ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI7001 good A KOG1914 RNA processing and modification mRNA cleavage and polyadenylation factor I complex, subunit RNA14
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI7001 2438400 2436418 -661
(661 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR061w [A] KOG1914 mRNA cleavage and polyadenylation factor I c... 603 e-172
SPAC6F12.17 [A] KOG1914 mRNA cleavage and polyadenylation factor... 242 1e-63
Hs4557495 [A] KOG1914 mRNA cleavage and polyadenylation factor I... 205 2e-52
7288899 [A] KOG1914 mRNA cleavage and polyadenylation factor I c... 180 7e-45
CE03277 [A] KOG1914 mRNA cleavage and polyadenylation factor I c... 164 4e-40
At1g17760 [A] KOG1914 mRNA cleavage and polyadenylation factor I... 139 1e-32
ECU02g0930 [A] KOG1914 mRNA cleavage and polyadenylation factor ... 84 9e-16
>YMR061w [A] KOG1914 mRNA cleavage and polyadenylation factor I complex
subunit RNA14
Length = 677
Score = 603 bits (1554), Expect = e-172
Identities = 302/648 (46%), Positives = 441/648 (67%), Gaps = 32/648 (4%)
Query: 36 KLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK 95
+L + I++ PT+I Y +L+++ + + + +V E +++ H+ FP + W ++L E +
Sbjct: 30 RLRERIKDNPTNILSYFQLIQYLETQESYAKVREVYEQFHNTFPFYSPAWTLQLKGELAR 89
Query: 96 MEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV 155
E +E +LA+CLS +L NNDLSLW +Y+ Y+R+KN++ITGG+EAR ++++AFQ+V
Sbjct: 90 DE---FETVEKILAQCLSGKLENNDLSLWSTYLDYIRRKNNLITGGQEARAVIVKAFQLV 146
Query: 156 VDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQ 215
+ KCAIFEPKS FWNEYL+FLE WKP NK+EEQQR+ +R+ YK +LC P D LE MW
Sbjct: 147 MQKCAIFEPKSSSFWNEYLNFLEQWKPFNKWEEQQRIDMLREFYKKMLCVPFDNLEKMWN 206
Query: 216 RYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 275
RYTQWEQ++N LTAR+ IGELSA+YM ARSLYQ+WLN+T GLKR PI L A + N+P+
Sbjct: 207 RYTQWEQEINSLTARKFIGELSAEYMKARSLYQEWLNVTNGLKRASPINLRTANKKNIPQ 266
Query: 276 PNEYD--VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMAN 333
P D +QQL IWL WI+WE +NKL LS+D+ R++YVY Q Q++ F+ E+W++ +
Sbjct: 267 PGTSDSNIQQLQIWLNWIKWERENKLMLSEDMLSQRISYVYKQGIQYMIFSAEMWYDYSM 326
Query: 334 YQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIET-------TILSC 386
Y E + ++ L P+S L F LSE YEL+ + T+LS
Sbjct: 327 YISENSDRQNILYTALLAN----PDSPSLTFKLSECYELDNDSESVSNCFDKCTQTLLSQ 382
Query: 387 IDRIHLDLAALMEDDPT--NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 444
+I D+ + ED+ T + + + + KLT+V+CVYMNTMKRI GL+A+R +FGKCR+
Sbjct: 383 YKKIASDVNS-GEDNNTEYEQELLYKQREKLTFVFCVYMNTMKRISGLSAARTVFGKCRK 441
Query: 445 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 504
LK+++T D+Y+ENAY+E+ D KTA KVLELGLKYF DG YINKYLDFLI++N++SQ
Sbjct: 442 LKRILTHDVYVENAYLEFQNQNDYKTAFKVLELGLKYFQNDGVYINKYLDFLIFLNKDSQ 501
Query: 505 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTN 564
+K+LFE+S++K+ D LK I++K+I +ESK G+LN+V +LEKRFFE+FP+ N +E FT+
Sbjct: 502 IKTLFETSVEKVQDLTQLKEIYKKMISYESKFGNLNNVYSLEKRFFERFPQENLIEVFTS 561
Query: 565 KYKVLDVNYLQRLELDYMVRDVMPEAIALDRG----------SNNLKRTMREEEDGQAF- 613
+Y++ + N +++LEL YM + + G S++ KR M E + F
Sbjct: 562 RYQIQNSNLIKKLELTYMYNEEEDSYFSSGNGDGHHGSYNMSSSDRKRLMEETGNNGNFS 621
Query: 614 -KKFKANEDPIPPEIVELLKVLPKRQYFKVTIFEAHAFSEFLSDKVTI 660
KKFK + + +P E+++LL V+PKRQYF + +A FL+D+V I
Sbjct: 622 NKKFKRDSE-LPTEVLDLLSVIPKRQYFNTNLLDAQKLVNFLNDQVEI 668
>SPAC6F12.17 [A] KOG1914 mRNA cleavage and polyadenylation factor I complex
subunit RNA14
Length = 733
Score = 242 bits (618), Expect = 1e-63
Identities = 153/559 (27%), Positives = 297/559 (52%), Gaps = 39/559 (6%)
Query: 31 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLS 90
+D++G+L D I+E P DI + L++ + S + +++ ET++++ FP + +W +S
Sbjct: 54 NDLVGQLRDKIQENPNDISSWYALVEEYGSKGKHEELRETYEQMLRPFPYVPRVWVDYIS 113
Query: 91 LEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQ 150
E + D +E + +RCL K L + LW Y++Y+R+ N G ++R+ + Q
Sbjct: 114 SE---LAFNDFHAVELLFSRCLVKVLS---VDLWTLYLSYIRRINP--DGEGQSRSTITQ 165
Query: 151 AFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCL 210
A++ V++ + + S W+E++ FL + +E+QQ++ ++R++Y+ + P+ +
Sbjct: 166 AYEFVINTIGV-DILSGPIWSEFVDFLRSGPANSTWEQQQKLDHVRRIYQRAITTPIHNI 224
Query: 211 ESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 270
E +W+ Y +E VN+ TAR+ + E S YM AR+ ++ N+T+GL+ + E
Sbjct: 225 EKLWRDYDAFENSVNRATARKFVAEKSPVYMAARAAMRELSNLTEGLR-----VYDFTFE 279
Query: 271 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELS-DDLHKARMTYVYMQAAQHVCFAPEIWF 329
K + W+ WI+WE + L+L + + R+ Y + QA +V P+IW
Sbjct: 280 RKYTKVERIAYSR---WMNWIKWEQSDPLDLQHGTMLQNRIAYAFEQAMLYVPLCPQIWL 336
Query: 330 NMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 389
+ +Y + + + + ++ G + P++ VL +E E N + EI +T S I
Sbjct: 337 DGFSYFLSISDEQRAL-QTIRRGMRYCPSNFVLHVRYAEHEEANNRTSEIRSTYESLIAA 395
Query: 390 IHLDLAAL-MEDDPTNESAIN-------------QLKSKLTYVY----CVYMNTMKRIQG 431
+ +++ L + ++ES+ + + KS+L Y C +N ++R +G
Sbjct: 396 LAREISQLDSKASSSSESSTDGNPQEKKLPEHLVKRKSRLVRQYSLAWCCLINAIRRTEG 455
Query: 432 LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINK 491
+ A+R IF K R+ + +IY+ +A +E+H S+D A ++ ELG+++F Y+ K
Sbjct: 456 VKAARAIFTKARK-APYQSHEIYIASAMMEHHCSRDPVIASRIFELGMRHFGDVPAYVYK 514
Query: 492 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 551
YL +LI +N+E+ ++LFE +I +I+ K I+QK + +ES G LN+ L +R
Sbjct: 515 YLSYLIAINDETNARALFEKAIPRIAADE-AKPIYQKWLDYESNYGDLNAAIALSQRMAV 573
Query: 552 KFPEVNKLEEFTNKYKVLD 570
+P+ + F ++Y + D
Sbjct: 574 VYPQESTQAIFLSRYGLKD 592
>Hs4557495 [A] KOG1914 mRNA cleavage and polyadenylation factor I complex
subunit RNA14
Length = 717
Score = 205 bits (522), Expect = 2e-52
Identities = 151/557 (27%), Positives = 267/557 (47%), Gaps = 60/557 (10%)
Query: 34 IGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEF 93
+ K +EE P D+ + L++ + + + +T+++L +FP W + + E
Sbjct: 18 VKKAEKKLEENPYDLDAWSILIREAQN-QPIDKARKTYERLVAQFPSSGRFWKLYIEAEI 76
Query: 94 DKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQ 153
K + D +E + RCL K L + LW Y++YVR+ + +E + QA+
Sbjct: 77 -KAKNYDK--VEKLFQRCLMKVL---HIDLWKCYLSYVRETKGKLPSYKEK---MAQAYD 127
Query: 154 VVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESM 213
+DK + E S Q W +Y++FL+ + V + E QR+ +R++Y+ PM +E +
Sbjct: 128 FALDKIGM-EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 186
Query: 214 WQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 273
W+ Y ++E+ +N A++ I + S YMNAR + +++ + KGL RN P S
Sbjct: 187 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAP--------SVP 238
Query: 274 PKPNEYDVQQLLIWLEWIRWESDNKLELSDD-LHKARMTYVYMQAAQHVCFAPEIWFNMA 332
P+ + QQ+ +W ++I+WE N L D L R+ + Y Q + P+IW+ A
Sbjct: 239 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAA 298
Query: 333 NY----------QGEKNTDSTVITKYLKLGQQCI----PNSAVLAFSLSEQYELNTKIPE 378
Y +G+ N + + ++ I + +L F+ ++ E K +
Sbjct: 299 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 358
Query: 379 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 438
+ + I+ L A+ + DP T VY YM +R +G+ + R I
Sbjct: 359 VHS--------IYNRLLAIEDIDP-------------TLVYIQYMKFARRAEGIKSGRMI 397
Query: 439 FGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 498
F K R + +Y+ A +EY+ SKD A K+ ELGLK + EY+ Y+D+L +
Sbjct: 398 FKKAREDTR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 456
Query: 499 VNEESQVKSLFESSIDKIS-DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 557
+NE++ + LFE + S I+ + + FES +G L S+ +EKR F F E
Sbjct: 457 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEY 516
Query: 558 KLEE---FTNKYKVLDV 571
+ +E ++YK +D+
Sbjct: 517 EGKETALLVDRYKFMDL 533
>7288899 [A] KOG1914 mRNA cleavage and polyadenylation factor I complex
subunit RNA14
Length = 733
Score = 180 bits (456), Expect = 7e-45
Identities = 140/560 (25%), Positives = 264/560 (47%), Gaps = 68/560 (12%)
Query: 36 KLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK 95
+ ++E +P DI + +++ + +V ++ L + FP A W + + +E
Sbjct: 21 RAQQVVELRPYDIESWSVMIRE-AQTRPIHEVRSLYESLVNVFPTTARYWKLYIEME--- 76
Query: 96 MEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV 155
M +E + RCL K L ++ LW Y+TYV++ ++ +E + QA+
Sbjct: 77 MRSRYYERVEKLFQRCLVKIL---NIDLWKLYLTYVKETKSGLSTHKEK---MAQAYDFA 130
Query: 156 VDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQ 215
++K + + S W +Y++FL + V + E Q++ +R++Y+ + P+ +E +W+
Sbjct: 131 LEKIGM-DLHSFSIWQDYIYFLRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWK 189
Query: 216 RYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 275
Y +EQ++N + + + E S YMNAR + ++ TKGL RNLP P
Sbjct: 190 DYIAFEQNINPIISEKMSLERSKDYMNARRVAKELEYHTKGLNRNLPAV--------PPT 241
Query: 276 PNEYDVQQLLIWLEWIRWESDNKLELSDD-LHKARMTYVYMQAAQHVCFAPEIWFNMANY 334
+ +V+Q+ +W +I +E N L D L R+ + Q + P +W + +
Sbjct: 242 LTKEEVKQVELWKRFITYEKSNPLRTEDTALVTRRVMFATEQCLLVLTHHPAVWHQASQF 301
Query: 335 QGEKNTDSTVITKYLKL------GQQC-----------IPNSAVLAFSLSEQYELNTKIP 377
+T + V+T+ + +C + +A+L F+ ++ E K
Sbjct: 302 ---LDTSARVLTEKGDVQAAKIFADECANILERSINGVLNRNALLYFAYADFEEGRLKYE 358
Query: 378 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 437
++ T ++ L L + DP T VY YM +R +G+ ++R
Sbjct: 359 KVHT--------MYNKLLQLPDIDP-------------TLVYVQYMKFARRAEGIKSARS 397
Query: 438 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI 497
IF K R + I++ A +EY+ SKD + A ++ ELGLK F EY+ Y+D+L
Sbjct: 398 IFKKAREDVR-SRYHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMCYIDYLS 456
Query: 498 YVNEESQVKSLFESSIDKISDS-HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 556
++NE++ + LFE + S H ++ + + FES +G L+S+ +E+R F +
Sbjct: 457 HLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLSSIVKVERRRSAVFENL 516
Query: 557 NKLE-----EFTNKYKVLDV 571
+ E + ++YK LD+
Sbjct: 517 KEYEGKETAQLVDRYKFLDL 536
>CE03277 [A] KOG1914 mRNA cleavage and polyadenylation factor I complex
subunit RNA14
Length = 735
Score = 164 bits (415), Expect = 4e-40
Identities = 142/567 (25%), Positives = 257/567 (45%), Gaps = 72/567 (12%)
Query: 41 IEEQPTDIFLYVKLLKHHVS--LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEE 98
IE P D+ + LL+ H S + Q + YE+ K +FP W + E +
Sbjct: 13 IETNPFDVDAWNLLLREHQSRPIDQERDFYESLVK---QFPNSGRYWKAYIEHE---LRS 66
Query: 99 LDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK 158
+ +E + +RCL L ++ LW YI YV + ++ R + +A+ ++K
Sbjct: 67 KNFENVEKLFSRCLVSVL---NIDLWKCYIHYVFETKG---QRDQYREEMAKAYDFALEK 120
Query: 159 CAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYT 218
+ + ++ + EY+ FL+ V ++ E QR+ +RK+Y+ L PM LE +W Y
Sbjct: 121 VGM-DVQAYSIFTEYIAFLKKVPAVGQYAENQRITAVRKIYQKALATPMHNLELIWNDYC 179
Query: 219 QWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 278
+E+ +N A + I E +Y NAR + +D +T+G LN+ S PK
Sbjct: 180 TYEKAINITLAEKLIAERGKEYQNARRVEKDLQQMTRG--------LNRQAVSVPPKGTA 231
Query: 279 YDVQQLLIWLEWIRWESDNKLELSD-DLHKARMTYVYMQAAQHVCFAPEIWFNMANY--- 334
+ +Q+ +W I WE N L+ + H R+ Y Y Q+ + + P+IW+ A +
Sbjct: 232 TEFKQVELWKNLIAWEKTNPLQTEEYGQHARRVVYTYEQSLLCLGYYPDIWYEAAMFLQE 291
Query: 335 -------QGEKNTDSTVITKYLKLGQQCI----PNSAVLAFSLSEQYELNTKIPEIETTI 383
+G+ + + + L ++ I S +L F+ ++ E + + ++
Sbjct: 292 ASHTLDEKGDVKMAQVLKLETISLYERAITGLMKESKLLYFAYADFQEEHKQFEAVK--- 348
Query: 384 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 443
+ DR+ I + LTYV M ++R +G +R +F + R
Sbjct: 349 -NIYDRL---------------LGIEHINPTLTYVQ--LMRFIRRSEGPNNARLVFKRAR 390
Query: 444 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 503
K+ +++ A +EY+ KD + A +V +LGLK + + E+ Y DFL +NE++
Sbjct: 391 EDKR-TGYQVFVAAALLEYNCMKDKEVAIRVFKLGLKKYENEPEFGLAYADFLSNLNEDN 449
Query: 504 QVKSLFESSI--DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 561
+ +FE + K+ ++ I+ + + FES VG L S+ +EKR + E K +
Sbjct: 450 NTRVVFERILTSSKLPADKSIR-IWDRFLDFESCVGDLASILKVEKRRKTAYEEAQKDQT 508
Query: 562 FTNKYKVLDVNYLQRLELDYMVRDVMP 588
+ V+D Y D+MP
Sbjct: 509 MNHSMLVID---------RYKFMDLMP 526
>At1g17760 [A] KOG1914 mRNA cleavage and polyadenylation factor I complex
subunit RNA14
Length = 722
Score = 139 bits (350), Expect = 1e-32
Identities = 122/555 (21%), Positives = 236/555 (41%), Gaps = 81/555 (14%)
Query: 58 HVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELG 117
H + Q +YE +L +P A W + + + DA + + +RCL L
Sbjct: 19 HSPIAQATPIYE---QLLSLYPTSARFWKQYVEAQMAVNND-DAT--KQIFSRCLLTCL- 71
Query: 118 NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFL 177
+ LW YI ++RK D G E + +AF+ +++ + S W EY+ FL
Sbjct: 72 --QVPLWQCYIRFIRKVYD--KKGAEGQEETTKAFEFMLNYIGT-DIASGPIWTEYIAFL 126
Query: 178 EHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELS 237
+ +N E+ R +RK+Y + P +E +W+ Y +E VN+ A+ + E
Sbjct: 127 KSLPALNLNEDLHRKTALRKVYHRAILTPTHHVEQLWKDYENFENTVNRQLAKGLVNEYQ 186
Query: 238 AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDN 297
++ +AR++Y++ + + N+ P + Q + W +++ +E N
Sbjct: 187 PKFNSARAVYRERKKYIEEIDWNMLAV--------PPTGTSKEETQWVAWKKFLSFEKGN 238
Query: 298 KLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP 357
+ R+ Y Y Q + P++W++ A + + + I K + + IP
Sbjct: 239 PQRIDTASSTKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAAI-KVFQRALKAIP 297
Query: 358 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 417
+S +L ++ +E E I
Sbjct: 298 DSEMLKYAFAEMEESRGAIQ---------------------------------------- 317
Query: 418 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLEL 477
Y+ ++R +G+ A+RK F R+ T +Y+ A + + I K+ K A + E
Sbjct: 318 ----YLRFLRRAEGVEAARKYFLDARK-SPSCTYHVYIAFATMAFCIDKEPKVAHNIFEE 372
Query: 478 GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID--KISDSHLLKMIFQKVIFFESK 535
GLK + ++ YI KY DFL +N++ +++LFE ++ + DS ++++ I FE
Sbjct: 373 GLKLYMSEPVYILKYADFLTRLNDDRNIRALFERALSTLPVEDS---AEVWKRFIQFEQT 429
Query: 536 VGSLNSVRTLEKRFFEKF---------PEVNKLEEFTNKYKVLDVNYLQRLELDYMVR-D 585
G L S+ +E+R E P + L++ ++Y +D+ +LD++ R +
Sbjct: 430 YGDLASILKVEQRMKEALSGKGEEGSSPPESSLQDVVSRYSYMDLWPCTSNDLDHLARQE 489
Query: 586 VMPEAIALDRGSNNL 600
++ + + G NL
Sbjct: 490 LLVKNLNKKAGKTNL 504
>ECU02g0930 [A] KOG1914 mRNA cleavage and polyadenylation factor I complex
subunit RNA14
Length = 493
Score = 83.6 bits (205), Expect = 9e-16
Identities = 94/450 (20%), Positives = 181/450 (39%), Gaps = 76/450 (16%)
Query: 100 DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKC 159
D +E + RCL K +L LW+ YI YVRK + E + F+
Sbjct: 29 DYRSLESLFGRCLKKSY---NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFE------ 79
Query: 160 AIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ-RVQYIRKLYKTLLCQPMDCLESMWQRYT 218
+W+ Y + E+ + + K E++Q R++ IR Y L PM L +W+ +
Sbjct: 80 --------NYWDSYGLYKEYIEELGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFE 131
Query: 219 QWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 278
+E ++N++T ++ +G+ + ++ YQ + +G L
Sbjct: 132 NFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL------------- 178
Query: 279 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQ--- 335
I E +N ++L H++RM +++ +A E++F + Y
Sbjct: 179 ------------IDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI 226
Query: 336 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 395
G+K V+ + +++ LS Y L E + + R +
Sbjct: 227 GQKEKAKKVVERGIEMSD---------GMFLSLYYGLVMD----EEAVYGDLKRKYSMGE 273
Query: 396 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 455
A ESA +L + ++N + + +GL RK+F + + V P +++
Sbjct: 274 A--------ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG--NEGVGPHVFI 323
Query: 456 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 515
A+IEY+ + T + GL ++ FL+ + +E ++LF+ ++K
Sbjct: 324 YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK-RLEK 382
Query: 516 ISDSHLLKMIFQKVIFFESKVGSLNSVRTL 545
S ++ +I +E VGS+ R L
Sbjct: 383 TS------RMWDSMIEYEFMVGSMELFREL 406
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,844,755
Number of Sequences: 60738
Number of extensions: 1682068
Number of successful extensions: 4606
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4558
Number of HSP's gapped (non-prelim): 14
length of query: 661
length of database: 30,389,216
effective HSP length: 113
effective length of query: 548
effective length of database: 23,525,822
effective search space: 12892150456
effective search space used: 12892150456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)