Acidobacteria clones COG statistics

Clone Coding
Genes
Genes
with COG
Number of
COG Categories
Number of
COG funtions
COG functional categories COG functions
LUAcid_AD106_G4 35 28 10 27 C Energy production and conversion
E Amino acid transport and metabolism
F Nucleotide transport and metabolism
H Coenzyme transport and metabolism
I Lipid transport and metabolism
J Translation, ribosomal structure and biogenesis
K Transcription
L Replication, recombination and repair
R General function prediction only
S Function unknown
COG0247 Fe-S oxidoreductase
COG0277 FAD/FMN-containing dehydrogenases
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases
COG1757 Na+/H+ antiporter
COG0405 Gamma-glutamyltransferase
COG0015 Adenylosuccinate lyase
COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase
COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain
COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis
COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III
COG0024 Methionine aminopeptidase
COG0162 Tyrosyl-tRNA synthetase
COG0621 2-methylthioadenine synthetase
COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
COG0632 Holliday junction resolvasome, DNA-binding subunit
COG0817 Holliday junction resolvasome, endonuclease subunit
COG2255 Holliday junction resolvasome, helicase subunit
COG2801 Transposase and inactivated derivatives
COG0612 Predicted Zn-dependent peptidases
COG0820 Predicted Fe-S-cluster redox enzyme
COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I
COG0217 Uncharacterized conserved protein
LUAcid_AD248_D7 26 22 8 21 C Energy production and conversion
E Amino acid transport and metabolism
F Nucleotide transport and metabolism
G Carbohydrate transport and metabolism
J Translation, ribosomal structure and biogenesis
K Transcription
R General function prediction only
S Function unknown
COG0247 Fe-S oxidoreductase
COG0277 FAD/FMN-containing dehydrogenases
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases
COG1413 FOG: HEAT repeat
COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
COG0015 Adenylosuccinate lyase
COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase
COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain
COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
COG4993 Glucose dehydrogenase
COG0024 Methionine aminopeptidase
COG0162 Tyrosyl-tRNA synthetase
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
COG0612 Predicted Zn-dependent peptidases
COG0820 Predicted Fe-S-cluster redox enzyme
COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I
COG1262 Uncharacterized conserved protein
LUAcid_AD370_D1 31 24 12 24 C Energy production and conversion
E Amino acid transport and metabolism
G Carbohydrate transport and metabolism
H Coenzyme transport and metabolism
I Lipid transport and metabolism
J Translation, ribosomal structure and biogenesis
L Replication, recombination and repair
M Cell wall/membrane/envelope biogenesis
P Inorganic ion transport and metabolism
R General function prediction only
S Function unknown
V Defense mechanisms
COG0554 Glycerol kinase
COG2421 Predicted acetamidase/formamidase
COG0002 Acetylglutamate semialdehyde dehydrogenase
COG0405 Gamma-glutamyltransferase
COG0548 Acetylglutamate kinase
COG2303 Choline dehydrogenase and related flavoproteins
COG0477 Permeases of the major facilitator superfamily
COG0001 Glutamate-1-semialdehyde aminotransferase
COG0416 Fatty acid/phospholipid biosynthesis enzyme
COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)
COG0441 Threonyl-tRNA synthetase
COG0629 Single-stranded DNA-binding protein
COG1533 DNA repair photolyase
COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase
COG1091 dTDP-4-dehydrorhamnose reductase
COG0725 ABC-type molybdate transport system, periplasmic component
COG0456 Acetyltransferases
COG1399 Predicted metal-binding, possibly nucleic acid-binding protein
COG2041 Sulfite oxidase and related enzymes
COG2945 Predicted hydrolase of the alpha/beta superfamily
COG4146 Predicted symporter
COG1359 Uncharacterized conserved protein
COG2331 Uncharacterized protein conserved in bacteria
COG0577 ABC-type antimicrobial peptide transport system, permease component
LUAcid_KM3_A5 25 21 6 18 C Energy production and conversion
E Amino acid transport and metabolism
F Nucleotide transport and metabolism
G Carbohydrate transport and metabolism
J Translation, ribosomal structure and biogenesis
R General function prediction only
COG0277 FAD/FMN-containing dehydrogenases
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases
COG1757 Na+/H+ antiporter
COG0405 Gamma-glutamyltransferase
COG0015 Adenylosuccinate lyase
COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase
COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain
COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
COG0477 Permeases of the major facilitator superfamily
COG0162 Tyrosyl-tRNA synthetase
COG0251 Putative translation initiation inhibitor, yjgF family
COG0621 2-methylthioadenine synthetase
COG0612 Predicted Zn-dependent peptidases
COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I
COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase
LUAcid_KM3_B4 22 11 8 11 E Amino acid transport and metabolism
G Carbohydrate transport and metabolism
H Coenzyme transport and metabolism
J Translation, ribosomal structure and biogenesis
M Cell wall/membrane/envelope biogenesis
Q Secondary metabolites biosynthesis, transport and catabolism
R General function prediction only
S Function unknown
COG2303 Choline dehydrogenase and related flavoproteins
COG2133 Glucose/sorbosone dehydrogenases
COG4833 Predicted glycosyl hydrolase
COG4993 Glucose dehydrogenase
COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C
COG0162 Tyrosyl-tRNA synthetase
COG1696 Predicted membrane protein involved in D-alanine export
COG1228 Imidazolonepropionase and related amidohydrolases
COG1881 Phospholipid-binding protein
COG2391 Predicted transporter component
COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain
LUAcid_KM3_B8D2 36 29 10 28 C Energy production and conversion
E Amino acid transport and metabolism
F Nucleotide transport and metabolism
G Carbohydrate transport and metabolism
J Translation, ribosomal structure and biogenesis
K Transcription
L Replication, recombination and repair
M Cell wall/membrane/envelope biogenesis
R General function prediction only
S Function unknown
COG0247 Fe-S oxidoreductase
COG0277 FAD/FMN-containing dehydrogenases
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases
COG1413 FOG: HEAT repeat
COG1757 Na+/H+ antiporter
COG0405 Gamma-glutamyltransferase
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
COG0015 Adenylosuccinate lyase
COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase
COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain
COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
COG4993 Glucose dehydrogenase
COG0024 Methionine aminopeptidase
COG0162 Tyrosyl-tRNA synthetase
COG0621 2-methylthioadenine synthetase
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
COG0632 Holliday junction resolvasome, DNA-binding subunit
COG0817 Holliday junction resolvasome, endonuclease subunit
COG2255 Holliday junction resolvasome, helicase subunit
COG3468 Type V secretory pathway, adhesin AidA
COG0612 Predicted Zn-dependent peptidases
COG0820 Predicted Fe-S-cluster redox enzyme
COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I
COG0217 Uncharacterized conserved protein
COG1262 Uncharacterized conserved protein
LUAcid_KM3_D9 30 21 7 20 C Energy production and conversion
E Amino acid transport and metabolism
F Nucleotide transport and metabolism
H Coenzyme transport and metabolism
J Translation, ribosomal structure and biogenesis
R General function prediction only
S Function unknown
COG0247 Fe-S oxidoreductase
COG0277 FAD/FMN-containing dehydrogenases
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases
COG1757 Na+/H+ antiporter
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases
COG0015 Adenylosuccinate lyase
COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase
COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain
COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis
COG0162 Tyrosyl-tRNA synthetase
COG0251 Putative translation initiation inhibitor, yjgF family
COG0621 2-methylthioadenine synthetase
COG0612 Predicted Zn-dependent peptidases
COG0820 Predicted Fe-S-cluster redox enzyme
COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I
COG3391 Uncharacterized conserved protein
LUAcid_KM3_F8 27 14 7 14 C Energy production and conversion
E Amino acid transport and metabolism
G Carbohydrate transport and metabolism
H Coenzyme transport and metabolism
I Lipid transport and metabolism
M Cell wall/membrane/envelope biogenesis
R General function prediction only
COG1625 Fe-S oxidoreductase, related to NifB/MoaA family
COG0260 Leucyl aminopeptidase
COG0591 Na+/proline symporter
COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily
COG1109 Phosphomannomutase
COG0001 Glutamate-1-semialdehyde aminotransferase
COG0113 Delta-aminolevulinic acid dehydratase
COG0294 Dihydropteroate synthase and related enzymes
COG0558 Phosphatidylglycerophosphate synthase
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
COG0457 FOG: TPR repeat
COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily)
COG2936 Predicted acyl esterases
LUAcid_KM3_G1 24 17 6 16 C Energy production and conversion
E Amino acid transport and metabolism
F Nucleotide transport and metabolism
J Translation, ribosomal structure and biogenesis
R General function prediction only
S Function unknown
COG0247 Fe-S oxidoreductase
COG0277 FAD/FMN-containing dehydrogenases
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases
COG0405 Gamma-glutamyltransferase
COG2755 Lysophospholipase L1 and related esterases
COG0015 Adenylosuccinate lyase
COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase
COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain
COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
COG0162 Tyrosyl-tRNA synthetase
COG0251 Putative translation initiation inhibitor, yjgF family
COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III
COG1262 Uncharacterized conserved protein
LUAcid_KM4_H7 33 27 10 27 F Nucleotide transport and metabolism
H Coenzyme transport and metabolism
I Lipid transport and metabolism
J Translation, ribosomal structure and biogenesis
K Transcription
L Replication, recombination and repair
O Posttranslational modification, protein turnover, chaperones
P Inorganic ion transport and metabolism
R General function prediction only
S Function unknown
COG0015 Adenylosuccinate lyase
COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase
COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain
COG0150 Phosphoribosylaminoimidazole (AIR) synthetase
COG0151 Phosphoribosylamine-glycine ligase
COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN
COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases
COG1182 Acyl carrier protein phosphodiesterase
COG0162 Tyrosyl-tRNA synthetase
COG0621 2-methylthioadenine synthetase
COG0583 Transcriptional regulator
COG3145 Alkylated DNA repair protein
COG0555 ABC-type sulfate transport system, permease component
COG1495 Disulfide bond formation protein DsbB
COG0038 Chloride channel protein EriC
COG1118 ABC-type sulfate/molybdate transport systems, ATPase component
COG1613 ABC-type sulfate transport system, periplasmic component
COG4208 ABC-type sulfate transport system, permease component
COG0431 Predicted flavoprotein
COG0612 Predicted Zn-dependent peptidases
COG0820 Predicted Fe-S-cluster redox enzyme
COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I
COG1408 Predicted phosphohydrolases
COG3826 Uncharacterized protein conserved in bacteria