BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA02FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1609 1522 0.0
>3x_Contig1609
Length = 15966
Score = 1522 bits (768), Expect = 0.0
Identities = 844/862 (97%), Gaps = 6/862 (0%)
Strand = Plus / Minus
Query: 87 ttattataaagtgtcaaaaaagacatttttgtagccttattgaggtatattaaagacact 146
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2878 ttattataaagtgtcaaaaaagacatttttgtagccttattgaggtatatgaaagacact 2819
Query: 147 atgcgaactgcctgtctagaaat-acacggccgtctcattcttcggtagccattcttttt 205
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2818 atgcgaactgcctgtctagaaatcacacggccgtctcattcttcggtagccattcttttt 2759
Query: 206 ggatgacaagttatttatttgaaagtgtctgtttctagcatttagtgtgtcaataccagc 265
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 ggatgacaagtaagttatttgaaagtgtctgtttctagcatttagtgtgtcaataccagc 2699
Query: 266 tgtgaagaaaatcttgcgcatatgatttcatgaggttacctttgcaggaggcataatatt 325
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2698 tgtgaagaaaatcttgcgcatatgatttcatgaggttac-tttgcaggaggcataatatt 2640
Query: 326 tttattccaagtatttgctttccaccgcgaaatgacagtaaagggaccaagtactaaact 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2639 tttattccaagtatttgctttccaccgcgaaatgacagtaaagggaccaagtactaaact 2580
Query: 386 gtaggtagttgtgaataaagtggaagaagcacagatgcctgcataacattgatatacctg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2579 gtaggtagttgtgaataaagtggaagaagcacagatgcctgcataacattgatatacctg 2520
Query: 446 tcaaattttcgtgatttgcaataagtaggctttttaaggtaatataaaaagttctgaagg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2519 tcaaattttcgtgatttgcaataagtaggctttttaaggtaatataaaaagttctgaagg 2460
Query: 506 gcatctacagaacattttgtaaaaaaaaaaaataaaagaattaaaactttggataaagga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2459 gcatctacagaacattttgtaaaaaaaaaaaataaaagaattaaaactttggataaagga 2400
Query: 566 ggcgcaacttactcaatttcttataacgaacaagaaagaagaactggtctgggatcagaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2399 ggcgcaacttactcaatttcttataacgaacaagaaagaagaactggtctgggatcagaa 2340
Query: 626 aacagtgcgagcaacagcgtataaagctcctcttttcagctttcatcaaaatctataaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2339 aacagtgcgagcaacagcgtataaagctcctcttttcagctttcatcaaaatctataaca 2280
Query: 686 tttggaatccgagtcgttttttataatcggtttattcattggtttttgagccagaaaggg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2279 tttggaatccgagtcgttttttataatcggtttattcattggtttttgagccagaaaggg 2220
Query: 746 tgttctgaatatcaggaagactatttgtattatcaaaacaagatattgttgataaaagaa 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2219 tgttctgaatatcaggaagactatttgtattatcaaaacaagatattgttgataaaagaa 2160
Query: 806 gtggaccagtagtatcagcaagaaatccctgttttctattttctttnttgggttt-agag 864
|||||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||
Sbjct: 2159 gtggaccagtagtatcagcaagaattccctgttttctattttctttttttggtttaagag 2100
Query: 865 actcagttt-acacgtctattcactgttnctaaatttttgaa-tagagttacattccacc 922
||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct: 2099 actcagtttaacacgtctattcactgttcct-aatttttgaattagagttacattccacc 2041
Query: 923 catacactgtggcgaaatatcg 944
|||||||| |||||||||
Sbjct: 2040 ataacactgtgcggaaatatcg 2019
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,933
Number of Sequences: 1807
Number of extensions: 13933
Number of successful extensions: 214
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)