BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA05FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1421 0.0
>3x_Contig1786
Length = 33838
Score = 1421 bits (717), Expect = 0.0
Identities = 828/850 (97%), Gaps = 12/850 (1%)
Strand = Plus / Minus
Query: 87 taaatttggtccatagaaaatcaaacaaatctaagataatcttttttaatcatcatgtat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24298 taaatttggtccatagaaaatcaaacaaatctaagataatcttttttaatcatcatgtat 24239
Query: 147 tatcaatatttagtctccattttcataatactaactttgtaggttcttgtcctttttacg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24238 tatcaatatttagtctccattttcataatactaactttgtaggttcttgtcctttttacg 24179
Query: 207 tgatgttacattttggatgctgtataattcggatttgggtttattccttttttttttttg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24178 tgatgttacattttggatgctgtataattcggatttgggtttattccttttttttttttg 24119
Query: 267 ttacttcttgtagtactttcttttagctcaaaag-tg-tatataaagag-gttaaggttg 323
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 24118 ttacttcttgtagtactttcttttagctcaaaagctgctatataaagagcgttaaggttg 24059
Query: 324 actcaagaattttttggaggataatg-attcctagtagttgtgttattggtagaagtttt 382
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 24058 actcaagaattttttggaggataatgcattcctagtagttgtgttattggtagaagtttt 23999
Query: 383 ggttataatttgatacatcaaaacatatcaagcaagctcagaggtatattcaaacattat 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23998 ggttataatttgatacatcaaaacatatcaagcaagctcagaggtatattcaaacattat 23939
Query: 443 actaaaagttctactgctaatacaataaaaattacaaacacaaacacgatttccaacatg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23938 actaaaagttctactgctaatacaataaaaattacaaacacaaacacgatttccaacatg 23879
Query: 503 agtccagcttccgatagattaaagcaaacttcctcgattctttctaagtccgttgaacct 562
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 23878 agtccagcttccgatagattaaagcaaacttcctcgattctttctaagtccgtggaacct 23819
Query: 563 caagccgatgcacctttcaaggttacagttgtcggttctggtaactggggtactactatc 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23818 caagccgatgcacctttcaaggttacagttgtcggttctggtaactggggtactactatc 23759
Query: 623 gccaaggttgttgctgaaaactgtgctttgagacctaacctatttgtcaacagagttgat 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23758 gccaaggttgttgctgaaaactgtgctttgagacctaacctatttgtcaacagagttgat 23699
Query: 683 atgtgggttttcgaag-aaacattaacggtgaaaagttgactgaaatcatcaacactcgt 741
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23698 atgtgggttttcgaagaaaacattaacggtgaaaagttgactgaaatcatcaacactcgt 23639
Query: 742 cacgaaaacgtcaaatatttgccaggtattaagcttccaagtaatttggttgctaaccca 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23638 cacgaaaacgtcaaatatttgccaggtattaagcttccaagtaatttggttgctaaccca 23579
Query: 802 gnacttgtcgatgctgctanagacgctgatatccttgtctttaacattcctcatcaa-tc 860
| | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 23578 gacttggtcgatgctgctaaggacgctgatatccttgtctttaacattcctcatcaattc 23519
Query: 861 ttgccagnaatctg-tctc-act-aagggtaacgtg-agcctca-gctcctgctatctc- 914
|||||| |||||| |||| ||| |||||||||||| ||||||| |||| |||||||||
Sbjct: 23518 ttgccaagaatctgttctcaactaaagggtaacgtgaagcctcaggctcgtgctatctct 23459
Query: 915 tgtttgaagg 924
||||||||||
Sbjct: 23458 tgtttgaagg 23449
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,522
Number of Sequences: 1807
Number of extensions: 13522
Number of successful extensions: 142
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)