BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA04FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 1130 0.0
>3x_Contig1620
Length = 12263
Score = 1130 bits (570), Expect = 0.0
Identities = 674/701 (96%), Gaps = 7/701 (0%)
Strand = Plus / Plus
Query: 88 ctggttgaacttcgagattgccaggaattgtactcttacaccttttaacatattcgtcta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1950 ctggttgaacttcgagattgccaggaattgtactcttacaccttttaacatattcgtcta 2009
Query: 148 attcgctctctgccattttttcattattaacaatccaaaggccttccacagaagcagaag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2010 attcgctctctgccattttttcattattaacaatccaaaggccttccacagaagcagaag 2069
Query: 208 tccctcgttttttttgtttattgctgtacggatcttccacccattgttgattacaattac 267
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2070 tccctcgttctccaggtttattgctgtacggatcttccacccattgttgattacaattac 2129
Query: 268 tccattggcccttttgtaaacttactctactttttttccatgggaatggtgcgatatagt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2130 tccattggcccttttgtaaacttactctactttttttccatgggaatggtgcgatatagt 2189
Query: 328 cgtcaaataatggatcacctaaatgattgcacatgtcttctcccagatactggaaccacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2190 cgtcaaataatggatcacctaaatgattgcacatgtcttctcccagatactggaaccacc 2249
Query: 388 aattttctctgtttgtattgaaatctctgatagaagccaaactttctgttagcctttcaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2250 aattttctctgtttgtattgaaatctctgatagaagccaaactttctgttagcctttcaa 2309
Query: 448 ccgaactttctattccttcccattctttgtccctcgtgatgtgctcttggttgttctgct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2310 ccgaactttctattccttcccattctttgtccctcgtgatgtgctcttggttgttctgct 2369
Query: 508 ttccgacacattttgaacaaatccaaaccacaccttttgccggcttcttttctaatggcg 567
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2370 ttccgacacaatttgaacaaatccaaaccacaccttttgccggcttcttttctaagggcg 2429
Query: 568 ggtccatgcaccacagatgaatcgatattttacagtcatcacacttgatagaagacgaat 627
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 2430 ggtccatgcaccacagatgaatcgatatcttacagtcatcacacttgatagaagacgatt 2489
Query: 628 ggtggcaccaatcgggacattcgccgcaacgcaaat-tcaactttggttttcgggtcttt 686
|||||||||||||| ||||||||||||||||||||| || ||||||| ||||| |||||
Sbjct: 2490 ggtggcaccaatcgcgacattcgccgcaacgcaaatcccagctttggtcttcggttcttt 2549
Query: 687 ttggccacatacatatttggntaagtaggttttccagtgggtaatttatcctctttgaaa 746
| |||||| |||||||||| |||||||||| ||||||||| ||||||||||| | ||||
Sbjct: 2550 t--gccacagacatatttgg-taagtaggttatccagtggg-aatttatcctcatagaaa 2605
Query: 747 ttgaatgtgaattttactagttaaaaatcttgaaatacggt 787
|||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 2606 atgaatgggaa-tttactagtt-aaaatcttgaaatacggt 2644
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7043
Number of Sequences: 1807
Number of extensions: 7043
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)