BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB01FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1696 1277 0.0
>3x_Contig1696
Length = 16725
Score = 1277 bits (644), Expect = 0.0
Identities = 677/684 (98%), Gaps = 3/684 (0%)
Strand = Plus / Plus
Query: 223 tactaattgagtttgttgactagacgcagcagtaccacacactcctttaccaaattgaat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 tactaattgagtttgttgactagacgcagcagtaccacacactcctttaccaaattgaat 79
Query: 283 caactgacaagcaactttgccttgaaatggcccaagaatcaactctt-ttttattctctc 341
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 80 caactgacaagcaactttgccttgaaatggcccaagaatcaactcttattttattctctc 139
Query: 342 tccgagtgaggtagaacccagcccagttaacgtcaacattaagtgatatgtaacaatgcc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tccgagtgaggtagaacccagcccagttaacgtcaacattaagtgatatgtaacaatgcc 199
Query: 402 agattaatgatgcggcgttcgccagattgcagacccagttgtcttgaccttctgctaaag 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agattaatgatgcggcgttcgccagattgcagacccagttgtcttgaccttctgctaaag 259
Query: 462 cctcatatgaaatcaagagttgctcgagagcttttttcctgtctgttgtttggaatgaag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctcatatgaaatcaagagttgctcgagagcttttttcctgtctgttgtttggaatgaag 319
Query: 522 agtagtctgcgtgatgtttaccgtcttctcccatattaaatagaggtcgatattttgtag 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtagtctgcgtgatgtttaccgtcttctcccatattaaatagaggtcgatattttgtag 379
Query: 582 ccagccttttagttaagagacgcagcgtagactctaaagcaaagtttagttaacaatatt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccagccttttagttaagagacgcagcgtagactctaaagcaaagtttagttaacaatatt 439
Query: 642 tacttgtattttcaacataaatttctcctgtgtaaaatcaaggttcaaaatctgatttac 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacttgtattttcaacataaatttctcctgtgtaaaatcaaggttcaaaatctgatttac 499
Query: 702 aacaagtactgttttaagaactctaatagtcagatccgaaaatgttaaattcttttcaaa 761
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aacaagtactgtttaaagaactctaatagtcagatccgaaaatgttaaattcttttcaaa 559
Query: 762 tccaccgaagaaagaaaaggcgcattactttactatttgagggagctgttctcgtcacac 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccaccgaagaaagaaaaggcgcattactttactatttgagggagctgttctcgtcacac 619
Query: 822 agtgaccaatgtctgctctcactacgctttgactcagaacgttggttccctgcatttgtt 881
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct: 620 agtgaccaatgtctgctctcactacgctttgactcagaccg-tggttccctgcatttg-t 677
Query: 882 tgattcagtcatctttaacaaaaa 905
||| ||||||||||| ||||||||
Sbjct: 678 tgagtcagtcatcttaaacaaaaa 701
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6449
Number of Sequences: 1807
Number of extensions: 6449
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)