ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI7364 good A KOG1609 RNA processing and modification Protein involved in mRNA turnover and stability
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI7364 2569061 2566293 -923
(923 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL030c [A] KOG1609 Protein involved in mRNA turnover and stability 512 e-145
SPBC14F5.07 [A] KOG1609 Protein involved in mRNA turnover and st... 108 4e-23
At4g34100 [A] KOG1609 Protein involved in mRNA turnover and stab... 73 2e-12
CE17111 [A] KOG1609 Protein involved in mRNA turnover and stability 70 2e-11
7292227 [A] KOG1609 Protein involved in mRNA turnover and stability 62 3e-09
Hs5032167 [A] KOG1609 Protein involved in mRNA turnover and stab... 59 3e-08
Hs22051177 [A] KOG1609 Protein involved in mRNA turnover and sta... 59 3e-08
>YIL030c [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 1319
Score = 512 bits (1319), Expect = e-145
Identities = 272/634 (42%), Positives = 382/634 (59%), Gaps = 38/634 (5%)
Query: 6 AQRELDGRLDAQLGRPQPVE---GEVQED------GINAQPAVVLENEDGQPTAILNLNL 56
AQ+ R +A + P P + G V +D + PA ++ GQ ++NL L
Sbjct: 408 AQQNAINRPNAPVFIPPPAQNRAGNVDQDEQDFGAAVGVPPAQANPDDQGQGPLVINLKL 467
Query: 57 DYKYLPSYFSLVFSVIGGYLFISYALATLVGYLLNFIYFRVVIIMLNGVIVSAERLNIPE 116
+ +YF + YL ISY T +G+ L IYF + ++L G+
Sbjct: 468 KLLNVIAYFIIAVVFTAIYLAISYLFPTFIGFGLLKIYFGIFKVILRGLCHLYYLSGAHI 527
Query: 117 YNQKLIETFSLVSYVENWINGTVLMPIVSYYQGYMKGTAKHTMLVRMLAPASTYATFIVL 176
L + V +WI+ ++ I+ Y GY + T KH++ +R L +TY T + +
Sbjct: 528 AYNGLTKLVPKVDVAMSWISDHLIHDIIYLYNGYTENTMKHSIFIRALPALTTYLTSVSI 587
Query: 177 CCCIPELLSRGHSKKLPLKNSLKRTIFKFSYIIKCTLKVLGLFTLELAGFPILAGFLIDV 236
C L+SRG+ ++ + N +R IF+ + +KCT KV LF +ELAGFPILAG ++D
Sbjct: 588 VCASSNLVSRGYGRENGMSNPTRRLIFQILFALKCTFKVFTLFFIELAGFPILAGVMLDF 647
Query: 237 XXXXXXXXXXXXXTFVPSFCSFWPPMTFIIYWAIGTVYMYHFAQYVGMVRQYIIRPGVLF 296
+VPS C+ WPP + +YW IGT+YMY FA+Y+GM+R+ IIRPGVLF
Sbjct: 648 SLFCPILASNSRMLWVPSICAIWPPFSLFVYWTIGTLYMYWFAKYIGMIRKNIIRPGVLF 707
Query: 297 FIRSPDDPNIKLLQDSLIYPMKLQLSRLALSMAIYTAFILVGFGFHTRLLFPYILHSELL 356
FIRSP+DPNIK+L DSLI+PM +QLSRL LSM IY FI++GFGFHTR+ FP++L S LL
Sbjct: 708 FIRSPEDPNIKILHDSLIHPMSIQLSRLCLSMFIYAIFIVLGFGFHTRIFFPFMLKSNLL 767
Query: 357 PMKHGLSTLIKPNSMFS------IAVIAGTYLILSKNRVIDAYVRQYWVFVFNICCRKLR 410
+ KP S+ S + + T IL + + + +YW +F +C RKLR
Sbjct: 768 SVPEA----YKPTSIISWKFNTILLTLYFTKRILESSSYVKPLLERYWKTIFKLCSRKLR 823
Query: 411 LSSFILGKDSPTERGHVIYRNFYYKWFVPNKAKLSNLELYSHPKSLDETYTLFKTIPDVH 470
LSSFILGKD+PTERGH++YRN +YK+ A+ SN EL++ PK+L++ LF + DVH
Sbjct: 824 LSSFILGKDTPTERGHIVYRNLFYKYIAAKNAEWSNQELFTKPKTLEQAEELFGQVRDVH 883
Query: 471 AYFVPDGTMMRVPASDIISKKYAQLLFVPVTKDDKLLKPLDIEKIKERQKRNAGEFGYLE 530
AYFVPDG +MRVP+SDI+S+ Y Q +FVPVTKDDKLLKPLD+E+IKER KR AGEFGYL+
Sbjct: 884 AYFVPDGVLMRVPSSDIVSRNYVQTMFVPVTKDDKLLKPLDLERIKERNKRAAGEFGYLD 943
Query: 531 KQPTEFDEYKVVYVPPHFTFTYSLLIVFIWIFASLLFTAVLLIS--------NFAGLPII 582
+Q TE+D+Y +VYVPP F Y L+ +W+FAS+L V IS +F LP++
Sbjct: 944 EQNTEYDQYYIVYVPPDFRLRYMTLLGLVWLFASILMLGVTFISQALINFVCSFGFLPVV 1003
Query: 583 TGLQLLLNAVIPPAMKFQNELYESVKPLNLLSVS 616
+LLL +N++Y + K L+ +S S
Sbjct: 1004 ---KLLLGE--------RNKVYVAWKELSDISYS 1026
>SPBC14F5.07 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 1242
Score = 108 bits (270), Expect = 4e-23
Identities = 89/363 (24%), Positives = 165/363 (44%), Gaps = 56/363 (15%)
Query: 218 LFTLELAGFPILAGFLIDVXXXXXXXXXXXXXTFVPSFCSFWPPMTFIIYWAIGTVYMYH 277
+F++EL FPI G L+ + + + +P + + W IG +M+
Sbjct: 667 IFSIELVVFPIFCGILLSMCLIGTFKKLAAENLL--NVMTVYPAQSIFLAWFIGITFMFE 724
Query: 278 FAQYVGMVRQYIIRPGVLFFIRSPDDPNIKLLQDSLIYPMKLQLSRLALSMAIYTAFIL- 336
FA ++ MVR+ I+RPGVL+F+R P+DP +++ L PM QL ++ S +Y AFI+
Sbjct: 725 FAVFISMVRK-IVRPGVLYFLRDPNDPQFHPIREILEKPMLFQLKKIGFSAILYFAFIIG 783
Query: 337 -VGFGFH----TRLLFPYILHSELLPMKHGLSTLIKPNSMFSIAVIAGTYLILSKNRVID 391
VG H T ++FP ++ + P + ++ ++ + L K +
Sbjct: 784 CVGSVIHLLKSTGIIFPIEFTTKPAVFE-------APIDLLALEILIFLSIKLFKPLEL- 835
Query: 392 AYVRQYWVFVFNICCRKLRLSSFILGKDSPTERGHVIYRNF-YYKWFVPNKAKLSNLELY 450
R +W + + CR LRLSS+++G+ E G+ + F + + + + N +
Sbjct: 836 --TRSFWRTLVSTFCRCLRLSSYVMGQRYSDEEGYYPKQYFSFLRRIISKPSDTENQDDG 893
Query: 451 SHPKSLDETYTLFKTIPDVHAYFVPDGTMMRVPASDIISKKYAQLLFVPVTKDDKLLKPL 510
K+ + FV DG + P+ D++ + +L +PVT++
Sbjct: 894 DKQKAKKD--------------FVQDGFFLWCPSKDVVPVRQGAML-IPVTENG-----Y 933
Query: 511 DIEKIKERQKRNAGEFGYLEKQPTEFDEYKVVYVPPHFTFTYSLLIVFIWIFASLLFTAV 570
+I K++ + NA +Y + Y P +F L++F WI ++L+ V
Sbjct: 934 EIFGEKKKVEENA--------------DYTITYAPSNFYKRLIALLLFCWICSTLV--TV 977
Query: 571 LLI 573
LL+
Sbjct: 978 LLV 980
>At4g34100 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 1051
Score = 72.8 bits (177), Expect = 2e-12
Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 213 LKVLGLFTLELAGFPILAGFLIDVXXXXXXXXXXXXXTFVPSFCSFWPPMTFIIYWAIGT 272
+KV L +EL FP++ G+ +DV F S P + +++W +G
Sbjct: 489 IKVAFLLVIELGVFPLMCGWWLDVCTVRMFGKTMSHRV---QFLSISPLASSLVHWVVGI 545
Query: 273 VYMYHFAQYVGMVRQYIIRPGVLFFIRSPDDPNIKLLQDSLIYPMKLQLSRLALSMAIYT 332
+YM + +V ++R ++RPGVL+F+R P DPN +D + P+ R+ LS+A+Y
Sbjct: 546 MYMLQISIFVSLLRG-VLRPGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYG 604
Query: 333 AFILV 337
+ I++
Sbjct: 605 SLIVM 609
>CE17111 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 1017
Score = 69.7 bits (169), Expect = 2e-11
Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 14/160 (8%)
Query: 200 RTIFKFSYIIKCTLKVLGLFTLELAGFPILAGFLIDVXXX--XXXXXXXXXXTFVPSFCS 257
+ +++F I+ +KV L LE+ FP++ G +DV TF +
Sbjct: 487 KMMYRFLGIMFLIIKVFLLVFLEIGFFPVMCGCWMDVCTLPLFNITLSQRIATFATA--- 543
Query: 258 FWPPMTFIIYWAIGTVYMYHFAQYVGMVRQYIIRPGVLFFIRSPDDPNIKLLQDSLIYPM 317
P M+ ++W +G VY+++ A +V ++R+ I+RPGVL+F+R+ +DP+ +Q+ + P
Sbjct: 544 --PFMSIFLHWMVGMVYVFYSASFVILLRE-ILRPGVLWFMRNLNDPDFNPIQEMIDLPF 600
Query: 318 KLQLSRLALSMAIYTAFILVGFGFHTRLLFPYILHSELLP 357
RL +S ++ + IL+ F P + S L+P
Sbjct: 601 TRHFRRLVVSTTLFFSTILLIF------YIPLNIISSLIP 634
>7292227 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 1007
Score = 62.4 bits (150), Expect = 3e-09
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 200 RTIFKFSYIIKCTLKVLGLFTLELAGFPILAGFLIDVXXXXXXXXXXXXXTFVPSFCSFW 259
R + F + +KV L LE+ P++ G+ +D+ SF +
Sbjct: 351 RRVCWFIGLCYIVVKVSLLSVLEIGVLPLICGWWLDICSLPLLDASLKDRK--ESFKAA- 407
Query: 260 PPMTFIIYWAIGTVYMYHFAQYVGMVRQYIIRPGVLFFIRSPDDPNIKLLQDSLIYPMKL 319
P + ++W G VY+Y+FA +V ++R+ ++RPGVL+ R+ +DP+ +Q+ + P+
Sbjct: 408 PGTSLFVHWMFGMVYVYYFAAFVSLLRE-VLRPGVLWIFRNVNDPDFSPIQEMIHVPIVR 466
Query: 320 QLSRLALSMAIYTAFILVGFGFHTRLL 346
+ RL S I+ +L+ R+L
Sbjct: 467 HIRRLVASAMIFGFAVLLMLWLPIRIL 493
>Hs5032167 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 490
Score = 59.3 bits (142), Expect = 3e-08
Identities = 24/81 (29%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 266 IYWAIGTVYMYHFAQYVGMVRQYIIRPGVLFFIRSPDDPNIKLLQDSLIYPMKLQLSRLA 325
++W +G VY+++FA ++ ++R+ ++RPGVL+F+R+ +DP+ +Q+ + P+ L R
Sbjct: 3 LHWLVGMVYVFYFASFILLLRE-VLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFI 61
Query: 326 LSMAIYTAFILVGFGFHTRLL 346
LS+ ++ + +L+ R++
Sbjct: 62 LSVIVFGSIVLLMLWLPIRII 82
>Hs22051177 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 490
Score = 59.3 bits (142), Expect = 3e-08
Identities = 24/81 (29%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 266 IYWAIGTVYMYHFAQYVGMVRQYIIRPGVLFFIRSPDDPNIKLLQDSLIYPMKLQLSRLA 325
++W +G VY+++FA ++ ++R+ ++RPGVL+F+R+ +DP+ +Q+ + P+ L R
Sbjct: 3 LHWLVGMVYVFYFASFILLLRE-VLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFI 61
Query: 326 LSMAIYTAFILVGFGFHTRLL 346
LS+ ++ + +L+ R++
Sbjct: 62 LSVIVFGSIVLLMLWLPIRII 82
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.328 0.142 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,100,913
Number of Sequences: 60738
Number of extensions: 2069761
Number of successful extensions: 6006
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5984
Number of HSP's gapped (non-prelim): 14
length of query: 923
length of database: 30,389,216
effective HSP length: 116
effective length of query: 807
effective length of database: 23,343,608
effective search space: 18838291656
effective search space used: 18838291656
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)