BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA01FM1.SCF screened BAC_end
(873 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig534 890 0.0
>3x_Contig534
Length = 2494
Score = 890 bits (449), Expect = 0.0
Identities = 504/521 (96%), Gaps = 1/521 (0%)
Strand = Plus / Plus
Query: 48 tacaagaagtgaagtactcttcacttacgtttaagtcaacggttctcaaatatgattggc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tacaagaagtgaagtactcttcacttacgtttaagtcaacggttctcaaatatgattggc 456
Query: 108 cggatatttcaaatgtccgggtaatactgttgatcttttccctcaaaattttcattgaat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cggatatttcaaatgtccgggtaatactgttgatcttttccctcaaaattttcattgaat 516
Query: 168 tgaaccatttcaataagatgaatcgaactaaagcatcaagtcaagagtcaattgatagaa 227
||||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgaaccaaa-catgaagagatatcgaactaaagcatcaagtcaagagtcaattgatagaa 575
Query: 228 gattacaaggtctcacacttctagcttggttggtttagtgtattcaatagataaaagtcg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gattacaaggtctcacacttctagcttggttggtttagtgtattcaatagataaaagtcg 635
Query: 288 agcagcaatgatttccagagtccaatctttagtttcttctttgacacacaagacacaatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agcagcaatgatttccagagtccaatctttagtttcttctttgacacacaagacacaatc 695
Query: 348 actgttgaccaagaccgtttactacggtaaggttactgctgaattatccaagcaggtcta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 actgttgaccaagaccgtttactacggtaaggttactgctgaattatccaagcaggtcta 755
Query: 408 cactaaggaaggtctacagccaccaaacttctcggactttgaaatggtctacaccagatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cactaaggaaggtctacagccaccaaacttctcggactttgaaatggtctacaccagatt 815
Query: 468 ggacagacaagctttgggttacgctgataagcctcaacaagttagtaactcgttgaagaa 527
| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct: 816 gtacagacaagctttgggttatgctgataagcctcaacaagttgttaacttgttgaagaa 875
Query: 528 cattgaaaaggaccaagccgattcgatcggagctttcggcg 568
|||||||||||||||||||| | |||||| ||||||||||
Sbjct: 876 cattgaaaaggaccaagccgttaagatcggtgctttcggcg 916
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6191
Number of Sequences: 1807
Number of extensions: 6191
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)