ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI7255 good R KOG2030 General function prediction only Predicted RNA-binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI7255 2530228 2527148 -1027
(1027 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL009c [R] KOG2030 Predicted RNA-binding protein 869 0.0
SPCC132.01c [R] KOG2030 Predicted RNA-binding protein 216 1e-55
CE27042 [R] KOG2030 Predicted RNA-binding protein 202 3e-51
SPCC1322.17c [R] KOG2030 Predicted RNA-binding protein 193 1e-48
7301276 [R] KOG2030 Predicted RNA-binding protein 187 7e-47
At5g49930 [R] KOG2030 Predicted RNA-binding protein 183 1e-45
Hs22048155 [R] KOG2030 Predicted RNA-binding protein 155 4e-37
ECU06g1390 [R] KOG2030 Predicted RNA-binding protein 75 5e-13
>YPL009c [R] KOG2030 Predicted RNA-binding protein
Length = 1038
Score = 869 bits (2245), Expect = 0.0
Identities = 466/1050 (44%), Positives = 653/1050 (61%), Gaps = 58/1050 (5%)
Query: 1 MKQRLSSLDLQLISKELENQIVGFRLRNIYNIADSNRQFLLKFGKPDSKLNVVIDCGLRV 60
MKQR+S+LDL L+++EL+ + G+RL NIYNIADS++QFLLKF KPDSKLNVV+DCGLR+
Sbjct: 1 MKQRISALDLLLLARELKQDLEGYRLSNIYNIADSSKQFLLKFNKPDSKLNVVVDCGLRI 60
Query: 61 HTTDFTRPIPPTPSWFVSKLRSYLKEKRLTAVKQIPNDRIIVFTFADGKYYLVLEFFSAG 120
+ T+F+RPIPPTPS FV KLR +LK KRLTA+KQ+ DRI+V FADG +YLVLEFFSAG
Sbjct: 61 YLTEFSRPIPPTPSGFVVKLRKHLKAKRLTALKQVDQDRILVLQFADGHFYLVLEFFSAG 120
Query: 121 NVXXXXXXXXXXXXXRVVDDYSMKVGEFYDMAN---FAEINQTSTTVPDPK---EYFENE 174
NV RVV ++ KVG+ Y+M + F N+++ + EY
Sbjct: 121 NVILLDENRRIMALQRVVLEHENKVGQIYEMFDESLFTTNNESADESIEKNRKAEYTSEL 180
Query: 175 IADWLKEADVKAKSTI-----VPGEXXXXXXXXXXSVPSIQKLLFVHAPHLSSDLIQNSL 229
+ +W+K K +S I + + VPSI KLL PHLSSDL+ +L
Sbjct: 181 VNEWIKAVQAKYESDITVIKQLNIQGKEGAKKKKVKVPSIHKLLLSKVPHLSSDLLSKNL 240
Query: 230 KAIGIDPSSSCLEFKHNVSVLVDLMSSLEVQANKLISTTSTRIGYIVAHKNKLYDPLRDK 289
K IDPS SCL L +L++S +++ N+L++TT R GYI+A +N+ Y +D
Sbjct: 241 KVFNIDPSESCLNLLEETDSLAELLNSTQLEYNQLLTTTD-RKGYILAKRNENYISEKDT 299
Query: 290 PELEYTFSNFHPFKPFV--GDSTDVKIIEIGGMYNNTVDTFFSTIESNKYASRIQNQDFQ 347
+LE+ + FHPFKP++ GD+ IIE+ G YN T+D FFSTIES+KYA RIQNQ+ Q
Sbjct: 300 ADLEFIYDTFHPFKPYINGGDTDSSCIIEVEGPYNRTLDKFFSTIESSKYALRIQNQESQ 359
Query: 348 AQKKLDEAKNNNETIIKSLLHAQQTNEEKGNILIANANLVEEAKNAVKSLLDQQMDWQSM 407
AQKK+D+A+ N+ I++LL Q+ NE KG+++I NA L+EE K AV+ L+DQQMDW ++
Sbjct: 360 AQKKIDDARAENDRKIQALLDVQELNERKGHLIIENAPLIEEVKLAVQGLIDQQMDWNTI 419
Query: 408 ETLIANEQRKGNKIARIIKLPMDLPNNKITIELPKDGYSEDDST-EHHQSEADYXXXXXX 466
E LI +EQ+KGN+IA+++ LP++L NKI+++L + S+ E ++SE +
Sbjct: 420 EKLIKSEQKKGNRIAQLLNLPLNLKQNKISVKLDLSSKELNTSSDEDNESEGNTTDSSSD 479
Query: 467 XXXXXXXXXXXXXXXXFEELTXXXXXXXXXXXXXITSEKRETVLLTVDXXXXXXXXXXXX 526
+ + E + +T+D
Sbjct: 480 SDSEDMESSKERSTKSMKR------------------KSNEKINVTIDLGLSAYANATEY 521
Query: 527 XXXKKATSEKQKKVEKNAEKALKSIQQKIEKDLQKKSKESHDILKAIRTPYFFEKYYWFI 586
KK +++KQKKVEKN KA+K+I+ KI++ L+KK K+SH +LK IRTPYFFEKY WFI
Sbjct: 522 FNIKKTSAQKQKKVEKNVGKAMKNIEVKIDQQLKKKLKDSHSVLKKIRTPYFFEKYSWFI 581
Query: 587 SSESFLVLMGKSPVETDQLYAKYVNDDDIMVTNAFDVKAWILNPQKTEVPPNTLMQAGTF 646
SSE FLV+MGKSP ETDQ+Y+KY+ DDDI ++N+F+ WI NP+KTEVPPNTLMQAG
Sbjct: 582 SSEGFLVMMGKSPAETDQIYSKYIEDDDIYMSNSFNSHVWIKNPEKTEVPPNTLMQAGIL 641
Query: 647 ANSASDAWSKKIASSPWWCFAKNVTKFDDIDGSVLPVGSFRMKQPKAKNMLPPAQLVMGL 706
S+S+AWSKKI+SSPWWCFAKNV+KFD D S+LP G+FR+K +N LPPAQLVMG
Sbjct: 642 CMSSSEAWSKKISSSPWWCFAKNVSKFDGSDNSILPEGAFRLKNENDQNHLPPAQLVMGF 701
Query: 707 GLVWKVKT------------EDSEEKEGEYEQNSDLEASDDDTSHTSQPETNPVDQIDNN 754
G +WKVKT E+ EE+E E E+ + E +++ + E D+ D+N
Sbjct: 702 GFLWKVKTSGNEDNGDDDEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKEEEQQQDEDDSN 761
Query: 755 -VNVISK--EINDL----GFDVNNFDE-----VALAGEEATDGYEKLSNSDLSKGEEDFD 802
VN + K + ND F+ +N ++ ++ + +D + +D S + D
Sbjct: 762 EVNGLEKGGDSNDSTKNNSFEHDNLEKDIEKHCTISSDTDSDSGNAKAKNDNSSTQRILD 821
Query: 803 ESKTIATSIVENMNTAVXXXXXXXXXXXXXYFDQDXXXXXXXXXXXGTLKGIEREKQKKL 862
E + S++EN+N+ V Y DQD GTLKGIE+++Q+K
Sbjct: 822 E-PGVPISLIENINSNVRGKRGKLKKIQKKYADQDETERLLRLEALGTLKGIEKQQQRKK 880
Query: 863 EEMERAEKREFKKRIRKNQEQTRILQFNKSEKVEVDIPKFLNQLKTGISKDDKIADVIPV 922
EE+ + E RE +K R+ Q + + L+F K EK V+ K ++LK + K D + D+IPV
Sbjct: 881 EEIMKREVREDRKNKREKQRRLQALKFTKKEKARVNYDKHKSELKPSLDKGDVVDDIIPV 940
Query: 923 YAPWAALTKNKYKVKIQPGTAKKSKSINETLHYFLNRTVDSSEYDKDLDWPREHETIKLI 982
+APW AL K KYKVKIQPG+AKK+K++ E LHYF +R +D S D ++DWP+EHE IK +
Sbjct: 941 FAPWPALLKYKYKVKIQPGSAKKTKTLTEILHYFKSRPLDGSSTDNEMDWPQEHEMIKGL 1000
Query: 983 KTLDVVPIICSDKLKISIPGGNDKASSGRS 1012
K D+V ++C DKLK++I G + G S
Sbjct: 1001 KEQDLVLLLCVDKLKVTIAGQKSTKNGGNS 1030
>SPCC132.01c [R] KOG2030 Predicted RNA-binding protein
Length = 549
Score = 216 bits (550), Expect = 1e-55
Identities = 172/583 (29%), Positives = 271/583 (45%), Gaps = 55/583 (9%)
Query: 1 MKQRLSSLDLQLISKELENQIVGFRLRNIYNIADSNRQFLLKFGKPDSKLNVVIDCGLRV 60
MKQR S+LD+ I+ EL Q+VG RL N Y++ + R FLLKFGK D+K ++VI+ G R
Sbjct: 1 MKQRFSALDIAAIAAELREQVVGCRLNNFYDL--NARTFLLKFGKQDAKYSIVIESGFRA 58
Query: 61 HTTDFTRPIPPTPSWFVSKLRSYLKEKRLTAVKQIPNDRIIVFTFADGK--------YYL 112
H T F R P S FV+KLR ++K +RLT V Q+ DR++VFTF G YYL
Sbjct: 59 HLTKFDRENAPL-SGFVTKLRKHIKSRRLTGVSQLGTDRVLVFTFGGGANDQDPDWTYYL 117
Query: 113 VLEFFSAGNVXXXXXXXXXXXXXRVVD---DYSMKVGEFY--DMANFAEINQTSTTVPDP 167
V EFF+AGNV RVV D VG+ Y D N N++ +T+P
Sbjct: 118 VCEFFAAGNVLLLDGHYKILSLLRVVTFDKDQVYAVGQKYNLDKNNLVNDNKSQSTIPHM 177
Query: 168 KEYFENEIADWLKEADVKAKSTIVP-GEXXXXXXXXXXSVP---SIQKLLFVHAPHLSSD 223
N + D + A S P + VP S++K L + +
Sbjct: 178 TAERLNILLDEISTAYASPTSINEPLPDQQLSSSTKPIKVPKPVSLRKALTIRLGEYGNA 237
Query: 224 LIQNSLKAIGIDPSSSCLEFKHNVSVLVDLMSSLEVQANKLISTTSTRI-GYIVAHKNKL 282
LI++ L+ +DP + + + DL+++ + + L + + GYI + + L
Sbjct: 238 LIEHCLRRSKLDPLFPACQLCADETKKNDLLAAFQEADSILAAVNKPPVKGYIFSLEQAL 297
Query: 283 YDPLRDKPELEYT--FSNFHPFKPFVGDSTDVKIIEIGGMYNNTVDTFFSTIESNKYASR 340
+ + E T + +FHPF+P + K +E YN VD FFS+IE+ K R
Sbjct: 298 TNAADPQHPEECTTLYEDFHPFQPLQLVQANRKCMEFP-TYNECVDEFFSSIEAQKLKKR 356
Query: 341 IQNQDFQAQKKLDEAKNNNETIIKSLLHAQQTNEEKGNILIANANLVEEAKNAVKSLLDQ 400
++ A+++L+ AK + ++SL AQ T + + N LVE + + SLL+Q
Sbjct: 357 AHDRLATAERRLESAKEDQARKLQSLQDAQATCALRAQAIEMNPELVEAIISYINSLLNQ 416
Query: 401 QMDWQSMETLIANEQRKGNKIARIIKLPMDLPNNKITIELPKDGYSEDDSTEHHQSEADY 460
MDW +E LI +++R+ + +A I++P+ L N +T+ LP + S D+S E ++ D
Sbjct: 417 GMDWLDIEKLIQSQKRR-SPVAAAIQIPLKLIKNAVTVFLP-NPESVDNSDESSETSDDD 474
Query: 461 XXXXXXXXXXXXXXXXXXXXXXFEELTXXXXXXXXXXXXXITSEKRETVLLTVDXXXXXX 520
+ + + +D
Sbjct: 475 LDDSDDDNKVKEGKVSS-----------------------------KFIAVELDLSLGAF 505
Query: 521 XXXXXXXXXKKATSEKQKKVEKNAEKALKSIQQKIEKDLQKKS 563
++ K+ K + A KALKS Q+KIE+DL++ +
Sbjct: 506 ANARKQYELRREALIKETKTAEAASKALKSTQRKIEQDLKRST 548
>CE27042 [R] KOG2030 Predicted RNA-binding protein
Length = 899
Score = 202 bits (513), Expect = 3e-51
Identities = 226/1008 (22%), Positives = 394/1008 (38%), Gaps = 146/1008 (14%)
Query: 25 RLRNIYNIADSNRQFLLKFGKPDSKLNVVIDCGLRVHTTDFTRPIPPTPSWFVSKLRSYL 84
R+ N+Y+I N+ +L+K + D K ++ + G+R+H T P TPS F KLR ++
Sbjct: 2 RVNNVYDI--DNKTYLIKLSRTDEKAVILFESGVRLHQTFHDWPKSQTPSSFSMKLRKHI 59
Query: 85 KEKRLTAVKQIPNDRIIVFTFA--DGKYYLVLEFFSAGNVXXXXXXXXXXXXXRVVDDYS 142
+KRLT+++ + DR++ TF D + L +E + GNV RV D
Sbjct: 60 NQKRLTSIRVVGFDRLVELTFGTEDRENRLYVELYDRGNVVLTDQELTILNILRVRTDKD 119
Query: 143 MKVGEFYDMANFAEINQTSTTVPDPKEYFENEIADWLKEADVKAKSTIVPGEXXXXXXXX 202
V + + T D E + + L+ +DVK + +P
Sbjct: 120 TSVR--------WAVREKFTFSDD--ENSAAKTGEKLEISDVKLAISGIPDGKEEQFGRI 169
Query: 203 XXSVPS----IQKLLFVHAPHLSSDLIQNSLKAIGIDPSSSCLEFKHNVSVLVDLMSSLE 258
+ + K + I+NS + I F N+ ++ + E
Sbjct: 170 LAQITKCGNPVTKEILARCQVKWDTKIKNSSEISEI--------FDGNLHKFEEIQKATE 221
Query: 259 VQANKLISTTSTRIGYIVAHKNKLYDPLRDKPELEYTFSNFHPFKPFVGDSTDVKIIEIG 318
+ ++ I Y +++ P+ ++ + +F+P + K+ +
Sbjct: 222 DVWDTVLHKPLGFISY-----SEVLSPISTPIQI---YQDFNP----ISMEFTAKLSKEL 269
Query: 319 GMYNNTVDTFFSTIESNKYASRIQNQDFQAQKKLDEAKNNNETIIKSLLHAQQTNEEKGN 378
+ VD F+S IE+ K + N + QA KKL+ + + + I++L Q E+ N
Sbjct: 270 SSFCEAVDEFYSRIETQKQEQKAVNMEKQALKKLENVEKDQKDRIEALQLTQSQREQMAN 329
Query: 379 ILIANANLVEEAKNAVKSLLDQQMDWQSMETLIANEQRKGNKIARIIKLPMDLPNNKITI 438
+I N LVE+A ++S L Q WQ++E + G+ +A+ I NN+ +
Sbjct: 330 RIILNTELVEKALLLIRSALANQFSWQTIEEMRKTAAGNGDPVAKSID-SFKFENNEFMM 388
Query: 439 ELPKDGYSEDDSTEHHQSEADYXXXXXXXXXXXXXXXXXXXXXXFEELTXXXXXXXXXXX 498
L D Y DD E + D
Sbjct: 389 SL-ADPY--DDEAEVLKVPIDIS------------------------------------- 408
Query: 499 XXITSEKRETVLLTVDXXXXXXXXXXXXXXXKKATSEKQKKVEKNAEKALKSIQQKIEKD 558
+ + VD +KA Q+K + E Q KI +
Sbjct: 409 ---LNASKNAQRHFVDKKSAAEKVKKTVASSEKAIKNAQEKAKSTLE------QVKIVVE 459
Query: 559 LQKKSKESHDILKAIRTPYFFEKYYWFISSESFLVLMGKSPVETDQLYAKYVNDDDI-MV 617
++K K +FEK+ WFISSE F+V+ G+ + + L KY+ +DI M
Sbjct: 460 VKKSRKS-----------MWFEKFRWFISSEGFIVVAGRDAQQNELLVKKYLRPNDIYMH 508
Query: 618 TNAFDVKAWILNPQK--TEVPPNTLMQAGTFANSASDAWSKKIASSPWWCFAKNVTKFDD 675
+ + ++ + E+PP TL +A A S+AW + +S WW V++
Sbjct: 509 ADVRGASSVVIRNKSFDAEIPPKTLTEAAQMAVCYSNAWEATVTASAWWVHPDQVSRTAP 568
Query: 676 IDGSVLPVGSFRMKQPKAKNMLPPAQLVMGLGLVWKVKTED------SEEKEGEYEQNSD 729
G LP GSF ++ KN +PP+QLVMGLG+++++ E E+ + E + D
Sbjct: 569 -TGEYLPSGSFMIR--GKKNFMPPSQLVMGLGILFRMDEESIERHVALEKSKAEEKSEED 625
Query: 730 LEASDDDTSHTSQPETNPVDQIDNNVNVISKEINDLGFDVNNFDEVALAGEEATDGYEKL 789
E +D T++ NP + D ++ K G + + + + +
Sbjct: 626 GEKMEDSPKKTAKIPENPAEN-DEFPDIEVKIARPSGEEAEEMTLIEVGPKNPVKNSQNA 684
Query: 790 SNSDLSKGEEDFDESKTIATSIVENMNTAVXXXXXXX--------XXXXXXYFDQ-DXXX 840
L K E KT + E + + Y DQ D
Sbjct: 685 QK--LPKNAE-----KTTQLYLEEKLKEQLGGPSAKTQKRRQRKEKLAKMKYKDQTDDDL 737
Query: 841 XXXXXXXXGTLKGIEREKQKKLEEMERAEK----REFKKRI---RKNQEQTRILQFNKSE 893
K +E+ +++ +E E++EK EFK +I R+N ++ +
Sbjct: 738 ELHKELLKPQGKIVEKVEERPVERPEKSEKPVKIEEFKPKIQEKRENPDEEAEEPEEDDK 797
Query: 894 KVEVDIPKFLNQLKTGISKDDKIADVIPVYAPWAALTKNKYKVKIQPGTAKKSKSINETL 953
+ ++ L L +D + +PV AP++AL+ KY+VKI PG K+ K+ +
Sbjct: 798 EANLEELSILTTLTAQPLDEDTLLFAVPVVAPYSALSTYKYRVKITPGIGKRGKATKSAI 857
Query: 954 HYFLNRTVDSSEYDKDLDWPREHETIKLIKTLDVVPIICSDKLKISIP 1001
F + D R+ IK + + D K++IS P
Sbjct: 858 ELFTRQRTD-----------RQAALIKSLLSDDSASRNLPTKVRISAP 894
>SPCC1322.17c [R] KOG2030 Predicted RNA-binding protein
Length = 648
Score = 193 bits (491), Expect = 1e-48
Identities = 176/701 (25%), Positives = 289/701 (41%), Gaps = 115/701 (16%)
Query: 363 IKSLLHAQQTNEEKGNILIANANLVEEAKNAVKSLLDQQMDWQSMETLIANEQRKGNKIA 422
++SL AQ T + + N LVE + + SLL+Q MDW +E LI +++R+ + +A
Sbjct: 6 LQSLQDAQATCALRAQAIEMNPELVEAIISYINSLLNQGMDWLDIEKLIQSQKRR-SPVA 64
Query: 423 RIIKLPMDLPNNKITIELPKDGYSEDDSTEHHQSEADYXXXXXXXXXXXXXXXXXXXXXX 482
I++P+ L N +T+ LP S D+S E ++ D
Sbjct: 65 AAIQIPLKLIKNAVTVFLPNPE-SVDNSDESSETSDDDLDDSDDDNKVKEGKVSS----- 118
Query: 483 FEELTXXXXXXXXXXXXXITSEKRETVLLTVDXXXXXXXXXXXXXXXKKATSEKQKKVEK 542
+ + + +D ++ K+ K +
Sbjct: 119 ------------------------KFIAVELDLSLGAFANARKQYELRREALIKETKTAE 154
Query: 543 NAEKALKSIQQKIEKDLQKKSKESHDILKAIRTPYFFEKYYWFISSESFLVLMGKSPVET 602
A KALKS Q+KIE+DL++ + + R +FFEK++WFISSE +LVL G+ +
Sbjct: 155 AASKALKSTQRKIEQDLKRSTTADTQRILLGRKTFFFEKFHWFISSEGYLVLGGRDAQQN 214
Query: 603 DQLYAKYVNDDDIMVTNAFDVKAWILNPQKT---EVPPNTLMQAGTFANSASDAWSKKIA 659
+ L+ KY N DI V + I+ K +PPNTL QAG+ A ++S AW K
Sbjct: 215 ELLFQKYCNTGDIFVCADLPKSSIIIVKNKNPHDPIPPNTLQQAGSLALASSKAWDSKTV 274
Query: 660 SSPWWCFAKNVTKFDDIDGSVLPVGSFRMKQPKAKNMLPPAQLVMGLGLVWKVKTEDSE- 718
S WW V+K G +LP GSF ++ KN LPP L+MG G++W++ + SE
Sbjct: 275 ISAWWVRIDEVSKLAP-TGEILPTGSFAIR--AKKNYLPPTVLIMGYGILWQLDEKSSER 331
Query: 719 ------EKEGEYEQNSDLEASDDDTSHTSQPETNPV----------------DQIDNNVN 756
E E Q E + TS TS+ V D ++++
Sbjct: 332 RKARRLEMEVVETQGKVSELKMEGTSVTSEDNIQDVVSEVSYNEDTNNQSTPDTTGSDIH 391
Query: 757 VISKEINDLGFDVNNFDEVA-----------------------LAGEEATDGYEKLSNSD 793
++S++ G V +V+ ++ E+ATD L+
Sbjct: 392 IVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDATDPQTILAILK 451
Query: 794 LSKGEE-----DFDESKTIATSIVENMNTAVXXXXXXXXXXXXXYFDQDXXXXXXXXXXX 848
K ++ + + S I ++ N+ T +
Sbjct: 452 QKKAKKKHAAREMEISSQIPSNDSSNVQTPTAESEIE---------EDGVSEPISAEVIE 502
Query: 849 GTLKGIEREKQKKLEEMERAEKREFKKRIRKNQEQTRILQFNKSEKVEVDIPKFLNQLKT 908
+ E E +K L +R EK+ K + QE R L +I ++ L
Sbjct: 503 DQSRNSEAENEKGLSTEQRDEKKHAKVESFQRQEMPRSL--------FEEIFFAIDSLTP 554
Query: 909 GISKDDKIADVIPVYAPWAALTKNKYKVKIQPGTAKKSKSINETLHYFLNRTVDSSEYDK 968
+ D + + +P +AP+ A+TK KVK+ PGT K K+ E++ YF+ + SS
Sbjct: 555 NPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLPKSS---- 610
Query: 969 DLDWPREHETIKLIKTLDVVPIICSDKLKISI-PGGNDKAS 1008
+E ++ +K ++V I +LK+ GN K S
Sbjct: 611 -----KEAAYLENLKDGEIVAPISVSRLKMVFGSSGNTKKS 646
>7301276 [R] KOG2030 Predicted RNA-binding protein
Length = 972
Score = 187 bits (475), Expect = 7e-47
Identities = 197/787 (25%), Positives = 330/787 (41%), Gaps = 137/787 (17%)
Query: 273 GYIVAHKNKLYDPLRDKPELEYTFSN--FHPFKPFVGDSTDVKIIEIGGMYNNTVDTFFS 330
GYI+ K + + +E+ F N FHP+ + + E + VD F+S
Sbjct: 258 GYIIQVKE---EKPTENGTVEFFFRNIEFHPYLFIQFKNFEKATFE---SFMEAVDEFYS 311
Query: 331 TIESNKYASRIQNQDFQAQKKLDEAKNNNETIIKSLLHAQQTNEEKGNILIANANLVEEA 390
T ES K + Q+ +A KKL KN++ ++ L Q + +K ++ +N +LV+ A
Sbjct: 312 TQESQKIDMKTLQQEREALKKLSNVKNDHAKRLEELTKVQDVDRKKAELITSNQSLVDNA 371
Query: 391 KNAVKSLLDQQMDWQSMETLIANEQRKGNKIARIIKLPMDLPNNKITIELPKDGYSEDDS 450
AV+S + Q+ W + L+ Q G+ +A IK + L N I++ L D Y D+
Sbjct: 372 IRAVQSAIASQLSWPDIHELVKEAQANGDAVASSIK-QLKLETNHISLML-SDPYDNDED 429
Query: 451 TEHHQSEADYXXXXXXXXXXXXXXXXXXXXXXFEELTXXXXXXXXXXXXXITSEKRETVL 510
+ E +
Sbjct: 430 DDLKDPE--------------------------------------------------VTV 439
Query: 511 LTVDXXXXXXXXXXXXXXXKKATSEKQKKVEKNAEKALKSIQQKIEKDLQKKSKESHDIL 570
+ VD K++ ++K+KK ++KALKS ++K ++ L K+ + +I+
Sbjct: 440 VDVDLALSAWANARRYYDMKRSAAQKEKKTVDASQKALKSAERKTQQTL-KEVRTISNIV 498
Query: 571 KAIRTPYFFEKYYWFISSESFLVLMGKSPVETDQLYAKYVNDDDIMVTNAFDVKAWIL-- 628
KA R ++FEK+YWFISSE++LV+ G+ + + + +Y+ DI V + ++
Sbjct: 499 KA-RKVFWFEKFYWFISSENYLVIGGRDAQQNELIVKRYMRPKDIYVHAEIQGASSVIIQ 557
Query: 629 NPQKTEVPPNTLMQAGTFANSASDAWSKKIASSPWWCFAKNVTKFDDIDGSVLPVGSFRM 688
NP E+PP TL++AG+ A S S AW K+ ++ +W + V+K G L GSF +
Sbjct: 558 NPTGEEIPPKTLLEAGSMAISYSVAWDAKVVTNSYWVTSDQVSKTAP-TGEYLATGSFMI 616
Query: 689 KQPKAKNMLPPAQLVMGLGLVWKVK---------------TEDSE------EKEGEYEQN 727
+ KN LP L MGL L++K++ ED + E E E++
Sbjct: 617 R--GKKNFLPSCHLTMGLSLLFKLEDSFIERHLGERKVRSLEDDQIDPNVKENEVEHDLL 674
Query: 728 SDLEASDDDTSHTSQPETNPVDQIDNNVNVISKEINDLGFDVNNFDEVALAGEEATDGYE 787
SD E +D + + S+P +N +I N K +D G + D V EE + E
Sbjct: 675 SDNEDADSNI-NLSEPSSN--TEITAFPNTEVKIEHDTGRIIVRSDSVNPEIEETKES-E 730
Query: 788 KLSNSDLSKGEEDFDESKTIATSIVENMNTAVXXXXXXXXXXXXXYFDQDXXXXXXXXXX 847
+ + L K D +E+ I + Q+
Sbjct: 731 VVLDKILKK--TDDEETTIILAGPSRKKQVSAKKTKEDKARAKQEAAKQEVPPVSSEPKN 788
Query: 848 XGTLKGIEREKQKKLEEM---ERAEKREFKKRIRKN--------------QEQTRILQFN 890
+K ++ K KK+++ + E+RE + I K+ ++ ++
Sbjct: 789 PSQVKRGQKGKLKKMKQKYKDQDDEEREIRMMILKSSGKEKPQASADKVVEKSESTKEYV 848
Query: 891 KSEK-------VEVD----IP-----KFLNQLKTGISKDDKIADVIPVYAPWAALTKNKY 934
K EK VE+D +P LN L + D++ IPV AP+ AL K+
Sbjct: 849 KPEKSAAPKNPVELDDADEVPVGGDVDVLNSLTGQPHEGDELLFAIPVVAPYQALQNYKF 908
Query: 935 KVKIQPGTAKKSKSINETLHYFLNRTVDSSEYDKDLDWPREHETIKLIKTLDVVPIICSD 994
KVK+ PGT K+ K+ L+ F S+ RE + +K IK + I
Sbjct: 909 KVKLTPGTGKRGKAAKLALNIFAKEKSCSA---------REKDLLKSIKEESLARNI-PG 958
Query: 995 KLKISIP 1001
K+K+S P
Sbjct: 959 KVKLSAP 965
Score = 54.7 bits (130), Expect = 7e-07
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 25/125 (20%)
Query: 1 MKQRLSSLDLQLISKELENQIVGFRLRNIYNIADSNRQFLLKF-GKPDSKLNVVIDCGLR 59
MK R ++ D+ EL+ ++VG+R+ IY++ N+ +L + G + N+
Sbjct: 1 MKTRFNTFDIICGVAELQ-KLVGWRVNQIYDV--DNKTYLFRMQGTGAVEKNMA------ 51
Query: 60 VHTTDFTRPIPPTPSWFVSKLRSYLKEKRLTAVKQIPNDRIIVFTF--ADGKYYLVLEFF 117
PS F KLR +LK KRL V+Q+ +DRI+ F F D Y+++LE +
Sbjct: 52 -------------PSGFSMKLRKHLKNKRLEKVQQMGSDRIVDFQFGTGDAAYHVILELY 98
Query: 118 SAGNV 122
GNV
Sbjct: 99 DRGNV 103
>At5g49930 [R] KOG2030 Predicted RNA-binding protein
Length = 1080
Score = 183 bits (465), Expect = 1e-45
Identities = 198/842 (23%), Positives = 356/842 (41%), Gaps = 110/842 (13%)
Query: 1 MKQRLSSLDLQLISKELENQIVGFRLRNIYNIADSNRQFLL--KFGKPDS----KLNVVI 54
+K R+++ D+ K L+ +++G R N+Y+I+ F L G +S K+ +++
Sbjct: 2 VKVRMNTADVAAEVKCLK-RLIGMRCSNVYDISPKTYMFKLLNSSGITESGESEKVLLLM 60
Query: 55 DCGLRVHTTDFTRPIPPTPSWFVSKLRSYLKEKRLTAVKQIPNDRIIVFTFADGK--YYL 112
+ G+R+HTT + R TPS F KLR +++ +RL V+Q+ DRIIVF F G +Y+
Sbjct: 61 ESGVRLHTTAYVRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIIVFQFGLGANAHYV 120
Query: 113 VLEFFSAGNVXXXXXXXXXXXXXRVVDD------------YSMKVGEFYDMANFAEINQT 160
+LE ++ GN+ R D Y +++ ++ +++ Q
Sbjct: 121 ILELYAQGNIILTDSEYMIMTLLRSHRDDNKGFAIMSRHRYPIEICRVFERTTVSKL-QE 179
Query: 161 STTVPDPKEYFENEIADWLKEADVKAKSTIVPGEXXXXXXXXXXSVPSIQKLLFVHAPHL 220
S T K++ +I KE + K G+ ++ +I + P L
Sbjct: 180 SLTAFVLKDHDAKQIEP--KEQNGGKKG----GKSNDSTGAKQYTLKNILGDALGYGPQL 233
Query: 221 SSDLIQNSLKAIGIDPSSSCLEFK----HNVSVLVDLMSSLEVQANKLISTTSTRIGYIV 276
S +I ++ G+ P++ E K + + +LV + E +I+ GYI+
Sbjct: 234 SEHIILDA----GLVPTTKLSEDKKLDDNEIQLLVQAVIVFEDWLEDIINGQKVPEGYIL 289
Query: 277 AHKNKLYDPLRDKPELEYTFSNFHPFKPFVGDSTDVKIIEIGGMYNNTVDTFFSTIESNK 336
K L + E + F + + ++ E ++ +D F+S IES +
Sbjct: 290 MQKQILANDTTS--ESGGVKKMYDEFCSILLNQFKSRVYEKFETFDAALDEFYSKIESQR 347
Query: 337 YASRIQNQDFQAQKKLDEAKNNNETIIKSLLHAQQTNEEKGNILIANANLVEEAKNAVKS 396
+ + ++ A KL++ + + E ++ L ++ N V+ A AV+
Sbjct: 348 SEQQQKAKEDSASLKLNKIRQDQENRVQILKKEVNHCVNMAELIEYNLEDVDAAILAVRV 407
Query: 397 LLDQQMDWQSMETLIANEQRKGNKIARIIKLPMDLPNNKITIELPKDGYSEDDSTEHHQS 456
L + M W + ++ E++ GN +A +I + L N +T+ L + DD +
Sbjct: 408 ALAKGMGWDDLARMVKEEKKLGNPVAGVIDR-LYLEKNCMTLLLCNNLDEMDDDEK---- 462
Query: 457 EADYXXXXXXXXXXXXXXXXXXXXXXFEELTXXXXXXXXXXXXXITSEKRETVLLTVDXX 516
+ EK E VD
Sbjct: 463 -------------------------------------------TVPVEKVE-----VDLS 474
Query: 517 XXXXXXXXXXXXXKKATSEKQKKVEKNAEKALKSIQQKIEKDLQKKSKESHDILKAIRTP 576
KK KQ+K EKA ++ ++K L ++ + + +R
Sbjct: 475 LSAHGNARRWYEMKKKQETKQEKTVSAHEKAFRAAEKKTRHQLSQEKVVA--TISHMRKV 532
Query: 577 YFFEKYYWFISSESFLVLMGKSPVETDQLYAKYVNDDDIMV-TNAFDVKAWILNPQKTE- 634
++FEK+ WFISSE++LV+ G+ + + + +Y++ D+ V + ++ K E
Sbjct: 533 HWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNHKPEQ 592
Query: 635 -VPPNTLMQAGTFANSASDAWSKKIASSPWWCFAKNVTKFDDIDGSVLPVGSFRMKQPKA 693
VPP TL QAG F S AW KI +S WW + VTK G L VGSF ++
Sbjct: 593 NVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVTKTAP-TGEYLTVGSFMIR--GK 649
Query: 694 KNMLPPAQLVMGLGLVWKVKTEDSEEKEGEYEQNSDLEASDDDTSHTSQPETNPVDQIDN 753
KN LPP L+MG GL++++ E + E +D T P+ + + +N
Sbjct: 650 KNFLPPHPLIMGFGLLFRLDESSLGAHLNERRVRGEEEGMNDVVMETHAPDEHSDTESEN 709
Query: 754 NVNVISKEINDLGFDVNNFDEVALAGEEATDGYEKLSNSDLSKGEEDFDESKTIATSIVE 813
+ +N++ V+ EV L E +T + S+ D+S +E+ ATS +E
Sbjct: 710 ------EAVNEV---VSASGEVDLQ-ESSTALSQDTSSLDMSSSGIT-EENVASATSQLE 758
Query: 814 NM 815
++
Sbjct: 759 DL 760
>Hs22048155 [R] KOG2030 Predicted RNA-binding protein
Length = 414
Score = 155 bits (391), Expect = 4e-37
Identities = 123/448 (27%), Positives = 208/448 (45%), Gaps = 46/448 (10%)
Query: 1 MKQRLSSLDLQLISKELENQIVGFRLRNIYNIADSNRQFLLKFGKPDSKLNVVIDCGLRV 60
MK R S++DL+ + EL ++G R+ N+Y++ N+ +L++ KPD K ++++ G+R+
Sbjct: 1 MKSRFSTIDLRAVLAELNASLLGMRVNNVYDV--DNKTYLIRLQKPDFKATLLLESGIRI 58
Query: 61 HTTDFTRPIPPTPSWFVSKLRSYLKEKRLTAVKQIPNDRIIVFTFA--DGKYYLVLEFFS 118
HTT+F P PS F K R +LK +RL + KQ+ DRI+ F F + Y+L++E +
Sbjct: 59 HTTEFEWPKNMMPSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYD 118
Query: 119 AGNVXXXXXXXXXXXXXRVVDDYSMKVGEFYDMANFAEINQTSTTVPDPKEYFENEIADW 178
GN+ V+ DY Y + N D + + + +
Sbjct: 119 RGNI--------------VLTDYE------YVILNILRFR------TDEADDVKFAVRER 152
Query: 179 LKEADVKAKSTIVPGEXXXXXXXXXXSVPSIQKLLFVHAPHLSSDLIQNSLKAIGIDPS- 237
+A ++ E ++++L P+ LI++ L G +
Sbjct: 153 YPLDHARAAEPLLTLERLTEIVASAPKGELLKRVLNPLLPY-GPALIEHCLLENGFSGNV 211
Query: 238 --SSCLEFKHNVSVLVDLMSSLEVQANKLISTTS--TRIGYIVAHKNKLYDPLRDKP-EL 292
LE K VLV L +A + TTS + GYI+ + DKP E
Sbjct: 212 KVDEKLETKDIEKVLVSLQ-----KAEDYMKTTSNFSGKGYIIQKREIKPSLEADKPVED 266
Query: 293 EYTFSNFHPFKPFVGDSTDVKIIEIGGMYNNTVDTFFSTIESNKYASRIQNQDFQAQKKL 352
T+ FHPF + IE ++ VD F+S IE K + Q+ QA KKL
Sbjct: 267 ILTYEEFHPF--LFSQHSQCPYIEFES-FDKAVDEFYSKIEGQKIDLKALQQEKQALKKL 323
Query: 353 DEAKNNNETIIKSLLHAQQTNEEKGNILIANANLVEEAKNAVKSLLDQQMDWQSMETLIA 412
D + ++E +++L AQ+ ++ KG ++ N +V+ A V+S L Q+DW + ++
Sbjct: 324 DNVRKDHENRLEALQQAQEIDKLKGELIEMNLQIVDRAIQVVRSALANQIDWTEIGLIVK 383
Query: 413 NEQRKGNKIARIIKLPMDLPNNKITIEL 440
Q +G+ +A IK + L N +T+ L
Sbjct: 384 EAQAQGDPVASAIK-ELKLQTNHVTMLL 410
>ECU06g1390 [R] KOG2030 Predicted RNA-binding protein
Length = 648
Score = 75.1 bits (183), Expect = 5e-13
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 18/192 (9%)
Query: 531 KATSEKQKKVEKNAEKALKSIQQKIEKDLQKKSKESHDILKAIRTPYFFEKYYWFISSES 590
K EK ++ + E+ LK I KIE K R PY+FEK+++F SS+
Sbjct: 383 KKLEEKIRRTRDSLEEVLKRIAPKIESK------------KITRAPYWFEKFHFFFSSDG 430
Query: 591 FLVLMGKSPVETDQLYAKYVNDDDIMVTNAFDVKAWILNPQKTEVPPNTLMQAGTFANSA 650
LV+ GK+ + + L K++ D+ + + I+ + T+ T+ +A + A
Sbjct: 431 VLVIGGKNAQQNEILVKKHLEPGDLYFHSDMHGSSSIIVKKATQ---KTIEEAASMALCM 487
Query: 651 SDAWSKKIASSPWWCFAKNVTKFDDIDGSVLPVGSFRMKQPKAKNMLPPAQLVMGLGLVW 710
S W + S W+ + V+K G L GSF + KN + ++ GLGL++
Sbjct: 488 SKCWEANVVSPVWYVYGDQVSKTAP-SGEYLKKGSFMI--TGKKNYVECHRIEYGLGLLF 544
Query: 711 KVKTEDSEEKEG 722
+V + E+ EG
Sbjct: 545 RVSEDIEEQLEG 556
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,809,867
Number of Sequences: 60738
Number of extensions: 2305877
Number of successful extensions: 9824
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9765
Number of HSP's gapped (non-prelim): 27
length of query: 1027
length of database: 30,389,216
effective HSP length: 116
effective length of query: 911
effective length of database: 23,343,608
effective search space: 21266026888
effective search space used: 21266026888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)