BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA09RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1233 0.0
>3x_Contig1629
Length = 12481
Score = 1233 bits (622), Expect = 0.0
Identities = 697/714 (97%), Gaps = 6/714 (0%)
Strand = Plus / Minus
Query: 49 gactatttaaaaaacatgaaaaaat-aagtgaaaaatttttaatagttcttcatctcatc 107
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10492 gactatttaaaaaacatgaaaaaatcaagtgaaaaatttttaatagttcttcatctcatc 10433
Query: 108 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10432 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 10373
Query: 168 aaactctagaacggtaaccacagctctagctagttaatattaatacacaatgtctcacag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10372 aaactctagaacggtaaccacagctctagctagttaatattaatacacaatgtctcacag 10313
Query: 228 aaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagctgcctc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10312 aaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagctgcctc 10253
Query: 288 tgttagaggtagagttaagtctttcccaaaggacgaccaaactaagccagttgctttgac 347
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10252 tgttagaggtagagttaagtctttcccaaaggacgaccaaactaaggcagttgctttgac 10193
Query: 348 ctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacagaccagg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10192 ctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacagaccagg 10133
Query: 408 ttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacaccccaccaat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10132 ttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacaccccaccaat 10073
Query: 468 cgttgttgtcggtgttgttggttacgttgaaaccccaaga-gtttgagatccttgaccac 526
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 10072 cgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatccttgaccac 10013
Query: 527 cgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagatctggtacaa 586
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10012 cgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactggtacaa 9953
Query: 587 gtccaagaagaaggc-ttcaccaagtactctgcttagtacgctgaaaacggtgcccaagt 645
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9952 gtccaagaagaaggctttcaccaagtactctgctaagtacgctgaaaacggtgcccaagt 9893
Query: 646 cgacagagaattggccagaatcaagaagtacgcctctgttgttagagtccttggtccaca 705
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 9892 cgacagagaattggccagaatcaagaagtacgcttctgttgttagagt-cttggtccaca 9834
Query: 706 ccccaatcaaaagaactcccttgcctcaaaagaaaggctcattttggctgaaat 759
||| | ||| || ||||| ||| |||||||| |||||||| ||||||||||||
Sbjct: 9833 cccaagtcagaaagactccattgtctcaaaag-aaggctca-tttggctgaaat 9782
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6758
Number of Sequences: 1807
Number of extensions: 6758
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)