3388 Predicted transcription regulator/nuclease c... 129 1e-30
SPBC106.02c [L] KOG3388 Predicted transcription regulator/nuclea... 82 1e-16
7293396 [L] KOG3388 Predicted transcription regulator/nuclease c... 55 2e-08
>YKL086w [L] KOG3388 Predicted transcription regulator/nuclease contains
ParB domain
Length = 127
Score = 129 bits (324), Expect = 1e-30
Identities = 67/131 (51%), Positives = 88/131 (67%), Gaps = 6/131 (4%)
Query: 1 MSMQTSLCKEKNIPLSQIIRPIQPVLDHAKIDAMISTFKGTPKASRTMTESQAAERVATL 60
MS+Q++ K IPLS+I RP+ PVLD KIDAM++T KG P AS+T + QA +
Sbjct: 1 MSLQSNSVKPTEIPLSEIRRPLAPVLDPQKIDAMVATMKGIPTASKTCSLEQAEAAASA- 59
Query: 61 PADQRLPPVDVAAVRYPETGETRYFAFGGCHRLQAYDKLASESQENDIAVRCRLMPMTPK 120
LPPVDV VR G+T Y+AFGGCHRLQAYD+ A E+Q VRCR++P TP+
Sbjct: 60 ---GELPPVDVLGVRVK--GQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPR 114
Query: 121 QLKLYVGGSGD 131
Q+++Y+G S D
Sbjct: 115 QIRMYLGSSLD 125
>SPBC106.02c [L] KOG3388 Predicted transcription regulator/nuclease contains
ParB domain
Length = 124
Score = 82.4 bits (202), Expect = 1e-16
Identities = 49/120 (40%), Positives = 74/120 (60%), Gaps = 17/120 (14%)
Query: 13 IPLSQIIRPIQPVLDHAKIDAMISTFKG-TPKASRTMTESQAAERVATLPADQRLPPVDV 71
+ +S++IRPI PVLD K+++M+ T G TP AS +T L A + LPPVDV
Sbjct: 15 LDMSELIRPIPPVLDMNKVNSMMETMTGKTPPASCGLTSED-------LEAGE-LPPVDV 66
Query: 72 AAVRYPETGETRYFAFGGCHRLQAYDKLASESQENDIAVRCRLMPMTPKQLKLYVGGSGD 131
+ + ++G+ YFAFGGCHRL+A+D+ + VRC+L+ +P L+LY+G S +
Sbjct: 67 --LTFKKSGKPYYFAFGGCHRLRAHDEAGRKK------VRCKLVNCSPNTLRLYLGASAN 118
>7293396 [L] KOG3388 Predicted transcription regulator/nuclease contains
ParB domain
Length = 162
Score = 55.1 bits (131), Expect = 2e-08
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 26/117 (22%)
Query: 13 IPLSQIIRPIQPVLDHAKIDAMISTFKGTPKASRTMTESQAAERVATLPADQRLPPVDVA 72
+P+S I RPI VLD K+ +++ T K ++ +PP+D+
Sbjct: 66 VPMSVIQRPIPSVLDEQKVQSLMETIKNET-------------------SEDEVPPIDLL 106
Query: 73 AVRYPETGETRYFAFGGCHRLQAYDKLASESQENDIAVRCRLMPMTPKQLKLYVGGS 129
+ E G+ YF+FGGCHR +AY +L + ++ +L+ T L Y+G S
Sbjct: 107 WISGSEGGDY-YFSFGGCHRFEAYKRLQRPT------IKAKLVKSTLGDLYHYMGSS 156
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,629,597
Number of Sequences: 60738
Number of extensions: 264886
Number of successful extensions: 660
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 3
length of query: 132
length of database: 30,389,216
effective HSP length: 94
effective length of query: 38
effective length of database: 24,679,844
effective search space: 937834072
effective search space used: 937834072
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)