Pyrococcus abyssi     re-annotation: please read carefully
	Coloring schemes:
	COG function categories for genes are as determined at NCBI COGs
	J K L COG Functional categories D O M N P T R G C E F H I S
	Domain patterns are extracted from BLASTN vs. GenBank nr Database (Sep. 01). Cut-off expect limit is P <= 1e-10
	Domain Pattern coloring  No hit  Pyro no Archaea  Archaea and Eucarya only  Pyro only  Archaea and Bacteria only  Archaea then Eucarya  Archaea only  Archae then Bacteria
	BLASTP hits in GenBank nr (Sep. 01) Absolute cut-off expect limit for this set is P <= 1.0
	GenBank NR Blast Hits coloring   High hit: P <= 1e -20  No hit Medium Hit Medium hit : 1e -20 < P <=1e -05  High Hit Low Hit Low hit : 1e -05 < P <=1.0
	BLASTP hits in SWISSPROT ( v 40) Absolute cut-off expect limit for this set is P <= 10.0
	SwissProt Blast Hits coloring   High hit: P <= 1e -10  No hit Medium Hit Medium hit : 1e -10 < P <=1.0  High Hit Low Hit Low hit : 1.0 < P <=10.0
	Other Databases:
	All orfs have been matched against PROSITE version 14 with gcg Motifs tool All orfs have been scored against BLOCKS database with BLIMPS tool (BLocks IMProved Searcher). Blocks Database (http://blocks.fhcrc.org) see Henikoff & al. Nucleic Acids Research, 19:23,p. 6565-6572. (1991)
	Other information:
	- Full Domain pattern: gives access to abbreviated and expanded domain pattern as determined from the BLASTP vs GenBank nr G= Bacteria E= Eucarya V= virus o= other (often non-natural sequence, eg. plasmid) *= undetermined - GenBankXref : for each gene, acces to all annotations available so far in GenBank DataBase, with cross reference indexes
	Re-annotation: change current annotation for a gene, add new annoation for an orf:
	For authorized people only (contact Y. Zivanovic) The lower part of the middle panel (see "Annotate here:") allows to enter new information for a gene. 4 categories are available ( Description - Gene Name - Gene Product - EC number - Comment ). Only 2 things are mandatory : - Gene identifier (found in "ORF informatio" field) and - Description Type in your data, press "Submit" , review carefully, then press "Confirm"