ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI7067 good J KOG0650 Translation, ribosomal structure and biogenesis WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI7067 2461876 2464248 791
(791 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR049c [J] KOG0650 WD40 repeat nucleolar protein Bop1 involved ... 1173 0.0
SPBC4F6.13c [J] KOG0650 WD40 repeat nucleolar protein Bop1 invol... 564 e-160
Hs21327667 [J] KOG0650 WD40 repeat nucleolar protein Bop1 involv... 529 e-150
7302708 [J] KOG0650 WD40 repeat nucleolar protein Bop1 involved ... 521 e-147
CE22116 [J] KOG0650 WD40 repeat nucleolar protein Bop1 involved ... 452 e-127
At2g40360 [J] KOG0650 WD40 repeat nucleolar protein Bop1 involve... 450 e-126
YDL145c [U] KOG0292 Vesicle coat complex COPI alpha subunit 57 1e-07
CE29430 [R] KOG0641 WD40 repeat protein 55 4e-07
CE18673 [U] KOG0276 Vesicle coat complex COPI beta' subunit 52 3e-06
>YMR049c [J] KOG0650 WD40 repeat nucleolar protein Bop1 involved in ribosome
biogenesis
Length = 807
Score = 1173 bits (3035), Expect = 0.0
Identities = 568/733 (77%), Positives = 637/733 (86%), Gaps = 11/733 (1%)
Query: 64 NRLLAXXXXXXXXXYNTSDFSEEGDAFSITDKLSNVKLTVIPETSDEGIVRTKYSDGRPR 123
N+LLA Y++S+FS+ D S+TD+LS VKL I + + + +KY+DG R
Sbjct: 81 NKLLAEEEGDGEEDYDSSEFSD--DTTSLTDRLSGVKLQTIVDPN----IYSKYADGSDR 134
Query: 124 ILKSEINPVYDSDDSDAEAKNTIGNIPLSAYDEMPHIGYDINGKRIMRPAKGSALDQLLE 183
I+K EINPVYDSDDSDAE +NTIGNIPLSAYDEMPHIGYDINGKRIMRPAKGSALDQLL+
Sbjct: 135 IIKPEINPVYDSDDSDAETQNTIGNIPLSAYDEMPHIGYDINGKRIMRPAKGSALDQLLD 194
Query: 184 SIELPEGWTGLLDKDSGASXXXXXXXXXXINKLQNNQQTDESVNPYEPLIDWFTRHESVM 243
SIELPEGWTGLLDK+SG+S I+K+Q N+QTD+S+NPYEPLIDWFTRHE VM
Sbjct: 195 SIELPEGWTGLLDKNSGSSLNLTKEELELISKIQRNEQTDDSINPYEPLIDWFTRHEEVM 254
Query: 244 PVTAVPEPKRRFVPSKHEAKRVMKIVKAIREGRIIPPXXXXXXXXXXXQDSHNYDLWGDA 303
P+TAVPEPKRRFVPSK+EAKRVMKIV+AIREGRIIPP +++ YDLWGD+
Sbjct: 255 PLTAVPEPKRRFVPSKNEAKRVMKIVRAIREGRIIPPKKLKEMKEKEKIENYQYDLWGDS 314
Query: 304 EEISEHVMNLRAPKLPPPTNEESYNPPEEYLLTPEEIDAWEKMEPSERERNFVPHKFAAL 363
E ++HVM+LRAPKLPPPTNEESYNPPEEYLL+PEE +AWE E SERERNF+P K++AL
Sbjct: 315 TETNDHVMHLRAPKLPPPTNEESYNPPEEYLLSPEEKEAWENTEYSERERNFIPQKYSAL 374
Query: 364 RKVPGYSESVRERFERSLDLYLAPRVRKNKLNIDPESLIPELPSTKDLRPFPIRCSTVYV 423
RKVPGY ES+RERFERSLDLYLAPRVRKNKLNIDP SLIPELPS KDLRPFPIRCST+Y
Sbjct: 375 RKVPGYGESIRERFERSLDLYLAPRVRKNKLNIDPNSLIPELPSPKDLRPFPIRCSTIYA 434
Query: 424 GHKGKIRTMSIDPTGLWLATGSDDGTVRVWEILTGREVYQVTILNAEENNDDHIDVVEWN 483
GHKGK+RT+SIDP+GLWLATGSDDGTVRVWEILTGREVY+ T+++ EEN D HI+ +EWN
Sbjct: 435 GHKGKVRTLSIDPSGLWLATGSDDGTVRVWEILTGREVYRTTLIDDEENPDYHIECIEWN 494
Query: 484 PDSTTGILAVTAGENIFLLVPPIFGFEIENTGKSKIEYGFGFDTFGNVKKSNLNVNSD-- 541
PD+ GILAV GENI L+VPPIFG++IEN GK+KIE GFG+DTFG VKKSNL VN +
Sbjct: 495 PDANNGILAVAVGENIHLIVPPIFGYDIENNGKTKIEDGFGYDTFGTVKKSNLEVNENGD 554
Query: 542 -DEDDGAES--HAVKKQVAQWNKPTERQAANDICIVITCRKSVKKLSWHRKGDYFVTVQP 598
DED ES +AVKKQVAQWNKP+++Q DICI I+C+K+VKKLSWHRKGDYFVTVQP
Sbjct: 555 GDEDGENESAKNAVKKQVAQWNKPSQKQLEKDICITISCKKTVKKLSWHRKGDYFVTVQP 614
Query: 599 DSGNTSVLIHQLSKHLTQSPFKKSKGIIMDAKFHPFKPQLLVCSQRYVRIYDLSQQVLIK 658
DSGNTSVLIHQ+SKHLTQSPFKKSKGIIMDAKFHPFKPQL VCSQRYVRIYDLSQQ+L+K
Sbjct: 615 DSGNTSVLIHQVSKHLTQSPFKKSKGIIMDAKFHPFKPQLFVCSQRYVRIYDLSQQILVK 674
Query: 659 KLLPGARWLSTIDIHPRGDNLIASSFDKRVLWHDLDLASTPYKTLRYHEKAVRSVSFHKK 718
KLLPGARWLS IDIHPRGDNLIASSFDKRVLWHDLDLASTPYKTLRYHEKAVRSV+FHKK
Sbjct: 675 KLLPGARWLSKIDIHPRGDNLIASSFDKRVLWHDLDLASTPYKTLRYHEKAVRSVNFHKK 734
Query: 719 LPLFCSAADDGNIHVFHATVYDDLMKNPMIVPLKKLTGHKIVNSLGVLDTIWHPREAWLF 778
LPLF SAADDG IHVFHATVYDD+MKNPMIVPLKKLTGHK++NSLGVLD IWHPREAWLF
Sbjct: 735 LPLFSSAADDGTIHVFHATVYDDMMKNPMIVPLKKLTGHKVINSLGVLDAIWHPREAWLF 794
Query: 779 SAGADKTARLWTT 791
SAGAD TARLWTT
Sbjct: 795 SAGADNTARLWTT 807
>SPBC4F6.13c [J] KOG0650 WD40 repeat nucleolar protein Bop1 involved in ribosome
biogenesis
Length = 736
Score = 564 bits (1454), Expect = e-160
Identities = 292/684 (42%), Positives = 412/684 (59%), Gaps = 65/684 (9%)
Query: 128 EINPVYDSDDSDAEAKNTIGNIPLSAYDEMPHIGYDINGKRIMRPAKGSALDQLLESIEL 187
EI+ Y SD S + + P YDE +I YDI+GK+I RPA +ALD L+ SI+
Sbjct: 97 EIDAGYSSDSSTEDVAPGLYESP---YDENLYINYDIDGKKITRPATPAALDSLIASIDK 153
Query: 188 PEGWTGLLDKDSGASXXXXXXXXXXINKLQNNQQTDESVNPYEPLIDWFTRHESVMPVTA 247
+GWTG++D +G + +L ++ DE+ +PY D+FT P+++
Sbjct: 154 DKGWTGIVDPMTGKPVNLTTEELGLLKRLAQSEIPDENFDPYPDYDDFFTNTVRETPLSS 213
Query: 248 VPEPKRRFVPSKHEAKRVMKIVKAIREGRIIPPXXXXXXXXXXXQDSHNYDLWGDAEEIS 307
PEPKRRF PSKHE KR++++ AIR+GRI+ + ++DLW D ++ +
Sbjct: 214 APEPKRRFAPSKHEQKRILQLAYAIRKGRILTSEQRAERERESQSNYADHDLWADDDQAT 273
Query: 308 EHVMNLR---APKLPPPTNEESYNPPEEYLLTPEEIDAWEKMEPSERERNFVPHKFAALR 364
+ L APKLPPP++EESYNPPEEYL ++ + P K+ +LR
Sbjct: 274 VNQRKLDYAPAPKLPPPSHEESYNPPEEYL----------------KQSSDFPKKYKSLR 317
Query: 365 KVPGYSESVRERFERSLDLYLAPRVRKNKLNIDPESLIPELPSTKDLRPFPIRCSTVYVG 424
VP YS ++E+FER LDLYLAPRVR+ KLNIDPESL+P+LP+ +LRPFP RC+ V++G
Sbjct: 318 VVPAYSNLIKEKFERCLDLYLAPRVRRTKLNIDPESLLPKLPTPSELRPFPTRCTNVFIG 377
Query: 425 HKGKIRTMSIDPTGLWLATGSDDGTVRVWEILTGREVYQVTI---LNAEENNDDH----- 476
HKG++R +S+ +G WLA+G DDG +R+WE++TGR V++ ++ NA + D
Sbjct: 378 HKGRVRCLSVHVSGNWLASGGDDGVLRIWEVMTGRCVWKCSLDSFGNAHNIDSDEDAVNE 437
Query: 477 ----------IDVVEWNPDSTTGILAVTAGENIFLLVPPIFGFEIENTGKSKIEYGFGFD 526
I + W P S + +LAV E ++ + PPIF E K +
Sbjct: 438 SLSHSTKSSIIQSLAWGPLSDSPVLAVAVDETVYFITPPIFSDEQIEASK---------E 488
Query: 527 TFGNVKKSNLNVNSDDEDDGAESHAVKKQVAQWNKPTERQAANDICIVITCRKSVKKLSW 586
F + ES A+ ++ A K + + + ++ S+K LSW
Sbjct: 489 LFTSAPYQ-------------ESSAIWRRGA---KQSLQLHGGIVHATVSTPSSIKSLSW 532
Query: 587 HRKGDYFVTVQPDSGNTSVLIHQLSKHLTQSPFKKSKGIIMDAKFHPFKPQLLVCSQRYV 646
HR+GDY T P S + +VLIHQLS+ +QSPF KSKG + FHP P LLV +QRYV
Sbjct: 533 HRRGDYLATSSPTSSSQAVLIHQLSRGASQSPFSKSKGSVQAVTFHPTMPYLLVATQRYV 592
Query: 647 RIYDLSQQVLIKKLLPGARWLSTIDIHPRGDNLIASSFDKRVLWHDLDLASTPYKTLRYH 706
RIY+L +Q L+K LL G +W+S++ +H GD++I S+DKR+ W DLD +S PYK LRYH
Sbjct: 593 RIYNLVKQELVKTLLTGVKWVSSLSVHSSGDHVIIGSYDKRLCWFDLDFSSKPYKNLRYH 652
Query: 707 EKAVRSVSFHKKLPLFCSAADDGNIHVFHATVYDDLMKNPMIVPLKKLTGHKIVNSLGVL 766
+A+R VS+H LPLFCS +DDG++ VFH VY DL+ NP+IVPLK L HK+V+++GVL
Sbjct: 653 SRALRDVSYHPSLPLFCSGSDDGDVQVFHGRVYSDLLANPLIVPLKILRNHKVVDNVGVL 712
Query: 767 DTIWHPREAWLFSAGADKTARLWT 790
T WHP+EAWLFSAGA R+WT
Sbjct: 713 STCWHPKEAWLFSAGAGGEIRMWT 736
>Hs21327667 [J] KOG0650 WD40 repeat nucleolar protein Bop1 involved in ribosome
biogenesis
Length = 746
Score = 529 bits (1363), Expect = e-150
Identities = 284/717 (39%), Positives = 414/717 (57%), Gaps = 44/717 (6%)
Query: 79 NTSDFSEEGDAFSITDKLSNVKLTVIPETSDEGIVRTKYSDGRPRILKSEINPVYDSDDS 138
++S+ +EGD L + + I +T++E V+ R + + I Y D S
Sbjct: 69 DSSEDDDEGDEEGEDGALDDEGHSGIKKTTEEQ-VQASTPCPRTEMASARIGDEYAEDSS 127
Query: 139 DAE-AKNTIGNIPLSAYDEMPHIGYDINGKRIMRPAKG-SALDQLLESIELPEGWTGLLD 196
D E +NT+GN+PL YD+ PH+GYD++G+RI +P + LDQ L+ ++ P+ W + D
Sbjct: 128 DEEDIRNTVGNVPLEWYDDFPHVGYDLDGRRIYKPLRTRDELDQFLDKMDDPDYWRTVQD 187
Query: 197 KDSGASXXXXXXXXXXINKLQNNQQTDESVNPYEPLIDWFTRHESVMPVTAVPEPKRRFV 256
+G + +LQ+ Q D NPYEP +D+F+ + PVT P KR F+
Sbjct: 188 PMTGRDLRLTDEQVALVRRLQSGQFGDVGFNPYEPAVDFFSGDVMIHPVTNRPADKRSFI 247
Query: 257 PSKHEAKRVMKIVKAIREGRIIPPXXXXXXXXXXXQDSHNYDLWGDAEE---ISEHVMNL 313
PS E ++V ++V AI+ G I P YDLW + + H M++
Sbjct: 248 PSLVEKEKVSRMVHAIKMGWIQPRRPRDPTPSF-------YDLWAQEDPNAVLGRHKMHV 300
Query: 314 RAPKLPPPTNEESYNPPEEYLLTPEEIDAWEKMEPSERERNFVPHKFAALRKVPGYSESV 373
APKL P + ESYNPP EYLL+ EE AWE+ EP ER+ +F+P KF +LR VP Y +
Sbjct: 301 PAPKLALPGHAESYNPPPEYLLSEEERLAWEQQEPGERKLSFLPRKFPSLRAVPAYGRFI 360
Query: 374 RERFERSLDLYLAPRVRKNKLNIDPESLIPELPSTKDLRPFPIRCSTVYVGHKGKIRTMS 433
+ERFER LDLYL PR RK ++N+DPE LIP+LP +DL+PFP + VY GH +R +S
Sbjct: 361 QERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPTCQALVYRGHSDLVRCLS 420
Query: 434 IDPTGLWLATGSDDGTVRVWEILTGREVYQVTILNAEENNDDHIDVVEWNPDSTTGILAV 493
+ P G WL +GSDDG++R+WE+ T R V V + + V WNP S L
Sbjct: 421 VSPGGQWLVSGSDDGSLRLWEVATARCVRTVPVGGV-------VKSVAWNP-SPAVCLVA 472
Query: 494 TAGENIFLLVPPIFGFEIENTGKSKIEYGFGFDTFGNVKKSNLNVNSDDEDDGAESHAVK 553
A E+ LL+ P G + ++ F
Sbjct: 473 AAVEDSVLLLNPALGDRLVAGSTDQLLSAF-----------------------VPPEEPP 509
Query: 554 KQVAQWNKPTERQAANDICIVITCRKSVKKLSWHRKGDYFVTVQPDSGNTSVLIHQLSKH 613
Q A+W + +E + + + I K V +++WH +GDY V G+T VLIHQLS+
Sbjct: 510 LQPARWLEASEEERQVGLRLRICHGKPVTQVTWHGRGDYLAVVLATQGHTQVLIHQLSRR 569
Query: 614 LTQSPFKKSKGIIMDAKFHPFKPQLLVCSQRYVRIYDLSQQVLIKKLLPGARWLSTIDIH 673
+QSPF++S G + FHP +P LLV SQR VR+Y L +Q L KKL+P +W+S++ +H
Sbjct: 570 RSQSPFRRSHGQVQRVAFHPARPFLLVASQRSVRLYHLLRQELTKKLMPNCKWVSSLAVH 629
Query: 674 PRGDNLIASSFDKRVLWHDLDLASTPYKTLRYHEKAVRSVSFHKKLPLFCSAADDGNIHV 733
P GDN+I S+D +++W DLDL++ PY+ LR+H+KA+R+V+FH + PLF S +DDG++ V
Sbjct: 630 PAGDNVICGSYDSKLVWFDLDLSTKPYRMLRHHKKALRAVAFHPRYPLFASGSDDGSVIV 689
Query: 734 FHATVYDDLMKNPMIVPLKKLTGHKIVNSLGVLDTIWHPREAWLFSAGADKTARLWT 790
H VY+DL++NP++VP+K L GH + LGVLD I+HP + W+FS+GAD T RL+T
Sbjct: 690 CHGMVYNDLLQNPLLVPVKVLKGHVLTRDLGVLDVIFHPTQPWVFSSGADGTVRLFT 746
>7302708 [J] KOG0650 WD40 repeat nucleolar protein Bop1 involved in ribosome
biogenesis
Length = 784
Score = 521 bits (1343), Expect = e-147
Identities = 291/720 (40%), Positives = 413/720 (56%), Gaps = 39/720 (5%)
Query: 79 NTSDFSEEGDAFSITDKLSNVKLTVIPETSDEGIVRTKYSDGRPRILKSEINPVY-DSDD 137
N + S +G+ +K S K T + + + P+ + P Y DSD
Sbjct: 96 NEEEESTDGEEVEDEEKDSKSKQTDDKPSGSGAASKKALTAELPK--RDSSKPEYQDSDT 153
Query: 138 SDAE-AKNTIGNIPLSAYDEMPHIGYDINGKRIMRPAKGSALDQLLESIELPEGWTGLLD 196
SD E +NT+GNIP+ YDE HIGYD + K+I++P +G +D+ L IE P+ W + D
Sbjct: 154 SDEEDIRNTVGNIPMHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFWRTVKD 213
Query: 197 KDSGASXXXXXXXXXXINKLQNNQQTDESVNPYEPLIDWFTRHESVMPVTAVPEPKRRFV 256
+G I ++ + + ++ YEP I+WFT MP+ VP+ KR F+
Sbjct: 214 PLTGQDVRLTDEDIALIKRIVSGRIPNKDHEEYEPWIEWFTSEVEKMPIKNVPDHKRSFL 273
Query: 257 PSKHEAKRVMKIVKAIREGRIIPPXXXXXXXXXXXQDSHNYDLWGDAEEISEHVMNLR-- 314
PS E KRV ++V A++ G + + Y LW + + EH+ +
Sbjct: 274 PSVSEKKRVSRMVHALKMGWM-KTTEEVEREKQAKRGPKFYMLW-ETDTSREHMRRIHDP 331
Query: 315 --APKLPPPTNEESYNPPEEYLLTPEEIDAWEKM--EPSERERNFVPHKFAALRKVPGYS 370
APK P + ESYNPP EYL +E W K+ EP +R+ +F+P KF +LR+VP YS
Sbjct: 332 VSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKDEPHKRKLHFMPQKFKSLREVPAYS 391
Query: 371 ESVRERFERSLDLYLAPRVRKNKLNIDPESLIPELPSTKDLRPFPIRCSTVYVGHKGKIR 430
+RERF R LDLYL PR ++ KLNID E LIP+LPS +DL+PFP S VY GH +R
Sbjct: 392 RYLRERFLRCLDLYLCPRAKRVKLNIDAEYLIPKLPSPRDLQPFPTVESMVYRGHTDLVR 451
Query: 431 TMSIDPTGLWLATGSDDGTVRVWEILTGREVYQVTILNAEENNDDHIDVVEWNPDSTTGI 490
++S++P G +L +GSDD TV++WEI TGR + + D+ + V W P+ I
Sbjct: 452 SVSVEPKGEYLVSGSDDKTVKIWEIATGRCIRTI-------ETDEVVRCVAWCPNPKLSI 504
Query: 491 LAVTAGENIFLLVPPIFGFEIENTGKSKIEYGFGFDTFGNVKKSNLNVNSDDEDDGAESH 550
+AV G N LLV P G ++ VKK++ + D ES
Sbjct: 505 IAVATG-NRLLLVNPKVGDKVL------------------VKKTDDLLAEAPSQDVIESE 545
Query: 551 AVKKQVAQWNKPTERQAANDICIVITCRKSVKKLSWHRKGDYFVTVQPDSGNTSVLIHQL 610
+K V QW+ + + +VIT K +++++WH +GDY TV P+ N S LIHQL
Sbjct: 546 RIKTAV-QWSNAEADEQEKGVRVVITHFKPIRQVTWHGRGDYLATVMPEGANRSALIHQL 604
Query: 611 SKHLTQSPFKKSKGIIMDAKFHPFKPQLLVCSQRYVRIYDLSQQVLIKKLLPGARWLSTI 670
SK +Q PF KSKG+I FHP KP V +Q +RIYDL +Q L+KKLL ++W+S +
Sbjct: 605 SKRRSQIPFSKSKGLIQFVLFHPVKPCFFVATQHNIRIYDLVKQELVKKLLTNSKWISGM 664
Query: 671 DIHPRGDNLIASSFDKRVLWHDLDLASTPYKTLRYHEKAVRSVSFHKKLPLFCSAADDGN 730
IHP+GDNL+ S++DK++LW DLDL++ PY+T+R H AVRSV+FH + PLF S +DD
Sbjct: 665 SIHPKGDNLLVSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHLRYPLFASGSDDQA 724
Query: 731 IHVFHATVYDDLMKNPMIVPLKKLTGHKIVNSLGVLDTIWHPREAWLFSAGADKTARLWT 790
+ V H VY+DL++NP+IVPLKKL H+ + GVLD WHP + W+FS GAD T RL+T
Sbjct: 725 VIVSHGMVYNDLLQNPLIVPLKKLQTHEKRDEFGVLDVNWHPVQPWVFSTGADSTIRLYT 784
>CE22116 [J] KOG0650 WD40 repeat nucleolar protein Bop1 involved in ribosome
biogenesis
Length = 674
Score = 452 bits (1164), Expect = e-127
Identities = 261/708 (36%), Positives = 389/708 (54%), Gaps = 78/708 (11%)
Query: 114 RTKYSDGR--PRILKSE------INPV---------YDSDDSDAE-AKNTIGNIPLSAYD 155
+ K+ +G+ P+ LK E I PV YD D SD E +NTIGNIP+ YD
Sbjct: 13 KRKFENGKKKPKTLKDEFGEKLDIKPVIVPPKPADEYDYDSSDEEDLRNTIGNIPIKWYD 72
Query: 156 EMPHIGYDINGKRIMRPAKGSALDQLLESIELPEGWTGLLDKDSGASXXXXXXXXXXINK 215
+ HIGYD G++I +PAK ++ LE +E P+ W + DK +G I+
Sbjct: 73 DEDHIGYDKFGEKIAKPAKKGEIETFLEKMEDPDYWRKVFDKQTGTDVKLTDEQIEKIHN 132
Query: 216 LQNNQQTDESVNPYEPLIDWFTRHESVMPVTAVPEPKRRFVPSKHEAKRVMKIVKAIREG 275
+ + NPYEP +D F+ + + P+ PEPK RF+PSK E + V ++V AI+ G
Sbjct: 133 IATGKYPTIGYNPYEPFLDIFSSQKEIHPIDNRPEPKSRFIPSKDEMRMVSRMVHAIKMG 192
Query: 276 RIIPPXXXXXXXXXXXQDSHNYDLWGDAE--------EISEHVMNLRAPKLPPPTNEESY 327
P ++ +YDLW + ++S +++ APK+ PT+ ESY
Sbjct: 193 WAKGPRAKK-------EEHKSYDLWASEDALDNVTKSQLSRMRVHMPAPKVALPTHAESY 245
Query: 328 NPPEEYLLTPEEIDAWEKMEPSERERNFVPHKFAALRKVPGYSESVRERFERSLDLYLAP 387
NPPEEY+ EE WE+ E +R NF+P K+ ALRKVP Y + + ERFER LDLYLAP
Sbjct: 246 NPPEEYIFDDEERKKWEEAEKEDRVLNFMPSKYDALRKVPQYDKFITERFERCLDLYLAP 305
Query: 388 RVRKNKLNIDPESLIPELPSTKDLRPFPIRCSTVYVGHKGKIRTMSIDP-TGLWLATGSD 446
R RK +++ DP L+P+LP+ DLRPFP + GH G++R ++++P G LA+G +
Sbjct: 306 RQRKMRIHADPTDLLPDLPNPNDLRPFPTTLAFYMRGHTGQVRAITVEPERGELLASGGE 365
Query: 447 DGTVRVWEILTGR--EVYQVTILNAEENNDDHIDVVEWNPDSTTGILAVT-AGENIFLLV 503
DGTVR+W I TGR + +Q+ D + V ++P + +LAV G+ + +L
Sbjct: 366 DGTVRIWMIATGRCIKTFQM---------DGEVTSVSFSPVADRTLLAVAYEGKYVAIL- 415
Query: 504 PPIFGFEIENTGKSKIEYGFGFDTFGNVKKSNLNVNSDDEDDGAESHAVKKQVAQWNKPT 563
NTG + + +D ++DGA V W K
Sbjct: 416 ---------NTGCGDRLH------VQQTEALLAETPTDAQEDGA--------VVTWRKSK 452
Query: 564 ERQAANDICIVITCRKSVKKLSWHRKGDYFVTVQPDSGNTSVLIHQLSKHLTQSPFKKSK 623
E+ +++ V++++WH KGDYF +V D SV +HQLSK +Q PF+K K
Sbjct: 453 EK-------LMLKMPNEVRQVTWHSKGDYFASVAIDDIAKSVYVHQLSKAKSQCPFQKRK 505
Query: 624 GIIMDAKFHPFKPQLLVCSQRYVRIYDLSQQVLIKKLLPGARWLSTIDIHPRGDNLIASS 683
G + FHP + +L V ++ +VR YDL++ VL+KKL+ G + +ST+ G+NL
Sbjct: 506 GHVQAVTFHPTQARLFVATKIHVREYDLARCVLVKKLITGCKHISTMATDANGENLFLGG 565
Query: 684 FDKRVLWHDLDLASTPYKTLRYHEKAVRSVSFHKKLPLFCSAADDGNIHVFHATVYDDLM 743
D+R W DL + + P+K L++H AVRSV++HKK PL + +DDG V++A +Y D +
Sbjct: 566 LDRRFCWMDLQMGNKPWKKLKHHTAAVRSVAYHKKYPLLATVSDDGTAMVYYARIYTDFV 625
Query: 744 KNPMIVPLKKLTGH-KIVNSLGVLDTIWHPREAWLFSAGADKTARLWT 790
K+ + P+K+L H K N L +L T WHP + WL +AGAD T L+T
Sbjct: 626 KDNELYPVKRLRAHEKTPNDLCMLHTTWHPTQPWLITAGADGTIALFT 673
>At2g40360 [J] KOG0650 WD40 repeat nucleolar protein Bop1 involved in ribosome
biogenesis
Length = 775
Score = 450 bits (1157), Expect = e-126
Identities = 258/675 (38%), Positives = 380/675 (56%), Gaps = 66/675 (9%)
Query: 134 DSDDSDAEAKNTIGNIPLSAYDEMPHIGYDINGKRIMRPAKGSALDQLLESIE------- 186
DS + + ++NT+GN+PL Y++ HIGYD+ GK+I + K LD L +I+
Sbjct: 146 DSSEDEVPSRNTVGNVPLKWYEDEKHIGYDLTGKKITKKEKQDKLDSFLATIDDSKTCWC 205
Query: 187 --LPEGWTG----LLDKDSGASXXXXXXXXXXINKLQNNQQTDESVNPYEPLIDWFTRHE 240
E + G + D+ + + ++ + +PY P ++WF +
Sbjct: 206 HNADESFWGFRRKIYDEYNDEDVELTKEESKIVQRILKGEAPHADFDPYAPYVEWFKHDD 265
Query: 241 SVMPVTAVPEPKRRFVPSKHEAKRVMKIVKAIREGRIIPPXXXXXXXXXXXQDSHNYDLW 300
++ P+++ PEPKRRF+PSK EAK+V+KIV+AIR+G I ++ + Y LW
Sbjct: 266 AIHPLSSAPEPKRRFIPSKWEAKKVVKIVRAIRKGWI--------KFDKPEEEPNVYLLW 317
Query: 301 GD---AEEISEHVMNLRAPKLPPPTNEESYNPPEEYLLTPEEIDAWEKMEPSERERNFVP 357
GD +++ S+H+ + PKL P ++ESYNP EY+ T EE ++E M +R + F+P
Sbjct: 318 GDDSTSDQKSKHLTYIPPPKLKLPGHDESYNPSLEYIPTEEEKASYELMFEEDRPK-FIP 376
Query: 358 HKFAALRKVPGYSESVRERFERSLDLYLAPRVRKNKLNIDPESLIPELPSTKDLRPFPIR 417
+F +LR +P Y +++E FER LDLYL PRVRK ++NIDPESL P+LPS KDLRP+P
Sbjct: 377 TRFTSLRSIPAYENALKESFERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPYPNS 436
Query: 418 CSTVYVGHKGKIRTMSIDPTGLWLATGSDDGTVRVWEILTGR--EVYQVTILNAEENNDD 475
C Y GH G + ++S D +G W+A+GS DG+VR+WE+ TGR +V+Q D+
Sbjct: 437 CYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRCLKVWQF---------DE 487
Query: 476 HIDVVEWNPDSTTGILAVTAGENIFLLVPPIFGFEIENTGKSKIEYGFGFDTFGNVKKSN 535
I V WNP S +LAV G ++F L NT G D + K
Sbjct: 488 AIMCVAWNPLSRLPVLAVAMGRDLFFL----------NT-------ELGTDEEQEITKER 530
Query: 536 LNVNSDDEDDGAESHAVKKQVAQWNKPTERQAANDICIVITCRKSVKKLSWHRKGDYFVT 595
L+ + E D + + + W P E I I KS+ + WHRKGDY T
Sbjct: 531 LHSGNIPEPDASVA-----AIVTW-LPDELYGG----IKIRHFKSISSIDWHRKGDYLST 580
Query: 596 VQPDSGNTSVLIHQLSKHLTQSPFKKSKGIIMDAKFHPFKPQLLVCSQRYVRIYDLSQQ- 654
V V++HQLSK TQ K +G+ + FHP V +++ VR+Y+L +
Sbjct: 581 VMASGETRGVVLHQLSKQKTQRLPFKIRGLPVCTLFHPSLSYFFVATRKDVRVYNLLKPG 640
Query: 655 VLIKKLLPGARWLSTIDIHPRGDNLIASSFDKRVLWHDLDLASTPYKTLRYHEKAVRSVS 714
KKL G R +S++ IHP GDNLI S + ++ W D+DL+S PYKTL+ H K + +V+
Sbjct: 641 EATKKLETGLREISSMAIHPGGDNLIVGSKEGKMCWFDMDLSSKPYKTLKNHPKDITNVA 700
Query: 715 FHKKLPLFCSAADDGNIHVFHATVYDDLMKNPMIVPLKKLTGHKIVNSLGVLDTIWHPRE 774
H+ PLF S ++D +VFH VY+DL +NP+IVPL+ L GH + GVLD +HPR+
Sbjct: 701 VHRSYPLFASCSEDSTAYVFHGMVYNDLNQNPLIVPLEILRGHS--SKGGVLDCKFHPRQ 758
Query: 775 AWLFSAGADKTARLW 789
WLF+AGAD +L+
Sbjct: 759 PWLFTAGADSIIKLY 773
>YDL145c [U] KOG0292 Vesicle coat complex COPI alpha subunit
Length = 1201
Score = 56.6 bits (135), Expect = 1e-07
Identities = 47/175 (26%), Positives = 79/175 (44%), Gaps = 19/175 (10%)
Query: 616 QSPFKKSKGIIMDAKFHPFKPQLLVCS-QRYVRIYDLSQQVLIKKLLPGARWLSTIDIHP 674
+S ++KGI FHP +P +LV ++++D L+ + + +D HP
Sbjct: 8 ESKSTRAKGIA----FHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLDFHP 63
Query: 675 RGDNLIASSFDKRVLWHDLDLASTPYKTLRYHEKAVRSVSFHKKLPLFCSAADDGNIHVF 734
+++ D + LD Y TL H VR+V FH++LP SA+DD I ++
Sbjct: 64 TQPIFVSAGDDYTIKVWSLDTNKCLY-TLTGHLDYVRTVFFHRELPWIISASDDQTIRIW 122
Query: 735 HATVYDDLMKNPMIVPLKKLTGHKIVNSLGVLDTIWHPREAWLFSAGADKTARLW 789
+ + + LTGH V+ +HP + + SA D+T R+W
Sbjct: 123 NWQNRKE---------IACLTGHNHF----VMCAQFHPTDDLIVSASLDETIRIW 164
>CE29430 [R] KOG0641 WD40 repeat protein
Length = 689
Score = 55.1 bits (131), Expect = 4e-07
Identities = 43/156 (27%), Positives = 75/156 (47%), Gaps = 12/156 (7%)
Query: 637 QLLVCSQ-RYVRIYDLSQQVLIKKLLPG-ARWLSTIDIHPRGDNLIASSFDKRVLWHDLD 694
Q + CSQ + +R +DL QQ + + PG A ++++ + P G L++ D V D+
Sbjct: 540 QFVSCSQDKTIRFWDLRQQTAVNVISPGNASPVTSVCVDPNGKLLVSGHEDASVALFDIG 599
Query: 695 LASTPYKTLRYHEKAVRSVSFHKKLPLFCSAADDGNIHVFHATVYDDLMKNPMIVPLKKL 754
+ +T R H VR+V F +A+ D + + + + DLM M +P+ +
Sbjct: 600 -GNRILQTFRPHGDEVRTVRFSNAAYYLLTASYDKRVVI--SDMRGDLMAPLMYLPVAE- 655
Query: 755 TGHKIVNSLGVLDTIWHPREAWLFSAGADKTARLWT 790
+S V+ WHP + S AD++A LW+
Sbjct: 656 ------HSDKVVQCRWHPHDFSFLSTSADRSAVLWS 685
>CE18673 [U] KOG0276 Vesicle coat complex COPI beta' subunit
Length = 1000
Score = 52.4 bits (124), Expect = 3e-06
Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 30/238 (12%)
Query: 559 WNKPTERQAAN-DICIV-ITCRKSVKKLSWHRKGDYFVTVQPDSGNTSVLIHQLSKHLTQ 616
WN T+ + ++C V + K V + SW G + ++ + NT +HQ H
Sbjct: 42 WNYETQTLVKSFEVCDVPVRAAKFVPRKSWVVTGSDDMHIRVFNYNTLERVHQFEAH--- 98
Query: 617 SPFKKSKGIIMDAKFHPFKPQLLVCSQ-RYVRIYDLSQQVLIKKLLPG-ARWLSTIDIHP 674
S + +S + HP P ++ S V+++D + +K+ G ++ I I+P
Sbjct: 99 SDYLRSLVV------HPTLPYVISSSDDMLVKMWDWDNKWAMKQSFEGHTHYVMQIAINP 152
Query: 675 RGDNLIAS-SFDKRVLWHDLDLASTPYKTLRYHEKAVRSVSFHK--KLPLFCSAADDGNI 731
+ +N A+ S DK V ++ P TL HEK V V ++ + P S ADD +
Sbjct: 153 KDNNTFATASLDKTVKVWQFG-SNVPNFTLEGHEKGVNCVDYYHGGEKPYIISGADDHLV 211
Query: 732 HVFHATVYDDLMKNPMIVPLKKLTGHKIVNSLGVLDTIWHPREAWLFSAGADKTARLW 789
++ +N V + L GH + V +HP + + D T RLW
Sbjct: 212 KIWD-------YQNKTCV--QTLDGH----AQNVSSVCFHPELPLIITGSEDSTVRLW 256
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,880,600
Number of Sequences: 60738
Number of extensions: 2137494
Number of successful extensions: 8573
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8509
Number of HSP's gapped (non-prelim): 40
length of query: 791
length of database: 30,389,216
effective HSP length: 114
effective length of query: 677
effective length of database: 23,465,084
effective search space: 15885861868
effective search space used: 15885861868
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)