ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI7223   good          J     KOG3419  Translation, ribosomal structure and biogenesis                Mitochondrial/chloroplast ribosomal protein S16

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI7223 2520058 2519699 -120 
         (120 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPL013c [J] KOG3419 Mitochondrial/chloroplast ribosomal protein S16   162   9e-41
SPBC354.06 [J] KOG3419 Mitochondrial/chloroplast ribosomal prote...    87   4e-18
At4g34620 [J] KOG3419 Mitochondrial/chloroplast ribosomal protei...    77   4e-15
At5g56940 [J] KOG3419 Mitochondrial/chloroplast ribosomal protei...    73   6e-14
7303221 [J] KOG3419 Mitochondrial/chloroplast ribosomal protein S16    50   5e-07

>YPL013c [J] KOG3419 Mitochondrial/chloroplast ribosomal protein S16
          Length = 121

 Score =  162 bits (409), Expect = 9e-41
 Identities = 81/121 (66%), Positives = 97/121 (79%), Gaps = 2/121 (1%)

Query: 1   MTKGLVRIRLARFGRKHTPVYNIVVTNKHKALNRKPIEVLGTYNPIPKPLTKKEVKQGVV 60
           MT GLVRIRLARFGRK++PVYNIVV N  KA + KPIEVLGTY P+P P+TK+E+K+GVV
Sbjct: 1   MTCGLVRIRLARFGRKNSPVYNIVVANSRKARDAKPIEVLGTYVPVPSPVTKRELKRGVV 60

Query: 61  PTKDVELDFGRAKYWIGVGAQPSDTVTRLLRKAGILDENWGKTYTS--SRVVIEPRKEVF 118
           P KDV+LDF R KYWIGVGAQPS+TVT+LLRKAGIL++ W  +  S  +R V+  R E  
Sbjct: 61  PIKDVKLDFDRTKYWIGVGAQPSETVTKLLRKAGILNDAWATSKNSNVNRKVVFERMETL 120

Query: 119 E 119
           E
Sbjct: 121 E 121


>SPBC354.06 [J] KOG3419 Mitochondrial/chloroplast ribosomal protein S16
          Length = 96

 Score = 87.0 bits (214), Expect = 4e-18
 Identities = 45/88 (51%), Positives = 59/88 (66%), Gaps = 3/88 (3%)

Query: 5  LVRIRLARFGRKHTPVYNIVVTNKHKALNRKPIEVLGTYNPIPKPLTKKEVKQGVVPTKD 64
          +V+IRLAR G ++ P Y+IVV N  KA   KPIE +GT++PIPK   K + +  +   KD
Sbjct: 2  VVKIRLARHGVRNRPFYHIVVANAWKAPQAKPIETIGTFDPIPK---KIDSQDSIPRIKD 58

Query: 65 VELDFGRAKYWIGVGAQPSDTVTRLLRK 92
          ++L+  R KYWI VGAQPSDTV  L  K
Sbjct: 59 IQLNVERFKYWISVGAQPSDTVRSLAEK 86


>At4g34620 [J] KOG3419 Mitochondrial/chloroplast ribosomal protein S16
          Length = 113

 Score = 77.0 bits (188), Expect = 4e-15
 Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 10/91 (10%)

Query: 6  VRIRLARFGRKHTPVYNIVVTNKHKALNRKPIEVLGTYNPIPKPLTKKEVKQGVVPTKDV 65
          V+IRLAR G KH P Y +VV ++    + K IEVLG Y+P+          QG      V
Sbjct: 3  VKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPL----------QGKEDADRV 52

Query: 66 ELDFGRAKYWIGVGAQPSDTVTRLLRKAGIL 96
           L F R KYW+ VGAQP+DTV  +L +AG++
Sbjct: 53 SLKFDRIKYWLSVGAQPTDTVESMLFRAGLI 83


>At5g56940 [J] KOG3419 Mitochondrial/chloroplast ribosomal protein S16
          Length = 135

 Score = 73.2 bits (178), Expect = 6e-14
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 10/92 (10%)

Query: 5  LVRIRLARFGRKHTPVYNIVVTNKHKALNRKPIEVLGTYNPIPKPLTKKEVKQGVVPTKD 64
          +VRIRL+RFG K+ P + ++  +     + K +EVLG +NP+P          G    K 
Sbjct: 2  VVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLP----------GQDGGKR 51

Query: 65 VELDFGRAKYWIGVGAQPSDTVTRLLRKAGIL 96
          + L F R KYW+ VGAQPSD V RLL ++G+L
Sbjct: 52 MGLKFDRIKYWLSVGAQPSDPVQRLLFRSGLL 83


>7303221 [J] KOG3419 Mitochondrial/chloroplast ribosomal protein S16
          Length = 129

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 33/115 (28%), Positives = 52/115 (44%), Gaps = 17/115 (14%)

Query: 8   IRLARFGRKHTPVYNIVVTNKHKALNRKPIEVLGTYNPIPKPLTKKEVKQGVVPTKDVEL 67
           IR  R G  + P Y+IVV  + K  ++  IE +G+++P+P    ++           V L
Sbjct: 20  IRFVRLGCTNRPFYHIVVMERRKNQHQPVIEQVGSFDPLPNDYNERL----------VAL 69

Query: 68  DFGRAKYWIGVGAQPSDTVTRLLRKAGILDEN-------WGKTYTSSRVVIEPRK 115
           +  R +YW+G GA  S     LL  AG+L  +       W    T++     P K
Sbjct: 70  NTERIRYWLGKGAHLSTPAAELLGIAGLLPIHPRTYMTAWRNRRTAAEAEASPEK 124


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,466,757
Number of Sequences: 60738
Number of extensions: 311384
Number of successful extensions: 652
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 30,389,216
effective HSP length: 96
effective length of query: 24
effective length of database: 24,558,368
effective search space: 589400832
effective search space used: 589400832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)