BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZA11FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1084 1572 0.0
>3x_Contig1084
Length = 4569
Score = 1572 bits (793), Expect = 0.0
Identities = 838/851 (98%), Gaps = 2/851 (0%)
Strand = Plus / Plus
Query: 89 aatcgacataaatacaccggcacttagttcggattttcttgaagttgtaagagaattcaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatcgacataaatacaccggcacttagttcggattttcttgaagttgtaagagaattcaa 300
Query: 149 cctcagtcatcctcttgacataaatggtaaaatgagccgccaaaacaattagaaattact 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cctcagtcatcctcttgacataaatggtaaaatgagccgccaaaacaattagaaattact 360
Query: 209 agccagtattattatctgatatgagacggctagcaccgttcaaagaccttgtacaaacca 268
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agccagtattaacatctgatatgagacggctagcaccgttcaaagaccttgtacaaacca 420
Query: 269 ggaagattcgcaacttcaaccacgtccttcaataaaattttgggggcaagaagtcttctt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggaagattcgcaacttcaaccacgtccttcaataaaattttgggggcaagaagtcttctt 480
Query: 329 tttattactgggaatacaacatgatccattgtgtccgtaagttcattcatttcagcagcg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttattactgggaatacaacatgatccattgtgtccgtaagttcattcatttcagcagcg 540
Query: 389 tatgtactgctcaaatgttctggatcattttcgtgaattttttcaattataggagggatg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatgtactgctcaaatgttctggatcattttcgtgaattttttcaattataggagggatg 600
Query: 449 taaaacaaagcgagttgtcttaatataccgtccaaacattccatctcgtcctcccaattc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taaaacaaagcgagttgtcttaatataccgtccaaacattccatctcgtcctcccaattc 660
Query: 509 acttgtgtccctaatctatataggaaaaaaggaagttttgaaagcggtgggttataatct 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acttgtgtccctaatctatataggaaaaaaggaagttttgaaagcggtgggttataatct 720
Query: 569 ttgagtaaaaggggaatactcttaattcgtgccttgttccaaccaccgtcatttgtctcg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttgagtaaaaggggaatactcttaattcgtgccttgttccaaccaccgtcatttgtctcg 780
Query: 629 atttcaatagagaagtattcattcatcatctctttcatactagtaagcttttcgataatc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 atttcaatagagaagtattcattcatcatctctttcatactagtaagcttttcgataatc 840
Query: 689 tcctgtatcgtttctattctcaaggtgtcaatattttccagtatctttgtaatgttgaac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcctgtatcgtttctattctcaaggtgtcaatattttccagtatctttgtaatgttgaac 900
Query: 749 ccggcttcagtttcatcttcatcaaagagcatgattttcccaaagttggaaaaatctgat 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ccggcttcagtttcatcttcatcaaagagcatgattttcccaaagttggaaaaatctgat 960
Query: 809 nagccgatctggttagatagttcattgcaaatgctcccgtagtcaaccaagaatagtttt 868
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 961 aagccgatctggtagaatagttcattgcaaatgctcccgtagtcaaccaagaatag-ttt 1019
Query: 869 gaaatcacactgnatagacgctaaccttcttgtctcgtcaacaatgcccacattagttaa 928
|| ||||||||| |||||||||||||| |||||||||||||||||||| |||| |||| |
Sbjct: 1020 gagatcacactgaatagacgctaacctccttgtctcgtcaacaatgccaacataagtt-a 1078
Query: 929 agttagcaaaa 939
|||||||||||
Sbjct: 1079 agttagcaaaa 1089
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7224
Number of Sequences: 1807
Number of extensions: 7224
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)