BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA06RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 1086 0.0
>3x_Contig1565
Length = 10922
Score = 1086 bits (548), Expect = 0.0
Identities = 643/666 (96%), Gaps = 7/666 (1%)
Strand = Plus / Plus
Query: 46 tctgtctgactgttgttatttaatcgggatcgttaaccgaaagtatgagatgtagagtat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5260 tctgtctgactgttgttatttaatcgggatcgttaaccgaaagtatgagatgtagagtat 5319
Query: 106 acgcttaacttagagtttatacaggtcgtacctgcttatactctgaggacagggtcggtt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5320 acgcttaacttagagtttatacaggtcgtacctgcttatactctgaggacagggtcggtt 5379
Query: 166 ttcaacagatatgtcggcttctgggtcgcgaatcagtgagcggttttgacttttttattt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5380 ttcaacagatatgtcggcttctgggtcgcgaatcagtgagcggttttgacttttttattt 5439
Query: 226 tcttttttcactttaggaattaatttccggtaatggattatatacaggcgttttaaggtt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440 tcttttttcactttaggaattaatttccggtaatggattatatacaggcgttttaaggtt 5499
Query: 286 cctcgagaacctgctcaaattgaggaggaggagggaaaaagtcactgatgcgagtgatgc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5500 cctcgagaacctgctcaaattgaggaggaggagggaaaaagtcactgatgcgagtgatgc 5559
Query: 346 atcagcacatgtgaatagaaagccaatttgagccaaagaactactgaagaacgttcaatt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5560 atcagcacatgtgaatagaaagccaatttgagccaaagaactactgaagaacgttcaatt 5619
Query: 406 atttccttccttagatcgtacgaaataggaattaatggaagcttacttattttgcttgcc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5620 atttccttccttagatcgtacgaaataggaattaatggaagcttacttattttgcttgcc 5679
Query: 466 tttttcgagctactgtttcct-aatgcgcattgtatatacatcagagatgaccgnctttt 524
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 5680 tttttcgagctactgtttcctaaatgcgcattgtatatacatcagagatgaccgcctttt 5739
Query: 525 ttctttttgc-atacaccggg-aaaagcctcagtcgacactgaaatcgtacagcatacgt 582
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5740 ttctttttgcaatacaccgggaaaaagcctcagtcgacactgaaatcgtacagcatacgt 5799
Query: 583 ggt-caaagggtgatactncttttagctttggcttttaagtccgctgattactatcattc 641
||| |||||||||||||| |||| |||||| |||||| |||||||||||||||||||||
Sbjct: 5800 ggtccaaagggtgatactcctttaggctttgtcttttaggtccgctgattactatcattc 5859
Query: 642 -aagaaattatattttacgttcccgg-atgatttttttaaccggcattcc-attaaagtc 698
| |||| || | ||||||||||| |||||||| | | |||||||||| || ||||||
Sbjct: 5860 gaggaaaatagtatatacgttcccggaatgattttctcagccggcattccgataaaagtc 5919
Query: 699 agaata 704
||||||
Sbjct: 5920 agaata 5925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6940
Number of Sequences: 1807
Number of extensions: 6940
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)