ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI6929   suspect: LH   O     KOG2699  Posttranslational modification, protein turnover, chaperones   Predicted ubiquitin regulatory protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI6929 2412582  2413238 219  
         (219 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YMR067c [O] KOG2699 Predicted ubiquitin regulatory protein             82   6e-16

>YMR067c [O] KOG2699 Predicted ubiquitin regulatory protein
          Length = 416

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 61/220 (27%), Positives = 98/220 (43%), Gaps = 16/220 (7%)

Query: 8   HHPKVILPRDQ--TSVNGSDVNDANYNLTVDHALRYQKLLANRAGTNLATGPLMTKRLRE 65
           H P V LP D+    +     ++ +Y LTV+ A +YQK+L+++AGT    GP++TKRLRE
Sbjct: 205 HKPSVFLPSDEPLAVIKDQIEDEEDYELTVEQAKKYQKMLSSKAGT--LGGPILTKRLRE 262

Query: 66  QKEGXXXXXXXXXXXIDYLYIRARLPDRTALDYQLSVTSTLHSLYETIRGSLIETAAAQV 125
           Q              I    +R + PDR+ +         + ++Y  +   LI+      
Sbjct: 263 Q---SANNLPKKNKAISECLLRVKFPDRSHIQIAFKPNEDMRTVYNVVSQFLID-ENMPF 318

Query: 126 SVSLSSPFIXXXXXXXXXXXXAGFSKKTLVLVEV-GDCSPPYLKPHLLANXXXXXXXXXX 184
           +++ S PF               F  KT++L E   + + P +K HLL +          
Sbjct: 319 TLNQSHPFKPLAKDDKKLLDDLEFGSKTMLLFETNSNSNGPLIKAHLLED--AQKITHET 376

Query: 185 XXXXXXNSGGESIAEGPKPT-----RKLTKAPKWLKLSKK 219
                 N+  +S  +GP        + L + PKW+KLSKK
Sbjct: 377 RTTPSVNTINKSNPQGPSDNATSIKKTLNRVPKWMKLSKK 416


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.313    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,102,330
Number of Sequences: 60738
Number of extensions: 294091
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 1
length of query: 219
length of database: 30,389,216
effective HSP length: 102
effective length of query: 117
effective length of database: 24,193,940
effective search space: 2830690980
effective search space used: 2830690980
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)