ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI6939.1   suspect: LH  T     KOG3512   Signal transduction mechanisms                                 Netrin, axonal chemotropic factor

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI6939.1 2416254  2416601 116  
         (116 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CE04538 [T] KOG3512 Netrin axonal chemotropic factor                   27   6.0  

>CE04538 [T] KOG3512 Netrin axonal chemotropic factor
          Length = 612

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 48  CRFSSLLFCLSATVFSTTCLRSRHST 73
           CRF + LF LS       CL  RH+T
Sbjct: 356 CRFDAELFRLSGNRSGGVCLNCRHNT 381


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.341    0.142    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,194,425
Number of Sequences: 60738
Number of extensions: 73546
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 1
length of query: 116
length of database: 30,389,216
effective HSP length: 92
effective length of query: 24
effective length of database: 24,801,320
effective search space: 595231680
effective search space used: 595231680
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)