LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees Genome Syntenizer

Sulfolobus solfataricus P2 >SSO0291 putative DNA-directed RNA polymerase subunit M MIVVKFCPKCNSMMVPKKSNGKNVYRCTKCGYEKEVPETTIVVTSKVKHSIKEKTLVLEEEEMPSGAQKIKGVLCPSCKN DEAYFWILQTRRADEPPTRFYKCTKCGKVWREYE

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
Go to S. solfataricus P2 Data Base

^__________ GenBank id: 15897234 Gene name: rpoM-1 COG: K COG1594 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS Taxon: 273057 Lineage: Archaea: TACK group: Crenarchaeota: Thermoprotei: Sulfolobales: Sulfolobaceae: Sulfolobus: Sulfolobus solfataricus: Sulfolobus solfataricus P2
^__________


SSO0291
hypothetical
1
rpoM-1
DNA-directed RNA polymerase, subunit M
Transcription
1
single function
2.7.7.6

Possible in-frame shift with SSO5576. Similar to carboxy-end of RPOM_SULAC, but most other thermophilic genes are the same size
RNA polymerase and transcription factors
04/22/01 00:00:00
terminal
status:good K COG1594 Transcription DNA-directed RNA polymerase subunit M/Transcription elongation factor TFIIS

CROSS REFERENCES:
pI: 9,07
MW: 13205,47
GenBank: 13813433
SCOP superfamily: => 
SCOP assignment: 75-114 2.4e-14 Zinc beta-ribbon