BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA09FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 1443 0.0
>3x_Contig1726
Length = 20144
Score = 1443 bits (728), Expect = 0.0
Identities = 862/891 (96%), Gaps = 14/891 (1%)
Strand = Plus / Minus
Query: 86 tgttgctgttgccatcaaaagagattgtggataatttctgcggccggatcctagtgtgtc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9261 tgttgctgttgccatcaaaagagattgtggataatttctgcggccggatcctagtgtgtc 9202
Query: 146 tggaataacgtcaagcgtcatacatggccaaggaacgttaactgtatgtaacatttcgta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9201 tggaataacgtcaagcgtcatacatggccaaggaacgttaactgtatgtaacatttcgta 9142
Query: 206 gactgtaggatttttttccaaaacttcatcaggacccaaaggcttagataaatgtggcaa 265
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9141 gactgtaggatcagcttccaaaacttcatcaggacccaaaggcttagataaatgtggcaa 9082
Query: 266 ccacaattgttcactttgctcttgttcagcattttgatccttttcgactagctcttgagc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9081 ccacaattgttcactttgctcttgttcagcattttgatccttttcgactagctcttgagc 9022
Query: 326 ttgttgttgcttcttttccagaaactcatcgttctcaatgtttccatctaattcttcttc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9021 ttgttgttgcttcttttccagaaactcatcgttctcaatgtttccatctaattcttcttc 8962
Query: 386 attatcttcttcatcgtcaatttcgatgatttcgccatcactctcgaaatcatcaccata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8961 attatcttcttcatcgtcaatttcgatgatttcgccatcactctcgaaatcatcaccata 8902
Query: 446 agggtcctcgaattcacccatttcaacatcttgctcattggcattcactgcattggccga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8901 agggtcctcgaattcacccatttcaacatcttgctcattggcattcactgcattggccga 8842
Query: 506 tggtacttcaccagcctctgtcttagaatggacaattcgatcatcgacgttttctagtcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8841 tggtacttcaccagcctctgtcttagaatggacaattcgatcatcgacgttttctagtcc 8782
Query: 566 ttcatcggaagcagttctcttggacatcctggaattgttctattgaagtacagtttgtca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8781 ttcatcggaagcagttctcttggacatcctggaattgttctattgaagtacagtttgtca 8722
Query: 626 ctgattcaatcaaggccagcaacttttgccaatagatcaatactggtacataacttactt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8721 ctgattcaatcaaggccagcaacttttgccaatagatcaatactggtacataacttactt 8662
Query: 686 atagattccttactatgtagtgtttgatcatctcatcgcatcgtttcaat-aaattttc- 743
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8661 atagattccttactatgtagtgtttgatcatctcatcgcatcgtttcaataaaattttca 8602
Query: 744 atatttggaaaagaaat-atgtggtcacgtgatacgtaaatatgttcttccatgtgtcag 802
||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8601 atattggaaaaagaaatcatgtggtcacgtgatacgtaaatatgttcttccatgtgtcag 8542
Query: 803 nttgtgaaa-gtatacttaaataggc-atgtacctatcaagggtgggcttgcgttggctt 860
|||||||| |||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 8541 -ttgtgaaaggtatac-taaataggcaatgtacctatcaagggtgggctgcggttggctt 8484
Query: 861 atcttaaaaac-atttcacaacacctcaatggttttcatactcaaaataattgncctnca 919
||||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||| ||
Sbjct: 8483 atcttaaaaactatttcacaacacctcaat-gttttcatactc-aaataattgtccttca 8426
Query: 920 tctnttttnctttaagctnctttttcctggtttcttcagggctttcctctg 970
||| |||| |||| |||| ||||||| ||||||||| ||||||||||||
Sbjct: 8425 tct-tttttcttt-agcttctttttc--tgtttcttcaaggctttcctctg 8379
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7852
Number of Sequences: 1807
Number of extensions: 7852
Number of successful extensions: 105
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)