BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA03RM1.SCF screened BAC_end
(884 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 995 0.0
3x_Contig38 498 e-140
>3x_Contig1517
Length = 8289
Score = 995 bits (502), Expect = 0.0
Identities = 598/622 (96%), Gaps = 6/622 (0%)
Strand = Plus / Minus
Query: 52 gtgatagaaat-ataaactttttcttataacgttgttgaagtaaaccaagttgctgtgaa 110
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5350 gtgatagaaatcataaactttttcttataacgttgttgaagtaaaccaagttgctgtgaa 5291
Query: 111 ctaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaatac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5290 ctaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaatac 5231
Query: 171 atatctcttagaagaaacaaaagaaaaaaagcatattaaaggcttttttgaaggctcgat 230
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 5230 atatctcttagaagaaacaaaagaaaaaaagcatattaaaggcaatattgaaggctcgat 5171
Query: 231 caagagatatctaacaagaaaaagataaccagtacctgtagtatcagcttcatctacgaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5170 caagagatatctaacaagaaaaagataaccagtacctgtagtatcagcttcatctacgaa 5111
Query: 291 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5110 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 5051
Query: 351 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5050 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 4991
Query: 411 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4990 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 4931
Query: 471 tgtcatcaggcttcaagatgaagaggtcaaagagtcctgacccgataggaatcgattact 530
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 4930 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataact 4871
Query: 531 ataag-aacaacgggctatatatgatttcg-aaacctatcgtgggcttcttaggggaccg 588
||||| |||||||| ||||||||||||| ||||||||||| |||| || ||| ||||
Sbjct: 4870 ataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 4811
Query: 589 atgggat-aagaaacataaaattgattcaagggtggactca-tcaaagccgttgtaaata 646
||||||| ||||||||||||||||||||| || || ||||| ||||||| ||||||||||
Sbjct: 4810 atgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaata 4751
Query: 647 aaa-gatgtgggatgtatttga 667
||| ||||||||||||| ||||
Sbjct: 4750 aaaggatgtgggatgtagttga 4729
>3x_Contig38
Length = 925
Score = 498 bits (251), Expect = e-140
Identities = 353/382 (92%), Gaps = 15/382 (3%)
Strand = Plus / Minus
Query: 291 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 524
Query: 351 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 464
Query: 411 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 404
Query: 471 tgtcatcaggcttcaagatgaagaggtcaaagagtcctgacccgataggaatcgattact 530
|||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 403 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgata----------act 354
Query: 531 ataag-aacaacgggctatatatgatttcg-aaacctatcgtgggcttcttaggggaccg 588
||||| |||||||| ||||||||||||| ||||||||||| |||| || ||| ||||
Sbjct: 353 ataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 294
Query: 589 atgggat-aagaaacataaaattgattcaagggtggactca-tcaaagccgttgtaaata 646
||||||| ||||||||||||||||||||| || || ||||| ||||||| ||||||||||
Sbjct: 293 atgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaata 234
Query: 647 aaa-gatgtgggatgtatttga 667
||| ||||||||||||| ||||
Sbjct: 233 aaaggatgtgggatgtagttga 212
Score = 303 bits (153), Expect = 3e-82
Identities = 168/173 (97%)
Strand = Plus / Minus
Query: 74 cttataacgttgttgaagtaaaccaagttgctgtgaactaaatgtttcagtatgaaaaag 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 cttataacgttgttgaagtaaaccaagttgctgtgaactaaatgtttcagtatgaaaaag 731
Query: 134 acattcgaaacccttaattatgaagaagatcaaatacatatctcttagaagaaacaaaag 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 acattcgaaacccttaattatgaagaagatcaaatacatatctcttagaagaaacaaaag 671
Query: 194 aaaaaaagcatattaaaggcttttttgaaggctcgatcaagagatatctaaca 246
|| ||||||||||||||||| | ||||||||||| |||||||||||||||||
Sbjct: 670 aagaaaagcatattaaaggcaatattgaaggctcgttcaagagatatctaaca 618
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7347
Number of Sequences: 1807
Number of extensions: 7347
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 884
length of database: 10,358,551
effective HSP length: 16
effective length of query: 868
effective length of database: 10,329,639
effective search space: 8966126652
effective search space used: 8966126652
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)