BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA07FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1009 0.0
>3x_Contig1642
Length = 16641
Score = 1009 bits (509), Expect = 0.0
Identities = 566/584 (96%), Gaps = 1/584 (0%)
Strand = Plus / Minus
Query: 81 tgagcgaagtgattttctgtttaaagttccaacgaaatcagaggcaaccagttggttgaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12559 tgagcgaagtgattttctgtttaaagttccaacgaaatcagaggcaaccagttggttgaa 12500
Query: 141 gttaagtcccaaatcagagtgattttcttcaaggatttgaagagctcgttttgtttctga 200
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 12499 gttaagtcccaaatcagagtgatttgcatcaaggatttgaagagctcgttttgtttctga 12440
Query: 201 atcagatgttnaattcgtttaattgggaacattcaataagctgttaatcttcttggataa 260
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 12439 atcagatgtgtaactcgcataattgggaacattcaataagctgttaatcttcttggataa 12380
Query: 261 aagttggtttgtagttgtaggtttctcgatgttatttgatataggagctgcgacctcctt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12379 aagttggtttgtagttgtaggtttctcgatgttatttgatataggagctgcgacctcctt 12320
Query: 321 cgataaagagacggacgcatggcgtatttcaccgagggaaatgctggcaaaatgtttcat 380
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 12319 cgataaagagacggacgcagggcgtatttcaccgagggaaatgctggcaaaatgtttcat 12260
Query: 381 cttgctgtgaagatcggtaaactcggtgtcatgcttgctgacattcggtagaacgaattt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12259 cttgctgtgaagatcggtaaactcggtgtcatgcttgctgacattcggtagaacgaattt 12200
Query: 441 ggcctcttgttcatcgtcattcaatctcaagcttgccaacgaaagacgtgacgctggttg 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12199 ggcctcttgttcatcgtcattcaatctcaagcttgccaacgaaagacgtgacgctggttg 12140
Query: 501 aggtaatgcagcagactcgtccactaccagtgccggaaaatctagaaagtccattacaga 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12139 aggtaatgcagcagactcgtccactaccagtgccggaaaatctagaaagtccattacaga 12080
Query: 561 tatgagatctgctatttataaacgagtgcaatgattattttattttgttagaatcctgat 620
||||||||||||||||||||| |||||||||||||| ||| | ||| |||||||||||
Sbjct: 12079 tatgagatctgctatttataattgagtgcaatgatta-gttagtatgtcagaatcctgat 12021
Query: 621 ttcgcgagttgtttaatgtctttttaattcaatttgtatgactt 664
||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct: 12020 ttcgcgagtagtttaatgtctctttaatacaatttgtatgactt 11977
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8068
Number of Sequences: 1807
Number of extensions: 8068
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)