Similarity searches are performed with RPS-BLAST (BLAST 2.2.x NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402) Submit your sequence and select the CDD DataBase you want to match.
MESVSQLVSNCASRGIPAQQFLNFYHELINEKYGASLNAGNEERESESRKQVFEDVSRELVQAFHSSEDAILLAEYMVHL#LFINYDTYLSSALLPQVYSIQSETLLMHFHSLAASFIGKLEDKLIKEQMRQDLSTFILSSCLQCDMSTFNNQLFISIVKY#LQALLTLIDDSIDIEMDKDNLKLAVTSLLTRTTKLNRILGKRIGREFETKLNLSLSAKLAMVNSPQIFSPSSGATRFAGT#PGSTKPMDLALSATSSTSNKIQDLKLIRFYKNLWLNNKIHHFNTSDSQLLEKFSSINSRLSSSLAEEHLIQEQITDLIET#TYTSFAQLVNNKLYHQTNTNFNLLERKYVHFITKRLPLIIKDFLPQNPSVIVNSLQNIDEKVKKAIKSYYSNKNDSPERN#EDLFDDYSGNNFDIRHDFLKNLIMLNLRPPSVLNEFLREDQMVDVKTLKTDDSLVIVNSQGVQEKVSDVQEALKSLIADL#DIENQYVANGNNYRFSPDNALLKLLMSFDTIAPTKQVEIANAFLQILQKATDTSDLKTLGKVLWILTSNVGHSTTSMLCC#ISPGPFINAVVKFLEKQQRNSTVSSSDEPDFDSLHSYVTYGMALSFVVFLKTTYDFDIEPFIQNFEESYTLKFLSSIEDI#SDIFVLQNESAEGSKLYLQNWLRDLFINGSISDSQMKNTNVKDLINLIPFIFKQSVIAVQAGVVSNILNLTSGFEYFLQP#FLMPGLIKIMFWLEYYLHSLKNNNPPSQILSSCWELINILICPPSLDDDAKGLHFMILKLNCVRLLNVLYLFRNDESNSS#QYGVYAAHESIDPKLEAVISKLEYIASISNIYDVDTKCYETTKEVYSHGTLFSNKIPVTNEHPIDIIMTNQLNSFWNLHS#STYYNYDYLLELIKLITPEKFLVDSIRTLTYKVAAYGIPGVQGKLNTSAIEQVANFLAYFMILHDVQTEEQRLALLNYIE#SGVIVSKETETKQEPETKLDDDFDMLFGEPFNNTLDETSLVFSQNEQPKSYSSSVFPVLHDTFGVVIAEMKKRYDTSKNN#GLLSEAAYENATTFIRKYVENLKNSVV# ATGGAATCTGTGAGTCAATTGGTAAGTAATTGTGCCAGTAGAGGTATTCCTGCGCAACAATTTCTCAACTTTTATCATGA#ACTTATCAATGAAAAATACGGTGCTAGCCTAAATGCCGGTAACGAAGAGCGTGAGTCGGAGTCCAGAAAGCAGGTGTTTG#AGGATGTCTCTCGAGAACTTGTCCAAGCGTTTCATTCTAGTGAAGATGCTATACTTTTAGCGGAGTATATGGTACATTTA#TTATTCATAAATTATGATACATATTTGAGTTCGGCGCTCTTACCACAGGTTTACTCGATCCAATCGGAGACTCTTTTAAT#GCATTTCCATAGTCTTGCAGCATCTTTCATTGGAAAACTAGAAGACAAGTTGATCAAAGAACAAATGAGGCAAGATTTAT#CTACATTCATCTTATCATCATGTCTTCAGTGCGACATGAGTACTTTCAATAACCAGCTCTTTATCTCTATTGTCAAGTAT#TTGCAGGCACTCTTGACTTTGATAGATGATAGTATTGACATCGAAATGGACAAAGATAATTTAAAGCTAGCTGTAACTTC#TTTGTTAACAAGGACTACTAAATTGAATAGAATCTTAGGGAAGCGTATTGGACGAGAATTTGAGACAAAATTAAACCTTT#CACTGAGTGCAAAGCTCGCTATGGTGAATTCACCTCAAATATTCTCTCCTTCAAGTGGTGCTACCCGCTTTGCAGGAACT#CCTGGCTCTACCAAGCCGATGGATCTCGCCCTTTCTGCTACATCTTCAACCTCCAATAAGATACAAGATTTGAAACTGAT#ACGATTTTACAAAAACTTATGGCTCAACAATAAGATTCATCATTTCAACACTTCAGATTCTCAATTGCTCGAGAAATTCA#GCTCAATAAATTCTCGGTTGTCGTCTTCCCTAGCGGAAGAGCACTTGATTCAAGAGCAAATCACTGATCTAATTGAAACC#ACATATACGTCATTCGCTCAGTTGGTTAATAATAAATTATATCATCAAACCAACACAAATTTCAACCTTCTTGAAAGAAA#ATACGTTCATTTCATTACAAAAAGATTACCATTGATTATCAAAGACTTCTTACCACAAAATCCATCGGTAATTGTCAACT#CACTACAAAACATCGATGAAAAGGTTAAAAAAGCTATTAAATCTTATTATTCGAATAAAAATGATTCCCCTGAGAGAAAT#GAGGACTTATTTGATGATTATTCCGGGAACAATTTTGATATTAGACATGATTTCTTGAAAAATCTGATAATGTTGAATCT#AAGGCCGCCCAGTGTATTGAACGAGTTCTTGCGAGAAGATCAAATGGTGGATGTCAAAACATTGAAAACGGATGACTCGT#TGGTCATTGTGAACTCACAGGGCGTGCAAGAAAAAGTGAGCGACGTCCAAGAAGCTTTAAAGTCACTAATCGCAGATTTG#GACATAGAAAACCAATACGTTGCAAATGGCAATAACTACCGTTTCTCTCCAGATAACGCACTCCTGAAGCTTCTTATGTC#ATTCGACACTATAGCACCCACCAAGCAGGTTGAAATCGCAAACGCCTTTCTTCAGATACTACAAAAGGCTACAGACACCT#CGGACTTAAAAACACTAGGAAAAGTTCTTTGGATACTAACGTCAAATGTGGGACATTCTACCACTTCAATGCTCTGCTGC#ATCTCGCCAGGTCCATTTATCAATGCAGTAGTTAAGTTCCTAGAAAAGCAACAAAGGAATTCCACAGTATCGAGCTCTGA#TGAACCAGATTTTGATTCTCTTCATAGTTATGTCACATATGGGATGGCTCTATCATTTGTTGTTTTTCTGAAGACTACAT#ATGACTTTGATATTGAACCTTTTATTCAAAATTTCGAAGAATCATACACTTTGAAGTTCCTTTCTTCAATTGAAGACATT#TCGGATATCTTTGTGTTACAGAATGAATCGGCAGAAGGATCCAAATTATATCTTCAAAACTGGTTACGAGACCTTTTCAT#TAATGGATCAATCAGTGACTCTCAAATGAAGAACACCAATGTTAAAGATCTCATCAATCTTATTCCATTTATCTTTAAAC#AAAGCGTAATTGCTGTCCAGGCAGGTGTTGTGTCAAATATTCTGAATTTGACTAGCGGCTTTGAATATTTCTTACAACCG#TTCCTTATGCCAGGATTGATAAAAATTATGTTCTGGTTAGAGTACTATCTACATTCTTTGAAAAATAATAATCCGCCTTC#TCAGATATTGAGTTCCTGTTGGGAGCTTATCAACATATTGATATGTCCGCCTTCATTAGACGATGATGCAAAAGGTTTGC#ATTTCATGATCTTGAAACTTAATTGCGTCAGACTGCTCAACGTTTTGTACTTATTCAGGAATGATGAAAGTAACTCCAGT#CAGTATGGTGTATACGCAGCACATGAGTCGATTGATCCTAAGTTGGAGGCAGTGATATCCAAGTTGGAATACATTGCCTC#AATTTCTAACATTTATGACGTTGACACTAAATGCTATGAAACCACAAAAGAAGTATACTCGCATGGTACTCTGTTCTCCA#ATAAAATACCAGTTACTAATGAACACCCCATTGATATTATAATGACGAACCAACTTAATTCATTTTGGAATCTACACAGT#AGTACGTACTATAACTATGATTATCTGCTGGAGTTGATAAAACTTATTACGCCGGAGAAGTTTTTAGTGGATTCGATAAG#AACATTGACCTATAAGGTGGCAGCATATGGTATTCCTGGTGTTCAAGGGAAACTAAACACATCAGCTATTGAACAGGTAG#CAAACTTCCTCGCTTACTTCATGATTTTGCATGATGTTCAAACGGAAGAACAAAGACTTGCCCTTCTTAATTACATAGAA#TCTGGTGTCATTGTCTCAAAGGAAACTGAAACTAAACAAGAACCAGAAACTAAGTTAGATGATGACTTTGACATGTTGTT#CGGTGAACCGTTCAACAATACCTTGGATGAAACGTCCTTAGTGTTTTCGCAAAACGAGCAACCAAAGTCCTACAGCTCAT#CAGTCTTTCCTGTGTTGCATGACACTTTTGGTGTGGTAATAGCAGAAATGAAAAAGAGATATGATACTAGTAAAAACAAT#GGACTCCTCTCCGAAGCAGCGTATGAAAATGCAACGACATTTATAAGAAAATATGTAGAGAATTTGAAAAATTCGGTTGT#A#
Display full alignements in /Graphics Before submission you must select at least one Conserved Domain DataBase . Pairwise Master-slave with identities Master-slave no identities Flat master-slave Flat master-slave, no identities Master-slave no identities & blunt ends Flat master-slave, no identities & blunt ends Output Alignment: (options not available with blastx and tblastx)
Expect value (E)
[Real]
Query sequence type
Protein Nucleic
Filter query sequence (DUST with blastn, SEG with others)
True False
X dropoff value for gapped alignment (in bits)
[Integer]
Number of one-line descriptions (V)
Number of alignments to show (B)
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