BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC10ZA11RM1.SCF screened BAC_end (980 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1318 946 0.0 >3x_Contig1318 Length = 8566 Score = 946 bits (477), Expect = 0.0 Identities = 566/585 (96%), Gaps = 8/585 (1%) Strand = Plus / Minus Query: 49 atattattaccttgcaaatattttgataggtcctgattaatgtccagcgacgttggatag 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6355 atattattaccttgcaaatattttgataggtcctgattaatgtccagcgacgttggatag 6296 Query: 109 aattttttaatgttggtacctttgaggatccaagatttgatttgtattggatcctttgta 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6295 aattttttaatgttggtacctttgaggatccaagatttgatttgtattggatcctttgta 6236 Query: 169 ggtgaagtgttaaaattgaagttaaaaccattttggtgattaatgttttctttattgaaa 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6235 ggtgaagtgttaaaattgaagttaaaaccattttggtgattaatgttttctttattgaaa 6176 Query: 229 ctgttggagttgttgttaaag-tcataatcagtcatcgtatcattgctaccattcatcct 287 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 6175 ctgttggagttgttgttaaagctcataatcagtcatcgtatcattgctaccattcatcct 6116 Query: 288 aaatttgaaactgttatgagaaaaagtatttgagttagaacttgaactaggtactgaatt 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6115 aaatttgaaactgttatgagaaaaagtatttgagttagaacttgaactaggtactgaatt 6056 Query: 348 cgaatttgaattattattagaagaaaacttcgaattgttcgatggcatgtagtgataatt 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6055 cgaatttgaattattattagaagaaaacttcgaattgttcgatggcatgtagtgataatt 5996 Query: 408 attgtttagttgatcattcaagtaatctacatcgaaatctgaatccgaatcgtgcaaatc 467 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 5995 attgtttagttgatcattcaagtaatctacatcgaaatctgaatccgaatcgtccaaatc 5936 Query: 468 attatccgaatcatacaacgagaattttgggaattgatttcgatagggggtaagttcatc 527 ||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| Sbjct: 5935 attatccgaatcagacaacgagaatttt-ggaattgatttcgata-ggggtaagttcatc 5878 Query: 528 ttttgagaggttgagttccaaaccaaaaaaagtc-gaaagatccaaattgcttacttaat 586 ||||||| |||||||||||||||||||| |||| ||| ||||||| ||||| || ||| Sbjct: 5877 -tttgaga-gttgagttccaaaccaaaaagagtcagaaggatccaagttgctaac-taag 5821 Query: 587 tttgatgcgttccaaagtataatcagacgaagctctggagtttgg 631 ||||||||| | | ||||| || |||||||||||||||||||||| Sbjct: 5820 tttgatgcg-tacgaagtagaagcagacgaagctctggagtttgg 5777 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,250 Number of Sequences: 1807 Number of extensions: 10250 Number of successful extensions: 76 Number of sequences better than 1.0e-20: 1 length of query: 980 length of database: 10,358,551 effective HSP length: 16 effective length of query: 964 effective length of database: 10,329,639 effective search space: 9957771996 effective search space used: 9957771996 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)