BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA08FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1032 1534 0.0
>3x_Contig1032
Length = 3920
Score = 1534 bits (774), Expect = 0.0
Identities = 796/803 (99%), Gaps = 1/803 (0%)
Strand = Plus / Minus
Query: 86 taaattaagggtacaatgacatataccctttgaaaggctaaaatgattagtaacaagtga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 taaattaagggtacaatgacatataccctttgaaaggctaaaatgattagtaacaagtga 750
Query: 146 ttacatgaccagggaggcaaaggcatgatctctgatctgggtctaggccaagatgggggt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ttacatgaccagggaggcaaaggcatgatctctgatctgggtctaggccaagatgggggt 690
Query: 206 caagactatatatattagggcagcgaagtgagaatagatgagtaagcccatggtatgtat 265
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 caagactatatataagagggcagcgaagtgagaatagatgagtaagcccatggtatgtat 630
Query: 266 agatttgtagagctcagttatagtgcaaaccacaactaagatcatcaatacaaccaatca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agatttgtagagctcagttatagtgcaaaccacaactaagatcatcaatacaaccaatca 570
Query: 326 acatgtcacgattctttgacgcttttgaagtatacaacaagaacaaacacgcaccagctg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acatgtcacgattctttgacgcttttgaagtatacaacaagaacaaacacgcaccagctg 510
Query: 386 actttaagtcacatggtggcagcagcttgaacacgggagccacgacggcttacatgttcg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actttaagtcacatggtggcagcagcttgaacacgggagccacgacggcttacatgttcg 450
Query: 446 ctcgtgaataccggggccccagcacaggtgaaaagaaggaagcagctgcagctgcgctag 505
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 ctcgtgaataccggggccccagcacaggtgaaaagaaggaagcagctgcag-tgcgctag 391
Query: 506 cagcagacgtgaaggctggtaaagtggagttggtcaacgatccaaatactgccgattcct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cagcagacgtgaaggctggtaaagtggagttggtcaacgatccaaatactgccgattcct 331
Query: 566 ccagaaagtctagtgtcagcgaggaggccatgccccagatggtagacatatcgaagttga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ccagaaagtctagtgtcagcgaggaggccatgccccagatggtagacatatcgaagttga 271
Query: 626 ctagagaagagtttgaagctttatataacaaaatcaatcccggtatgcttcgtaaaggag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctagagaagagtttgaagctttatataacaaaatcaatcccggtatgcttcgtaaaggag 211
Query: 686 aacctaacaacaaggtcaatttctaatcaactacacaccactattagtatatatttataa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aacctaacaacaaggtcaatttctaatcaactacacaccactattagtatatatttataa 151
Query: 746 gatttacaacaagtaagtaaaccctgtgtgntactaagacacagtntaacacacagtnat 805
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct: 150 gatttacaacaagtaagtaaaccctgtgtgtaactaagacacagtataacacacagtaat 91
Query: 806 aataaagagataatagcatgagcagattaaagtacagtgccgttccagggtatttcacca 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 aataaagagataatagcatgagcagattaaagtacagtgccgttccagggtatttcacca 31
Query: 866 gttttggtgatgaaaacgttctg 888
|||||||||||||||||||||||
Sbjct: 30 gttttggtgatgaaaacgttctg 8
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5504
Number of Sequences: 1807
Number of extensions: 5504
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)