BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA03FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 1562 0.0
>3x_Contig1553
Length = 8593
Score = 1562 bits (788), Expect = 0.0
Identities = 875/892 (98%), Gaps = 9/892 (1%)
Strand = Plus / Minus
Query: 86 cttattgggaaatccttactgtcccattttggacatttcctatgacattctaaaataggg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5452 cttattgggaaatccttactgtcccattttggacatttcctatgacattctaaaataggg 5393
Query: 146 tatcggttctaataaaaaaattagtaatctcagtatacctatattaaaagaccgcacaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5392 tatcggttctaataaaaaaattagtaatctcagtatacctatattaaaagaccgcacaat 5333
Query: 206 caataccacaaaggacaatcgatacactccataaagacaaccaaaggaaaccaaaaaaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5332 caataccacaaaggacaatcgatacactccataaagacaaccaaaggaaaccaaaaaaaa 5273
Query: 266 tgtcaccgaatctatttggaatcttcagagattatccgacaccaccagaatcagggttct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5272 tgtcaccgaatctatttggaatcttcagagattatccgacaccaccagaatcagggttct 5213
Query: 326 ggggtactcctacttctactatagattggtgtgaggagaattatgtgatatcgccctata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5212 ggggtactcctacttctactatagattggtgtgaggagaattatgtgatatcgccctata 5153
Query: 386 tagcggaatggtcaaacacactcactaatagtggatttattttactagcattatacctgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5152 tagcggaatggtcaaacacactcactaatagtggatttattttactagcattatacctgt 5093
Query: 446 tgtattcttcatggaaaaataaactagagacccggtttaagttggtttgtgctggttttg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5092 tgtattcttcatggaaaaataaactagagacccggtttaagttggtttgtgctggttttg 5033
Query: 506 gattggtcgggatcggatcctggttattccatatgactttgcaatacaagtaccagttat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5032 gattggtcgggatcggatcctggttattccatatgactttgcaatacaagtaccagttat 4973
Query: 566 tagatgagttacctatggtttatgctacttgcattcctgcatggagcatattctgcgagg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4972 tagatgagttacctatggtttatgctacttgcattcctgcatggagcatattctgcgagg 4913
Query: 626 agattgatgtagctacgtcgaggatcaggtctcccaccaggagaaaacaatggactgtcg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4912 agattgatgtagctacgtcgaggatcaggtctcccaccaggagaaaacaatggactgtcg 4853
Query: 686 gattaaccatctttatgggtgctaatttacttacggctatatacctcattttcaag-atc 744
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4852 gattaaccatctttatgggtgctaatttacttacggctatatacctcattttcaagaatc 4793
Query: 745 caacgatccatcaggctggttacgctctaat-aacgctatcgttatttggtttgccttc- 802
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4792 caacgatccatcaggctggttacgctctaatcaacgctatcgttatttggtttgccttca 4733
Query: 803 aactca-cacaca-tttgtaaacgatccggttgctaaacgtaacctac-aaatgctatgt 859
|||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4732 aactcaccacacagtttgtaaacgatccggttgctaaacgtaacctacaaaatgctatgt 4673
Query: 860 tacttggtatcaccatattcctggctggttatttcgtctggcaacttgatgttcattttc 919
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4672 tacttggtatcaccatatttctggctggttatttcgtctggcaacttgatgttcatttct 4613
Query: 920 ggcaggtttgggatc-ctatttaaagatcttattt-aggttaccactaggag 969
| || |||| ||||| ||||| |||||| ||||| ||||||||||||||||
Sbjct: 4612 gtca-gttttggatcactattagaagatcatatttaaggttaccactaggag 4562
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5576
Number of Sequences: 1807
Number of extensions: 5576
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)