BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZB01RM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1216 1072 0.0
>3x_Contig1216
Length = 5132
Score = 1072 bits (541), Expect = 0.0
Identities = 590/605 (97%), Gaps = 1/605 (0%)
Strand = Plus / Minus
Query: 48 cagtgtcctgtttgtagagcacctttaccaccactttagaggccattgccattatgtcgt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 cagtgtcctgtttgtagagcacctttaccaccactttagaggccattgccattatgtcgt 2066
Query: 108 agcatggacagtgtcacgtttgcagccttttctatacgcagtataatttttaaccttaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 agcatggacagtgtcacgtttgcagccttttctatacgcagtataatttttaaccttaaa 2006
Query: 168 ttatgaaaatgacattatgattcataacttcaaatactcacttattttgtacaacaacga 227
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 2005 ttatgaaaatgacattatgattcataacttcaaatactcacttatcttgcacaacaacga 1946
Query: 228 agataggaaaaagcagagaacaagcaccaccagtaattgcaatcatgactattaggcatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 agataggaaaaagcagagaacaagcaccaccagtaattgcaatcatgactattaggcatc 1886
Query: 288 cacaaaggtatgaatgagtatatcctacttatacaataatttaattccttttaaccgggc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 cacaaaggtatgaatgagtatatcctacttatacaataatttaattccttttaaccgggc 1826
Query: 348 tgatactaactgatcgtattggatctatatttttagcgtcaaagcatgcctgttcgacat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 tgatactaactgatcgtattggatctatatttttagcgtcaaagcatgcctgttcgacat 1766
Query: 408 ggatggcttgttaataaacaccgaagacatgtacactgttgctataaataaggtcttgga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 ggatggcttgttaataaacaccgaagacatgtacactgttgctataaataaggtcttgga 1706
Query: 468 ggcacatgacaaaggtactatgtcttgggatctgaagttgcagttgcaaggtttgcctgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 ggcacatgacaaaggtactatgtcttgggatctgaagttgcagttgcaaggtttgcctgg 1646
Query: 528 tccagaagctggccgtaaaggtattgaatattatgatttacctttgtcattctgagaatt 587
|||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct: 1645 tccagaagctggccgtaaggttattgaatattatgatttacctttgtcattcgaagaatt 1586
Query: 588 tgatacggtgaataagaaacattagggcattcttgtggccaacaagcaaattttttcctg 647
||||||| |||||| ||||||| | |||| || |||||||||| ||||||||| | ||||
Sbjct: 1585 tgatacgttgaataggaaacatca-ggcaatcctgtggccaacgagcaaatttctccctg 1527
Query: 648 gaaca 652
|||||
Sbjct: 1526 gaaca 1522
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5941
Number of Sequences: 1807
Number of extensions: 5941
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)