BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA06FM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1610 0.0
>3x_Contig1771
Length = 25932
Score = 1610 bits (812), Expect = 0.0
Identities = 882/899 (98%), Gaps = 5/899 (0%)
Strand = Plus / Plus
Query: 93 agacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtggcaaagc 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18862 agacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtggcaaagc 18921
Query: 153 aagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaagtttcttac 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18922 aagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaagtttcttac 18981
Query: 213 aaaataatttattgtaggtatataaaaataatttataggtagaaacacacaaaacagaag 272
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18982 aaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaaaacagaag 19041
Query: 273 agaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaaacaaaga 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19042 agaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaaacaaaga 19101
Query: 333 aaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatttgtatat 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19102 aaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatttgtatat 19161
Query: 393 taaaaattgatcaattagaaacaaatgaatatggtttgttcgtcttccctcttctttttt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19162 taaaaattgatcaattagaaacaaatgaatatggtttgttcgtcttccctcttctttttt 19221
Query: 453 tttggatctttacttctgccaattaacggttgtaaacaattcccatcgcctaataataat 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19222 tttggatctttacttctgccaattaacggttgtaaacaattcccatcgcctaataataat 19281
Query: 513 atcctcaaagctcagtcctctgtttcaaggtaaattcaaatgaagttggagataaggggg 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19282 atcctcaaagctcagtcctctgtttcaaggtaaattcaaatgaagttggagataaggggg 19341
Query: 573 tgaagagtgggtttggggcgtgcgtgtctttatttacaagacgacacacttctttttttt 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19342 tgaagagtgggtttggggcgtgcgtgtctttatttacaagacgacacacttctttttttt 19401
Query: 633 gctagacttagtcttaggtttgctcttaccttgtttaccgaccaaagaagctcttgtagc 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19402 gctagacttagtcttaggtttgctcttaccttgtttaccgaccaaagaagctcttgtagc 19461
Query: 693 agcctcgaagacttctctgacaccgtaaccggtcttggcagaacattcgatgtagtcaac 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19462 agcctcgaagacttctctgacaccgtaaccggtcttggcagaacattcgatgtagtcaac 19521
Query: 753 agcaccgatttggtcagcgacttcttgtgcttgagcctgagacacaggttgtaatccttg 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19522 agcaccgatttggtcagcgacttcttgtgcttgagcctgagacacaggttgtaatccttg 19581
Query: 813 agctcttagttcttc-acaacttgaggatcatttctcaaatctgctttacaaccaacccc 871
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 19582 agctcttagttcttcaacaacttgaggatcatttctcaaatctgctttacaaccaa-cca 19640
Query: 872 agatgattggacaaccttgacaaaagtgtaaaaacttcagagattcatttttccatcacg 931
||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 19641 agatgattggaacaccttgacaaaagtgt-aaaacttcagagatccatttttccatcacg 19699
Query: 932 ttttcttaggaatctggncaatcaattga-ttacagattaacac-acgttggaatctgg 988
|||||| |||||||||| |||||||||| | |||||||||||| ||||||||||||||
Sbjct: 19700 ttttctaaggaatctggcaaatcaattgagtaacagattaacacaacgttggaatctgg 19758
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9500
Number of Sequences: 1807
Number of extensions: 9500
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)