BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA08RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig774 936 0.0
>3x_Contig774
Length = 2612
Score = 936 bits (472), Expect = 0.0
Identities = 520/532 (97%), Gaps = 3/532 (0%)
Strand = Plus / Plus
Query: 54 aacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctggcatgatc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 aacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctggcatgatc 2099
Query: 114 ctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgtcaatgaga 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 ctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgtcaatgaga 2159
Query: 174 ttgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggcaatatgtgagat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 ttgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggcaatatgtgagat 2219
Query: 234 tacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttttgatgatc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 tacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttttgatgatc 2279
Query: 294 aaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaacaatggta 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2280 aaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaacaatggta 2339
Query: 354 gaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgatgggttccg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2340 gaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgatgggttccg 2399
Query: 414 cgtcacaacaagatcctcttgttggtattcattcggataatttaccaagccatgaacttg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2400 cgtcacaacaagatcctcttgttggtattcattcggataatttaccaagccatgaacttg 2459
Query: 474 acttccctcctaggccctatgagaatgtgctagattcgccaatgggt-taagtcatcagc 532
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2460 acttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaagtcatcagc 2519
Query: 533 aaacgcat-acggcttttctggatgcccagat-taaaagaccttttaggatt 582
|||||||| |||||| | ||| |||| |||| |||| ||||||||||||||
Sbjct: 2520 aaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 2571
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8998
Number of Sequences: 1807
Number of extensions: 8998
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)