ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI7246 good U KOG3343 Intracellular trafficking, secretion, and vesicular transport Vesicle coat complex COPI, zeta subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI7246 2526333 2526899 189
(189 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL010w [U] KOG3343 Vesicle coat complex COPI zeta subunit 201 5e-52
SPCC576.07 [U] KOG3343 Vesicle coat complex COPI zeta subunit 131 6e-31
Hs7706337 [U] KOG3343 Vesicle coat complex COPI zeta subunit 101 5e-22
7294073 [U] KOG3343 Vesicle coat complex COPI zeta subunit 90 2e-18
Hs7705983 [U] KOG3343 Vesicle coat complex COPI zeta subunit 82 4e-16
CE11494 [U] KOG3343 Vesicle coat complex COPI zeta subunit 77 2e-14
At1g60970 [U] KOG3343 Vesicle coat complex COPI zeta subunit 67 2e-11
At3g09800 [U] KOG3343 Vesicle coat complex COPI zeta subunit 66 3e-11
At4g08520 [U] KOG3343 Vesicle coat complex COPI zeta subunit 57 2e-08
>YPL010w [U] KOG3343 Vesicle coat complex COPI zeta subunit
Length = 189
Score = 201 bits (511), Expect = 5e-52
Identities = 99/190 (52%), Positives = 141/190 (74%), Gaps = 2/190 (1%)
Query: 1 MVNLSLYTVKAVLILDGEGRRLYSKYFHPPHEEISADSLA-SSLKKQKEFESNLFAKTHG 59
M +LSLYTV+AVLILD +G R+Y+KY+ PPH L +S+KKQKEFE L+ KTH
Sbjct: 1 MSSLSLYTVQAVLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHK 60
Query: 60 QNSDIMISDDLLVIYREYVDVSIYLIGAIDENEIVLQEAFNGFKDSLELILDTGIDKRSV 119
Q+S+I+I +D LV+Y+EY+D++IYL+ +++ENEIVLQ+ F+ + +L+LIL++G+DK+++
Sbjct: 61 QDSEILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNI 120
Query: 120 QEHYDMVVLAXXXXXXXXXXXXXXPATIASRVTKPPSKDIPLNIELNEKGLLSAWGFAKS 179
QE+YDMV+LA TIASRV+KPP+ + + ++L +KG L AWGFAKS
Sbjct: 121 QENYDMVLLAIDETIDNGVILETDSNTIASRVSKPPTNEPQMALDL-DKGFLGAWGFAKS 179
Query: 180 KLAERLQQGL 189
K ERLQQGL
Sbjct: 180 KFQERLQQGL 189
>SPCC576.07 [U] KOG3343 Vesicle coat complex COPI zeta subunit
Length = 190
Score = 131 bits (329), Expect = 6e-31
Identities = 67/188 (35%), Positives = 110/188 (57%), Gaps = 1/188 (0%)
Query: 2 VNLSLYTVKAVLILDGEGRRLYSKYFHPPHEEISADSLASSLKKQKEFESNLFAKTHGQN 61
+NL+LY V A LILD G+R+++KY+ PPH + + +S+K++K FE LF KT
Sbjct: 1 MNLTLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKTQ 60
Query: 62 SDIMISDDLLVIYREYVDVSIYLIGAIDENEIVLQEAFNGFKDSLELILDTGIDKRSVQE 121
+DI+ D LV+ +DV Y++G ++ENE++L E +D+LEL+ DKR++ E
Sbjct: 61 NDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLE 120
Query: 122 HYDMVVLAXXXXXXXXXXXXXXPATIASRVTKPPSKDIPLNI-ELNEKGLLSAWGFAKSK 180
+YD +V+ PA IA+RVTK P + + + E G ++++ A+ K
Sbjct: 121 NYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSEAQAIVSDFKEMGFMNSFQKAREK 180
Query: 181 LAERLQQG 188
+ ER+ +G
Sbjct: 181 ITERILKG 188
>Hs7706337 [U] KOG3343 Vesicle coat complex COPI zeta subunit
Length = 177
Score = 101 bits (252), Expect = 5e-22
Identities = 60/169 (35%), Positives = 93/169 (54%), Gaps = 10/169 (5%)
Query: 5 SLYTVKAVLILDGEGRRLYSKYFHPPHEEISADSLASSLKKQKEFESNLFAKTHGQNSDI 64
SLYTVKA+LILD +G RL++KY+ D S+K+QK FE N+F KTH +S+I
Sbjct: 9 SLYTVKAILILDNDGDRLFAKYY---------DDTYPSVKEQKAFEKNIFNKTHRTDSEI 59
Query: 65 MISDDLLVIYREYVDVSIYLIGAIDENEIVLQEAFNGFKDSLELILDTGIDKRSVQEHYD 124
+ + L V+Y+ +D+ Y+IG+ ENE++L N DSL +L ++KR++ E+ +
Sbjct: 60 ALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENME 119
Query: 125 MVVLAXXXXXXXXXXXXXXPATIASRVTKPPSKDIPLNIELNEKGLLSA 173
+ LA P + RV +D+PL + + L SA
Sbjct: 120 GLFLAVDEIVDGGVILESDPQQVVHRVAL-RGEDVPLTEQTVSQVLQSA 167
>7294073 [U] KOG3343 Vesicle coat complex COPI zeta subunit
Length = 160
Score = 90.1 bits (222), Expect = 2e-18
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 9/147 (6%)
Query: 15 LDGEGRRLYSKYFHPPHEEISADSLASSLKKQKEFESNLFAKTHGQNSDIMISDDLLVIY 74
+D +G R+ +KY+ ++ S+LK+QK FE NLF KTH N++I++ D L +Y
Sbjct: 1 MDNDGNRILAKYYDK--------NILSTLKEQKAFEKNLFNKTHRSNTEIIMLDGLTCVY 52
Query: 75 REYVDVSIYLIGAIDENEIVLQEAFNGFKDSLELILDTGIDKRSVQEHYDMVVLAXXXXX 134
+ VD+ Y++G ENE++L N DS+ LIL ++KR V E+ ++++LA
Sbjct: 53 KSNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLVLENLEIIMLAFDEIC 112
Query: 135 XXXXXXXXXPATIASRVTKPPSKDIPL 161
P+++ RV + DIP+
Sbjct: 113 DGGIILDADPSSVVKRVDL-RNDDIPI 138
>Hs7705983 [U] KOG3343 Vesicle coat complex COPI zeta subunit
Length = 210
Score = 82.0 bits (201), Expect = 4e-16
Identities = 43/120 (35%), Positives = 69/120 (56%), Gaps = 9/120 (7%)
Query: 5 SLYTVKAVLILDGEGRRLYSKYFHPPHEEISADSLASSLKKQKEFESNLFAKTHGQNSDI 64
SLYT+KAV ILD +GRRL +KY+ D S+K+Q FE N+F KT S+I
Sbjct: 42 SLYTIKAVFILDNDGRRLLAKYY---------DDTFPSMKEQMVFEKNVFNKTSRTESEI 92
Query: 65 MISDDLLVIYREYVDVSIYLIGAIDENEIVLQEAFNGFKDSLELILDTGIDKRSVQEHYD 124
+ ++Y+ +D+ +Y++G+ ENE++L +SL +L ++KR + E+ D
Sbjct: 93 AFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMD 152
>CE11494 [U] KOG3343 Vesicle coat complex COPI zeta subunit
Length = 184
Score = 76.6 bits (187), Expect = 2e-14
Identities = 39/125 (31%), Positives = 74/125 (59%), Gaps = 9/125 (7%)
Query: 5 SLYTVKAVLILDGEGRRLYSKYFHPPHEEISADSLASSLKKQKEFESNLFAKTHGQNS-D 63
SLY++K ++ILD +G R+ +KY+ + ++K+QK FE +LF+KT S D
Sbjct: 10 SLYSIKGIVILDQDGNRVLAKYYDR--------TTFGTVKEQKAFEKSLFSKTSRNTSAD 61
Query: 64 IMISDDLLVIYREYVDVSIYLIGAIDENEIVLQEAFNGFKDSLELILDTGIDKRSVQEHY 123
I++ D + +YR VD+ Y++G+ ENE+ L D++ ++L ++K+++ +
Sbjct: 62 ILLLDGVTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSM 121
Query: 124 DMVVL 128
D ++L
Sbjct: 122 DTIML 126
>At1g60970 [U] KOG3343 Vesicle coat complex COPI zeta subunit
Length = 162
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/125 (28%), Positives = 68/125 (53%), Gaps = 13/125 (10%)
Query: 9 VKAVLILDGEGRRLYSKYFHPPHEEISADSLASSLKKQKEFESNLFAKTHGQNS----DI 64
VK +L+LD EG+R+ KY+ SA Q+ FE ++F KT N+ ++
Sbjct: 7 VKNILLLDSEGKRVAVKYYSDDWPTNSA---------QEAFEKSVFTKTQKTNARTEVEV 57
Query: 65 MISDDLLVIYREYVDVSIYLIGAIDENEIVLQEAFNGFKDSLELILDTGIDKRSVQEHYD 124
++ +V+Y+ D+ ++ G +ENE++L G D++ L+L + +DKR ++ D
Sbjct: 58 TALENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLD 117
Query: 125 MVVLA 129
++ L+
Sbjct: 118 LIFLS 122
>At3g09800 [U] KOG3343 Vesicle coat complex COPI zeta subunit
Length = 180
Score = 65.9 bits (159), Expect = 3e-11
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 13/147 (8%)
Query: 9 VKAVLILDGEGRRLYSKYFHPPHEEISADSLASSLKKQKEFESNLFAKTHGQNS----DI 64
VK +L+LD EG+R+ KY+ +D ++ K FE +F+KT N+ +I
Sbjct: 9 VKNILLLDSEGKRVAVKYY--------SDDWPTNAAKLS-FEKYVFSKTSKTNARTEAEI 59
Query: 65 MISDDLLVIYREYVDVSIYLIGAIDENEIVLQEAFNGFKDSLELILDTGIDKRSVQEHYD 124
+ D +++Y+ D+ ++ G +ENE++L GF D++ L+L + ++K E+ D
Sbjct: 60 TLLDSNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLD 119
Query: 125 MVVLAXXXXXXXXXXXXXXPATIASRV 151
++ L P IA +V
Sbjct: 120 LIFLCLDEMVDQGVVLETDPNVIAGKV 146
>At4g08520 [U] KOG3343 Vesicle coat complex COPI zeta subunit
Length = 153
Score = 57.0 bits (136), Expect = 2e-08
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 16 DGEGRRLYSKYFHPPHEEISADSLASSLKKQKEFESNLFAKTHGQNS----DIMISDDLL 71
D EG+R+ KY+ +D A++ K FE +F+KT N+ +I + + +
Sbjct: 29 DSEGKRVAVKYY--------SDDWATNASKLA-FEKYVFSKTSKTNARTEAEITLLESNI 79
Query: 72 VIYREYVDVSIYLIGAIDENEIVLQEAFNGFKDSLELILDTGIDKRSVQEHYDMVVL 128
V+Y+ D+ ++ G +ENE+VL GF D++ L+L ++K E+ D++ L
Sbjct: 80 VVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 136
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.136 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,815,398
Number of Sequences: 60738
Number of extensions: 351023
Number of successful extensions: 974
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 9
length of query: 189
length of database: 30,389,216
effective HSP length: 100
effective length of query: 89
effective length of database: 24,315,416
effective search space: 2164072024
effective search space used: 2164072024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)