ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI7368 good A KOG1609 RNA processing and modification Protein involved in mRNA turnover and stability
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI7368 2570445 2569573 -291
(291 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL030c [A] KOG1609 Protein involved in mRNA turnover and stability 254 8e-68
SPBC14F5.07 [A] KOG1609 Protein involved in mRNA turnover and st... 90 4e-18
At4g34100 [A] KOG1609 Protein involved in mRNA turnover and stab... 83 4e-16
7292227 [A] KOG1609 Protein involved in mRNA turnover and stability 82 7e-16
CE17111 [A] KOG1609 Protein involved in mRNA turnover and stability 77 3e-14
7294955 [A] KOG1609 Protein involved in mRNA turnover and stability 59 8e-09
ECU06g0830 [A] KOG1609 Protein involved in mRNA turnover and sta... 59 1e-08
Hs12383066 [A] KOG1609 Protein involved in mRNA turnover and sta... 57 2e-08
Hs8923613 [A] KOG1609 Protein involved in mRNA turnover and stab... 57 3e-08
Hs21450751 [A] KOG1609 Protein involved in mRNA turnover and sta... 56 7e-08
CE20322 [A] KOG1609 Protein involved in mRNA turnover and stability 53 6e-07
At2g02960 [A] KOG1609 Protein involved in mRNA turnover and stab... 49 8e-06
7290900 [S] KOG3053 Uncharacterized conserved protein 49 8e-06
>YIL030c [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 1319
Score = 254 bits (650), Expect = 8e-68
Identities = 125/271 (46%), Positives = 173/271 (63%), Gaps = 12/271 (4%)
Query: 22 TCRICMLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAGMVCSICNHPI 81
TCRIC E T DNPLFHPCKC+GSIKY+H+ CL+EW+ SK++D++KPGA + C IC++PI
Sbjct: 38 TCRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDICHYPI 97
Query: 82 AFQTLYDESMPEKIPLLLLLKHSVFKIFGKLNHYFKFTLIAFLFFIGIPLSWNIWGKLYT 141
F+T+Y E+MPEKIP LLL S+ F K L A L+ IG+PL WN++GKLYT
Sbjct: 98 QFKTIYAENMPEKIPFSLLLSKSILTFFEKARLALTIGLAAVLYIIGVPLVWNMFGKLYT 157
Query: 142 ATVDDFSFPSNNKWYINLIYGFERNIPKNPTTTDILYQLVINYRFSLLQILMVLIVHAIA 201
+D S P + +LIYG++++ TT I YQL+ N+ F+ LQ +M++I+H
Sbjct: 158 MMLDG-SSPYPGDFLKSLIYGYDQSATPELTTRAIFYQLLQNHSFTSLQFIMIVILHIAL 216
Query: 202 YLQYDMVVREPIFNKMILHKIGPRFSKQELAMQSLRERFPNMDPNDISMLINALNRQRQD 261
Y QYDM+VRE +F+KM+ HKIGPR S ++L + L+ERFP MD + L + R
Sbjct: 217 YFQYDMIVREDVFSKMVFHKIGPRLSPKDLKSR-LKERFPMMDDRMVEYLAREM---RAH 272
Query: 262 DPNEDDTSEDE-------QEQNNFIVNENND 285
D N + D + NN ++N ND
Sbjct: 273 DENRQEQGHDRLNMPAAAADNNNNVINPRND 303
>SPBC14F5.07 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 1242
Score = 89.7 bits (221), Expect = 4e-18
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 23 CRICMLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWL-QSKHVDVTKPGAGMVCSICNHPI 81
CR+C EG D+PLFHPCKC GSI+Y+HQ CL+EWL SK C +C
Sbjct: 8 CRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTH---------CELCKAKF 58
Query: 82 AFQTLYDESMPEKIPLLLLLKHSVFKIFGKLNHYFKFTLIAFLFFIGIPLSWNIWGKLYT 141
F +Y ESMP IP +L + + ++ + + L F + + +PL + L
Sbjct: 59 EFTKVYSESMPRTIPFTILCRKLASTLKQRVIFFTRVLLTFFCWTVLLPLIFKHVWNLNF 118
Query: 142 ATVDDFSFPSNNKWY 156
D ++ + NK +
Sbjct: 119 KIGDTYTIHARNKTF 133
>At4g34100 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 1051
Score = 83.2 bits (204), Expect = 4e-16
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 12 YEDKHAGNFPTCRICMLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAG 71
Y D CRIC G +DNPL +PC C GSIK++HQ CL++WL +
Sbjct: 57 YVDDDEDEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSN--------A 108
Query: 72 MVCSICNHPIAFQTLYDESMPEKIPLLLLLKHSVFKIFGKLNHYFKFTLIAFLFFIGIP- 130
C +C HP +F +Y ++ P ++P + K L + + + + ++ + IP
Sbjct: 109 RQCEVCKHPFSFSPVYADNAPSRLPFQEFVVGIAMKACHVLQFFLRLSFVLSVWLLTIPF 168
Query: 131 LSWNIWGKLYTAT 143
+++ IW + T
Sbjct: 169 ITFWIWRLAFVRT 181
>7292227 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 1007
Score = 82.4 bits (202), Expect = 7e-16
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 23 CRICMLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAGMVCSICNHPIA 82
CR+C E D PLF+PC C GSIKYIHQ CL+ W++ H + C +C++ +
Sbjct: 10 CRVCRCEAQPDRPLFYPCICTGSIKYIHQDCLMLWMRYSHKE--------YCELCSYSFS 61
Query: 83 FQTLYDESMPEKIPLLLLLKHSVFKIFGKLNHYFKFTLIAFLFFIGIPLS 132
FQ +Y MP +P+ +L + + + +TL+ +F +PLS
Sbjct: 62 FQPIYAPDMPRVLPIKDVLVGLMSAVLEGARCWLHYTLVGLAWFGVVPLS 111
>CE17111 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 1017
Score = 77.0 bits (188), Expect = 3e-14
Identities = 56/256 (21%), Positives = 114/256 (43%), Gaps = 45/256 (17%)
Query: 23 CRICMLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAGMVCSICNHPIA 82
CR+C ++ L++PC C GSIKY+HQ CL+EWL+ + VC +CNH +
Sbjct: 53 CRVCR---GNEGSLYYPCLCTGSIKYVHQECLVEWLKYSKKE--------VCELCNHKYS 101
Query: 83 FQTLYDESMPEKIPLLLLLKHSVFKIFGKLNHYFKFTLIAFLFFIGIPL-SWNIWGKLYT 141
FQ +Y + MP+ +P+L +L+ + + + +T++ + +PL + I+ ++
Sbjct: 102 FQPIYRQDMPKALPILEILRGVLISGAIMVRTWIIYTIVMTTWLGIVPLTAARIYNCIFY 161
Query: 142 ATVDDFSFPSNNKWYINLIYGFERNIPKNPTTTDILYQLVINYRFSLLQILMVLIVHAIA 201
+ D N P + + ++ + SLL ++ V ++
Sbjct: 162 LSFHDIV-----------------NAPFQLFKAEHFFNDIL--KGSLLLLVFVCTFISLV 202
Query: 202 YLQYDMVVREPIFNKMILHKIGPRFSKQELAMQSLRERFPNMDPNDISMLINALNRQRQD 261
+L+ +++ P H + + E + E + D ++ + + +
Sbjct: 203 WLREQIIIGGP------QHFLNIEAEENEGEDDVVNENNESSDESE--------DDEEDE 248
Query: 262 DPNEDDTSEDEQEQNN 277
D EDD +DE+E+ +
Sbjct: 249 DDEEDDDEDDEEEEED 264
>7294955 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 617
Score = 58.9 bits (141), Expect = 8e-09
Identities = 25/63 (39%), Positives = 31/63 (48%), Gaps = 8/63 (12%)
Query: 23 CRICMLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAGMVCSICNHPIA 82
CRIC E NPL PC C GS+KY+HQ CL +WL + + C +C P
Sbjct: 43 CRICHCESDPQNPLLTPCYCSGSLKYVHQACLQQWLTASETN--------SCELCKFPFI 94
Query: 83 FQT 85
T
Sbjct: 95 MHT 97
>ECU06g0830 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 817
Score = 58.5 bits (140), Expect = 1e-08
Identities = 25/81 (30%), Positives = 46/81 (55%), Gaps = 8/81 (9%)
Query: 22 TCRICMLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAGMVCSICNHPI 81
+C+IC + L +PC+C G+IKYIH+ CL+ W++ TK C IC++
Sbjct: 14 SCKICHTGDIRGDELCNPCRCSGTIKYIHRECLMSWMECSG---TKK-----CDICHYEY 65
Query: 82 AFQTLYDESMPEKIPLLLLLK 102
F+ +Y P+ +P+ ++++
Sbjct: 66 KFKDIYKPDTPQILPVSIIIR 86
>Hs12383066 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 704
Score = 57.4 bits (137), Expect = 2e-08
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 13 EDKHAGNFPTCRIC-MLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAG 71
ED CRIC M +S N L PCKC GS++Y+HQ C+ +WLQ+K + A
Sbjct: 542 EDSEEEEGDLCRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAV 601
Query: 72 MVCSICNHPI 81
C +C +
Sbjct: 602 TTCELCKEKL 611
>Hs8923613 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 272
Score = 57.0 bits (136), Expect = 3e-08
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 25/137 (18%)
Query: 23 CRICMLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAGMVCSICNHPIA 82
CRIC EG ++PL PC+C G+++++HQ CL +W++S C +C +
Sbjct: 63 CRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDT--------RCCELCKYDFI 114
Query: 83 FQT-LYDESMPEKIPLLLLLKHSVFKIFGKLNHYFKFTLIAFLFFIGIP----------- 130
+T L EK+ + + +F H T + + ++ I
Sbjct: 115 METKLKPLRKWEKLQMTTSERRKIF--CSVTFHVIAITCVVWSLYVLIDRTAEEIKQGND 172
Query: 131 ---LSWNIWGKLYTATV 144
L W W KL +
Sbjct: 173 NGVLEWPFWTKLVVVAI 189
>Hs21450751 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 291
Score = 55.8 bits (133), Expect = 7e-08
Identities = 22/63 (34%), Positives = 33/63 (51%), Gaps = 8/63 (12%)
Query: 23 CRICMLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAGMVCSICNHPIA 82
CRIC EG ++PL PC C GS+ ++HQ CL +W++S C +C +
Sbjct: 80 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT--------RCCELCKYEFI 131
Query: 83 FQT 85
+T
Sbjct: 132 MET 134
>CE20322 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 521
Score = 52.8 bits (125), Expect = 6e-07
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 19 NFPTCRICML--EGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAGMVCSI 76
N P CRIC S++PL PC+C GS++Y+H CL+ WL + +P +C +
Sbjct: 190 NEPLCRICHCCWPPDSNDPLISPCRCSGSLQYVHVSCLMHWLDISSRKLHRPA---ICEL 246
Query: 77 C 77
C
Sbjct: 247 C 247
>At2g02960 [A] KOG1609 Protein involved in mRNA turnover and stability
Length = 271
Score = 48.9 bits (115), Expect = 8e-06
Identities = 25/72 (34%), Positives = 35/72 (47%), Gaps = 9/72 (12%)
Query: 9 DHNYEDKHAGNFPTCRICMLEGTSDNPLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKP 68
DH+ E++ CRIC E +N L PC C GS+KY H+ C+ W K
Sbjct: 29 DHDDENEPLIVSGECRICSDESPVEN-LESPCACSGSLKYAHRKCVQRWCNEK------- 80
Query: 69 GAGMVCSICNHP 80
++C IC+ P
Sbjct: 81 -GNIICEICHQP 91
>7290900 [S] KOG3053 Uncharacterized conserved protein
Length = 323
Score = 48.9 bits (115), Expect = 8e-06
Identities = 22/58 (37%), Positives = 34/58 (57%), Gaps = 6/58 (10%)
Query: 23 CRICMLEGTSDN---PLFHPCKCKGSIKYIHQLCLIEWLQSKHVDVTKPGAGMVCSIC 77
C IC L G D+ HPC+C+G+ K++H+ CL W+ K ++ PGA + C+ C
Sbjct: 34 CWIC-LRGDEDHRRRDWVHPCRCRGTNKWVHEACLSRWIDEK--EMLSPGAPVTCTQC 88
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.140 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,862,682
Number of Sequences: 60738
Number of extensions: 897535
Number of successful extensions: 3969
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3945
Number of HSP's gapped (non-prelim): 18
length of query: 291
length of database: 30,389,216
effective HSP length: 105
effective length of query: 186
effective length of database: 24,011,726
effective search space: 4466181036
effective search space used: 4466181036
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)