BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA02RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig250 464 e-130
>3x_Contig250
Length = 1372
Score = 464 bits (234), Expect = e-130
Identities = 380/414 (91%), Gaps = 11/414 (2%)
Strand = Plus / Minus
Query: 409 aatatggggttataccgcctagttcaggaatcacaggtaactgatgctttctcaacgcct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 aatatggggttataccgcctagttcaggaatcacaggtaactgatgctttctcaacgcct 1305
Query: 469 ctacccaatatcgactaagcctgatccactagtcaacaatcacatacacttcttacacca 528
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1304 ctacccaatatcgactaagcctgatccactagtcaacaatcacatacactccttacacca 1245
Query: 529 catacagagcgggtcattcgatacgacaatcctttgatcaatggcaaagtttaaagaaaa 588
||||||||||||||||| |||||||||||||||| ||||||||||| |||||| |||||
Sbjct: 1244 catacagagcgggtcatccgatacgacaatccttgaatcaatggcaaggtttaa-gaaaa 1186
Query: 589 caa-tgcagtttacctactgagttaagataatgtgacaggaaagattaagaccactttgt 647
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1185 caaatgcagtttacctactgagttaagataatgtgacaagaaagattaagaccactttgt 1126
Query: 648 tacgagttttcggatcaacttccgttaggaaaccacccaacattggattgggatattttt 707
|||||| ||||||||||||| ||| || |||| |||| |||| | |||||| ||||||||
Sbjct: 1125 tacgag-tttcggatcaactaccg-taagaaaacaccaaacagtagattggaatattttt 1068
Query: 708 ttggtgtgaaaaggtactcaacttttattaatttctttgcaggaagcctcaaattt-tgg 766
|| |||||||| | |||||| | | |||| | |||||||||||||| |||| |||| |||
Sbjct: 1067 tt-gtgtgaaaggttactcagc-tatatttagttctttgcaggaag-ctcagatttctgg 1011
Query: 767 acctgctgg-tttccccgttacaatatttgattttggtttcgg-tttatttttg 818
| ||||||| |||||| || ||| ||||||||||||||||||| ||||||||||
Sbjct: 1010 a-ctgctggttttccctgtaacattatttgattttggtttcggctttatttttg 958
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6499
Number of Sequences: 1807
Number of extensions: 6499
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)